11-9046003-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9046003
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9046003
    reference: chr 11
allele count: 1
allele frequency: 9.437523593808984e-5
allele num: 10596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+1246C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.330-43C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-5751G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+1246C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+1246C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+1246C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+1246C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+1246C>T
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

11-9047158-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047158
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047158
    reference: chr 11
allele count: 1
allele frequency: 8.743857440148296e-6
allele num: 114366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+91A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+91A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.*47A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+91A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+91A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+91A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4596T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+91A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+91A>G
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6154
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2807
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

11-9047158-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047158
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047158
    reference: chr 11
allele count: 1
allele frequency: 8.743857440148296e-6
allele num: 114366
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+91A>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+91A>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4596T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+91A>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.*47A>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+91A>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+91A>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+91A>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+91A>C
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5831
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11797
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1890
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11413
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4645
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4028
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

11-9047162-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047162
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047162
    reference: chr 11
allele count: 3
allele frequency: 2.621781762886058e-5
allele num: 114426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+87A>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.*43A>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+87A>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+87A>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+87A>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+87A>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+87A>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4592T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+87A>T
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11900
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11404
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2472
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3407
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2805
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

11-9047165-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047165
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047165
    reference: chr 11
allele count: 1
allele frequency: 8.729812309035356e-6
allele num: 114550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+84A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+84A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+84A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.*40A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+84A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+84A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+84A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+84A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4589T>C
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12415
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12064
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9322
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11408
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2613
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12651
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

11-9047168-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047168
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047168
    reference: chr 11
allele count: 1
allele frequency: 8.724785370279891e-6
allele num: 114616
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.*37A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+81A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4586T>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+81A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+81A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+81A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+81A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+81A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+81A>G
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14253
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

11-9047171-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047171
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047171
    reference: chr 11
allele count: 2
allele frequency: 1.74310167512071e-5
allele num: 114738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+78C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+78C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+78C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+78C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.*34C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+78C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+78C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4583G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+78C>G
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5884
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12445
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1560
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4720
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

11-9047177-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047177
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047177
    reference: chr 11
allele count: 1
allele frequency: 8.685682520932494e-6
allele num: 115132
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+72A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+72A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.*28A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+72A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+72A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+72A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+72A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4577T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+72A>G
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12837
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17015
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3561
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD

11-9047181-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047181
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047181
    reference: chr 11
allele count: 1
allele frequency: 8.652165637058956e-6
allele num: 115578
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+68T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.*24T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+68T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+68T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+68T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+68T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4573A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+68T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+68T>C
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10275
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5933
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11459
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-9047182-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047182
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047182
    reference: chr 11
allele count: 1
allele frequency: 8.649321893163576e-6
allele num: 115616
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+67C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.*23C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4572G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+67C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+67C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+67C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+67C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+67C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+67C>G
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3454
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

11-9047190-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047190
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047190
    reference: chr 11
allele count: 2
allele frequency: 1.715265866209263e-5
allele num: 116600
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+59G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+59G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+59G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+59G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+59G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4564C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+59G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.*15G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+59G>A
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2238
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1823
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10592
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

11-9047191-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047191
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047189
    reference: chr 11
allele count: 1
allele frequency: 8.553002959339024e-6
allele num: 116918
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+56_120+57delTT
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4562_383-4561delAA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+56_1489+57delTT
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+56_2191+57delTT
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+56_329+57delTT
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+56_2683+57delTT
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+56_2854+57delTT
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+56_2767+57delTT
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.*12_*13delTT
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13788
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17002
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2947
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7096
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3680
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5024
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: GAA
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP

11-9047201-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047201
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047201
    reference: chr 11
allele count: 1
allele frequency: 8.452799567216662e-6
allele num: 118304
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+48G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+48G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+48G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+48G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+48G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4553C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+48G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.*4G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+48G>A
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5978
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10724
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5064
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7207
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3716
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2957
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum

11-9047214-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047214
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047214
    reference: chr 11
allele count: 2
allele frequency: 1.669031127430527e-5
allele num: 119830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+35T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+35T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+35T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4540A>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.350T>A
  hgvsp: ENST00000519202.1:c.350T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+35T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+35T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+35T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+35T>A
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22053
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7315
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser117Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

11-9047215-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047215
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047215
    reference: chr 11
allele count: 1
allele frequency: 8.340005337603416e-6
allele num: 119904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+34C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.349C>T
  hgvsp: ENSP00000432828.1:p.Ser117Phe
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+34C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+34C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4539G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+34C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+34C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+34C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+34C>T
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10785
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5109
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser117Phe
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

11-9047217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047217
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047217
    reference: chr 11
allele count: 2
allele frequency: 1.665944757271849e-5
allele num: 120052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+32G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.347G>A
  hgvsp: ENST00000519202.1:c.347G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+32G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+32G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+32G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+32G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+32G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+32G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4537C>T
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10808
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5991
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5102
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala116Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

11-9047218-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047218
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047218
    reference: chr 11
allele count: 2
allele frequency: 1.663450662053363e-5
allele num: 120232
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+31C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+31C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4536G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+31C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+31C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.346C>T
  hgvsp: ENSP00000432828.1:p.Ala116Val
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+31C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+31C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+31C>T
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10817
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19063
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14626
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11498
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala116Val
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: DP

11-9047219-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047219
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047219
    reference: chr 11
allele count: 1
allele frequency: 8.308822307526131e-6
allele num: 120354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+30G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4535C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+30G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+30G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+30G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.345G>C
  hgvsp: ENSP00000432828.1:p.Ala116Pro
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+30G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+30G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+30G>C
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14675
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7345
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala116Pro
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

11-9047222-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047222
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047222
    reference: chr 11
allele count: 1
allele frequency: 8.292011476143882e-6
allele num: 120598
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+27A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+27A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+27A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+27A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+27A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+27A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.342A>G
  hgvsp: ENSP00000432828.1:p.Arg115Gly
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4532T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+27A>G
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3753
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg115Gly
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

11-9047227-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047227
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047227
    reference: chr 11
allele count: 2
allele frequency: 1.654998924250699e-5
allele num: 120846
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+22T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+22T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+22T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.337T>C
  hgvsp: ENSP00000432828.1:p.Met113Thr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+22T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4527A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+22T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+22T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+22T>C
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1960
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Met113Thr
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-9047242-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047242
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047242
    reference: chr 11
allele count: 1278
allele frequency: 1.054003232936364e-2
allele num: 121252
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+7A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+7A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+7A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4512T>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+7A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+7A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.322A>G
  hgvsp: ENSP00000432828.1:p.His108Arg
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+7A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+7A>G
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 5900
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 6.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 14856
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 9.75e1
  variant carriers: 661
genotype depth: GenotypeDepth
  all individuals: 18901
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 8.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10668
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 5.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3431
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 1959
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.25e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12535
  bin: 9.75e1
  variant carriers: 1265
hgvs: p.His108Arg
num of homozygotes: 12
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

11-9047248-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047248
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047248
    reference: chr 11
allele count: 42
allele frequency: 3.462375519356328e-4
allele num: 121304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2191+1G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1489+1G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2767+1G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.316G>C
  hgvsp: ENSP00000432828.1:p.Gly106Ala
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4506C>G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.120+1G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.329+1G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2683+1G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2854+1G>C
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3587
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15133
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 18905
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10934
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 11727
  bin: 9.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 7409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 8.25e1
  variant carriers: 0
hgvs: c.2683+1G>C
num of homozygotes: 1
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum

11-9047253-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047253
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047253
    reference: chr 11
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2187T>C
  hgvsp: ENST00000450649.2:c.2187T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2850T>C
  hgvsp: ENST00000457346.2:c.2850T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.325T>C
  hgvsp: ENST00000528651.1:c.325T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4501A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.311T>C
  hgvsp: ENST00000519202.1:c.311T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2763T>C
  hgvsp: ENST00000309263.3:c.2763T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.116T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2679T>C
  hgvsp: ENST00000520467.1:c.2679T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1485T>C
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4288
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr893Tyr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-9047254-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047254
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047254
    reference: chr 11
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2186A>G
  hgvsp: ENSP00000415187.2:p.Tyr729Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.310A>G
  hgvsp: ENSP00000432828.1:p.Tyr104Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.115A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2762A>G
  hgvsp: ENSP00000310658.3:p.Tyr921Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4500T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.324A>G
  hgvsp: ENSP00000435902.1:p.Tyr109Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2849A>G
  hgvsp: ENSP00000390481.2:p.Tyr950Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1484A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2678A>G
  hgvsp: ENSP00000429969.1:p.Tyr893Cys
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6076
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4288
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23297
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Tyr893Cys
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

11-9047258-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047258
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047258
    reference: chr 11
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2674A>T
  hgvsp: ENSP00000429969.1:p.Thr892Ser
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.320A>T
  hgvsp: ENSP00000435902.1:p.Thr108Ser
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2758A>T
  hgvsp: ENSP00000310658.3:p.Thr920Ser
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2845A>T
  hgvsp: ENSP00000390481.2:p.Thr949Ser
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.306A>T
  hgvsp: ENSP00000432828.1:p.Thr103Ser
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2182A>T
  hgvsp: ENSP00000415187.2:p.Thr728Ser
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1480A>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.111A>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4496T>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18895
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6075
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23314
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr892Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

11-9047261-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047261
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047261
    reference: chr 11
allele count: 22
allele frequency: 1.812848149246844e-4
allele num: 121356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2755G>A
  hgvsp: ENSP00000310658.3:p.Val919Met
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4493C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.108G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2671G>A
  hgvsp: ENSP00000429969.1:p.Val891Met
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.317G>A
  hgvsp: ENSP00000435902.1:p.Val107Met
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1477G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2179G>A
  hgvsp: ENSP00000415187.2:p.Val727Met
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.303G>A
  hgvsp: ENSP00000432828.1:p.Val102Met
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2842G>A
  hgvsp: ENSP00000390481.2:p.Val948Met
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6077
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10945
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18878
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7417
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3743
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5104
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11711
  bin: 9.75e1
  variant carriers: 22
hgvs: p.Val891Met
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

11-9047262-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047262
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047262
    reference: chr 11
allele count: 3
allele frequency: 2.471943441934048e-5
allele num: 121362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2754C>T
  hgvsp: ENST00000309263.3:c.2754C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.316C>T
  hgvsp: ENST00000528651.1:c.316C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.107C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1476C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.302C>T
  hgvsp: ENST00000519202.1:c.302C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2670C>T
  hgvsp: ENST00000520467.1:c.2670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2841C>T
  hgvsp: ENST00000457346.2:c.2841C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2178C>T
  hgvsp: ENST00000450649.2:c.2178C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4492G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10948
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11700
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr890Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

11-9047264-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047264
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047264
    reference: chr 11
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1474T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.300T>C
  hgvsp: ENSP00000432828.1:p.Tyr101His
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.314T>C
  hgvsp: ENSP00000435902.1:p.Tyr106His
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2752T>C
  hgvsp: ENSP00000310658.3:p.Tyr918His
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.105T>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2668T>C
  hgvsp: ENSP00000429969.1:p.Tyr890His
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2176T>C
  hgvsp: ENSP00000415187.2:p.Tyr726His
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2839T>C
  hgvsp: ENSP00000390481.2:p.Tyr947His
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4490A>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11698
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr890His
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

11-9047264-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047264
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047264
    reference: chr 11
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.300T>A
  hgvsp: ENSP00000432828.1:p.Tyr101Asn
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.314T>A
  hgvsp: ENSP00000435902.1:p.Tyr106Asn
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.105T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2752T>A
  hgvsp: ENSP00000310658.3:p.Tyr918Asn
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4490A>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2668T>A
  hgvsp: ENSP00000429969.1:p.Tyr890Asn
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2176T>A
  hgvsp: ENSP00000415187.2:p.Tyr726Asn
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1474T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2839T>A
  hgvsp: ENSP00000390481.2:p.Tyr947Asn
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2985
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11698
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Tyr890Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

11-9047265-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047265
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047265
    reference: chr 11
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.313A>C
  hgvsp: ENST00000528651.1:c.313A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2751A>C
  hgvsp: ENST00000309263.3:c.2751A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2667A>C
  hgvsp: ENST00000520467.1:c.2667A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2175A>C
  hgvsp: ENST00000450649.2:c.2175A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.104A>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.299A>C
  hgvsp: ENST00000519202.1:c.299A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4489T>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2838A>C
  hgvsp: ENST00000457346.2:c.2838A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1473A>C
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15211
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11697
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro889Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

11-9047268-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047268
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047268
    reference: chr 11
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.296C>G
  hgvsp: ENST00000519202.1:c.296C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2835C>G
  hgvsp: ENST00000457346.2:c.2835C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2172C>G
  hgvsp: ENST00000450649.2:c.2172C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.101C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2664C>G
  hgvsp: ENST00000520467.1:c.2664C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.310C>G
  hgvsp: ENST00000528651.1:c.310C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2748C>G
  hgvsp: ENST00000309263.3:c.2748C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1470C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4486G>C
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val888Val
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

11-9047276-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047276
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047276
    reference: chr 11
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2656T>A
  hgvsp: ENSP00000429969.1:p.Phe886Ile
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.302T>A
  hgvsp: ENSP00000435902.1:p.Phe102Ile
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2827T>A
  hgvsp: ENSP00000390481.2:p.Phe943Ile
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2164T>A
  hgvsp: ENSP00000415187.2:p.Phe722Ile
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2740T>A
  hgvsp: ENSP00000310658.3:p.Phe914Ile
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4478A>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.288T>A
  hgvsp: ENSP00000432828.1:p.Phe97Ile
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1462T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.93T>A
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18890
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4290
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7428
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe886Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

11-9047284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047284
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047284
    reference: chr 11
allele count: 15
allele frequency: 1.235584843492587e-4
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.294C>T
  hgvsp: ENSP00000435902.1:p.Ala99Val
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4470G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1454C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2819C>T
  hgvsp: ENSP00000390481.2:p.Ala940Val
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2156C>T
  hgvsp: ENSP00000415187.2:p.Ala719Val
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2732C>T
  hgvsp: ENSP00000310658.3:p.Ala911Val
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.85C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2648C>T
  hgvsp: ENSP00000429969.1:p.Ala883Val
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.280C>T
  hgvsp: ENSP00000432828.1:p.Ala94Val
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6078
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4287
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23360
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala883Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-9047285-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047285
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047285
    reference: chr 11
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1453G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2647G>A
  hgvsp: ENSP00000429969.1:p.Ala883Thr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2731G>A
  hgvsp: ENSP00000310658.3:p.Ala911Thr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.293G>A
  hgvsp: ENSP00000435902.1:p.Ala99Thr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.84G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2155G>A
  hgvsp: ENSP00000415187.2:p.Ala719Thr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.279G>A
  hgvsp: ENSP00000432828.1:p.Ala94Thr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2818G>A
  hgvsp: ENSP00000390481.2:p.Ala940Thr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4469C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala883Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

11-9047286-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047286
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047286
    reference: chr 11
allele count: 4
allele frequency: 3.29489291598023e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1452C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2730C>T
  hgvsp: ENST00000309263.3:c.2730C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2817C>T
  hgvsp: ENST00000457346.2:c.2817C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2646C>T
  hgvsp: ENST00000520467.1:c.2646C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.83C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2154C>T
  hgvsp: ENST00000450649.2:c.2154C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.292C>T
  hgvsp: ENST00000528651.1:c.292C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4468G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.278C>T
  hgvsp: ENST00000519202.1:c.278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6079
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser882Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD

11-9047302-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047302
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047302
    reference: chr 11
allele count: 4
allele frequency: 3.294675803900896e-5
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.276C>A
  hgvsp: ENSP00000435902.1:p.Ser93Tyr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.67C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2801C>A
  hgvsp: ENSP00000390481.2:p.Ser934Tyr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2630C>A
  hgvsp: ENSP00000429969.1:p.Ser877Tyr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2138C>A
  hgvsp: ENSP00000415187.2:p.Ser713Tyr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2714C>A
  hgvsp: ENSP00000310658.3:p.Ser905Tyr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.262C>A
  hgvsp: ENSP00000432828.1:p.Ser88Tyr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1436C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4452G>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10955
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2985
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4289
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser877Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

11-9047310-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047310
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047310
    reference: chr 11
allele count: 25
allele frequency: 2.05917237743806e-4
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2793G>A
  hgvsp: ENST00000457346.2:c.2793G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1428G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.59G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2130G>A
  hgvsp: ENST00000450649.2:c.2130G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.254G>A
  hgvsp: ENST00000519202.1:c.254G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4444C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.268G>A
  hgvsp: ENST00000528651.1:c.268G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2706G>A
  hgvsp: ENST00000309263.3:c.2706G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2622G>A
  hgvsp: ENST00000520467.1:c.2622G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18869
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10951
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln874Gln
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/11-9047325-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047325
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047325
    reference: chr 11
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.253G>T
  hgvsp: ENSP00000435902.1:p.Lys85Asn
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.44G>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.239G>T
  hgvsp: ENSP00000432828.1:p.Lys80Asn
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2778G>T
  hgvsp: ENSP00000390481.2:p.Lys926Asn
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1413G>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2691G>T
  hgvsp: ENSP00000310658.3:p.Lys897Asn
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2607G>T
  hgvsp: ENSP00000429969.1:p.Lys869Asn
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2115G>T
  hgvsp: ENSP00000415187.2:p.Lys705Asn
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4429C>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys869Asn
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

11-9047328-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047328
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047328
    reference: chr 11
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2604A>G
  hgvsp: ENST00000520467.1:c.2604A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.250A>G
  hgvsp: ENST00000528651.1:c.250A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.236A>G
  hgvsp: ENST00000519202.1:c.236A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2688A>G
  hgvsp: ENST00000309263.3:c.2688A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2112A>G
  hgvsp: ENST00000450649.2:c.2112A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.41A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2775A>G
  hgvsp: ENST00000457346.2:c.2775A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1410A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4426T>C
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser868Ser
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD

11-9047343-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047343
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047343
    reference: chr 11
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.221C>T
  hgvsp: ENST00000519202.1:c.221C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.235C>T
  hgvsp: ENST00000528651.1:c.235C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2589C>T
  hgvsp: ENST00000520467.1:c.2589C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.26C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2097C>T
  hgvsp: ENST00000450649.2:c.2097C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2673C>T
  hgvsp: ENST00000309263.3:c.2673C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4411G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2760C>T
  hgvsp: ENST00000457346.2:c.2760C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1395C>T
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15227
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10960
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4286
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala863Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

11-9047345-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047345
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047345
    reference: chr 11
allele count: 5
allele frequency: 4.11936265221045e-5
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2095G>A
  hgvsp: ENSP00000415187.2:p.Ala699Thr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2671G>A
  hgvsp: ENSP00000310658.3:p.Ala891Thr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2587G>A
  hgvsp: ENSP00000429969.1:p.Ala863Thr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2758G>A
  hgvsp: ENSP00000390481.2:p.Ala920Thr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.24G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.233G>A
  hgvsp: ENSP00000435902.1:p.Ala79Thr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1393G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4409C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.219G>A
  hgvsp: ENSP00000432828.1:p.Ala74Thr
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala863Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

11-9047346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047346
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047346
    reference: chr 11
allele count: 5
allele frequency: 4.11936265221045e-5
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.232C>T
  hgvsp: ENST00000528651.1:c.232C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.23C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2757C>T
  hgvsp: ENST00000457346.2:c.2757C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2586C>T
  hgvsp: ENST00000520467.1:c.2586C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2094C>T
  hgvsp: ENST00000450649.2:c.2094C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.218C>T
  hgvsp: ENST00000519202.1:c.218C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4408G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2670C>T
  hgvsp: ENST00000309263.3:c.2670C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1392C>T
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5101
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile862Ile
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

11-9047348-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047348
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047347
    reference: chr 11
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2667delC
  hgvsp: ENSP00000310658.3:p.Ile890SerfsTer30
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4402delG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.229delC
  hgvsp: ENSP00000435902.1:p.Ile78SerfsTer30
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.215delC
  hgvsp: ENSP00000432828.1:p.Ile73SerfsTer30
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1389delC
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2754delC
  hgvsp: ENSP00000390481.2:p.Ile919SerfsTer30
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2091delC
  hgvsp: ENSP00000415187.2:p.Ile698SerfsTer30
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2583delC
  hgvsp: ENSP00000429969.1:p.Ile862SerfsTer30
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.20delC
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6085
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11698
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile862SerfsTer30
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: TG
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

11-9047349-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047349
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047349
    reference: chr 11
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.20C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.215C>G
  hgvsp: ENST00000519202.1:c.215C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.229C>G
  hgvsp: ENST00000528651.1:c.229C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2583C>G
  hgvsp: ENST00000520467.1:c.2583C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2091C>G
  hgvsp: ENST00000450649.2:c.2091C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2754C>G
  hgvsp: ENST00000457346.2:c.2754C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4405G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2667C>G
  hgvsp: ENST00000309263.3:c.2667C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1389C>G
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10960
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18820
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7428
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro861Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

11-9047353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047353
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047353
    reference: chr 11
allele count: 11
allele frequency: 9.065137130801688e-5
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1385G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.211G>A
  hgvsp: ENSP00000432828.1:p.Arg71His
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.225G>A
  hgvsp: ENSP00000435902.1:p.Arg76His
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2750G>A
  hgvsp: ENSP00000390481.2:p.Arg917His
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2663G>A
  hgvsp: ENSP00000310658.3:p.Arg888His
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2579G>A
  hgvsp: ENSP00000429969.1:p.Arg860His
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2087G>A
  hgvsp: ENSP00000415187.2:p.Arg696His
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.16G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4401C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 18786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23286
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11705
  bin: 9.75e1
  variant carriers: 11
hgvs: p.Arg860His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

11-9047354-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047354
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047354
    reference: chr 11
allele count: 4
allele frequency: 3.296576505299247e-5
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1384C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2086C>T
  hgvsp: ENSP00000415187.2:p.Arg696Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2749C>T
  hgvsp: ENSP00000390481.2:p.Arg917Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4400G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.224C>T
  hgvsp: ENSP00000435902.1:p.Arg76Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2578C>T
  hgvsp: ENSP00000429969.1:p.Arg860Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.210C>T
  hgvsp: ENSP00000432828.1:p.Arg71Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2662C>T
  hgvsp: ENSP00000310658.3:p.Arg888Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.15C>T
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15222
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10952
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18783
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11699
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5102
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg860Cys
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

11-9047358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047358
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047358
    reference: chr 11
allele count: 3
allele frequency: 2.473614775725594e-5
allele num: 121280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2745C>T
  hgvsp: ENST00000457346.2:c.2745C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1380C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.220C>T
  hgvsp: ENST00000528651.1:c.220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2082C>T
  hgvsp: ENST00000450649.2:c.2082C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.11C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2574C>T
  hgvsp: ENST00000520467.1:c.2574C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2658C>T
  hgvsp: ENST00000309263.3:c.2658C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.206C>T
  hgvsp: ENST00000519202.1:c.206C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4396G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18723
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6089
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11700
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr858Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

11-9047366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047366
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047366
    reference: chr 11
allele count: 1
allele frequency: 8.25559316436886e-6
allele num: 121130
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2650C>T
  hgvsp: ENSP00000310658.3:p.Gln884Ter
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2074C>T
  hgvsp: ENSP00000415187.2:p.Gln692Ter
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000532532
  gene symbol: SCUBE2
  hgvsc: ENST00000532532.1:n.3C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4388G>A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.198C>T
  hgvsp: ENSP00000432828.1:p.Gln67Ter
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2566C>T
  hgvsp: ENSP00000429969.1:p.Gln856Ter
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2737C>T
  hgvsp: ENSP00000390481.2:p.Gln913Ter
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.212C>T
  hgvsp: ENSP00000435902.1:p.Gln72Ter
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1372C>T
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18589
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6087
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15184
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln856Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

11-9047370-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047370
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047370
    reference: chr 11
allele count: 3
allele frequency: 2.478888136041381e-5
allele num: 121022
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.208C>G
  hgvsp: ENST00000528651.1:c.208C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.194C>G
  hgvsp: ENST00000519202.1:c.194C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1368C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2646C>G
  hgvsp: ENST00000309263.3:c.2646C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4384G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2070C>G
  hgvsp: ENST00000450649.2:c.2070C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2562C>G
  hgvsp: ENST00000520467.1:c.2562C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2733C>G
  hgvsp: ENST00000457346.2:c.2733C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10910
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2984
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4280
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7374
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5090
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11702
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Thr854Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

11-9047377-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047377
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047377
    reference: chr 11
allele count: 1
allele frequency: 8.276912380605539e-6
allele num: 120818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1361A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2555A>G
  hgvsp: ENSP00000429969.1:p.Tyr852Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.187A>G
  hgvsp: ENSP00000432828.1:p.Tyr63Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.201A>G
  hgvsp: ENSP00000435902.1:p.Tyr68Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4377T>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2063A>G
  hgvsp: ENSP00000415187.2:p.Tyr688Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2639A>G
  hgvsp: ENSP00000310658.3:p.Tyr880Cys
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2726A>G
  hgvsp: ENSP00000390481.2:p.Tyr909Cys
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6082
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22546
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Tyr852Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

11-9047389-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047389
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047389
    reference: chr 11
allele count: 3
allele frequency: 2.496712661662145e-5
allele num: 120158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2627C>A
  hgvsp: ENSP00000310658.3:p.Ser876Tyr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.189C>A
  hgvsp: ENSP00000435902.1:p.Ser64Tyr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.175C>A
  hgvsp: ENSP00000432828.1:p.Ser59Tyr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2051C>A
  hgvsp: ENSP00000415187.2:p.Ser684Tyr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2543C>A
  hgvsp: ENSP00000429969.1:p.Ser848Tyr
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1349C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4365G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2714C>A
  hgvsp: ENSP00000390481.2:p.Ser905Tyr
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17586
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3704
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11702
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21522
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser848Tyr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS

11-9047409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047409
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047409
    reference: chr 11
allele count: 1
allele frequency: 8.39602364320258e-6
allele num: 119104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2702-8C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4345G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-8C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2615-8C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.177-8C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.163-8C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2531-8C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1329C>T
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19971
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
hgvs: c.2531-8C>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

11-9047422-A-AGGGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047422
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047426
    reference: chr 11
allele count: 1
allele frequency: 8.43981567442567e-6
allele num: 118486
alternate allele: AGGGT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2531-25_2531-22dupACCC
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4328_383-4325dupTGGG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.177-25_177-22dupACCC
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-25_2039-22dupACCC
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2702-25_2702-22dupACCC
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1312_1315dupACCC
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.163-25_163-22dupACCC
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2615-25_2615-22dupACCC
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6081
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4273
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7052
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

11-9047423-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047423
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047423
    reference: chr 11
allele count: 1
allele frequency: 8.442808415791428e-6
allele num: 118444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4331G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2702-22C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2531-22C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1315C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-22C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2615-22C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.177-22C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.163-22C>G
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15374
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13954
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11701
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5068
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

11-9047425-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047425
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047425
    reference: chr 11
allele count: 1
allele frequency: 8.452370890034655e-6
allele num: 118310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2615-24C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-24C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1313C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4329G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.163-24C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2531-24C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.177-24C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2702-24C>T
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13917
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2078
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3684
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18573
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

11-9047429-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047429
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047429
    reference: chr 11
allele count: 1
allele frequency: 8.470843357164639e-6
allele num: 118052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.177-28C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2702-28C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1309C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2531-28C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4325G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-28C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2615-28C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.163-28C>G
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13892
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10782
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2983
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

11-9047431-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047431
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047431
    reference: chr 11
allele count: 1
allele frequency: 8.480037990570198e-6
allele num: 117924
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2702-30A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.163-30A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.177-30A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2531-30A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4323T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1307A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-30A>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2615-30A>G
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14763
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7012
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/11-9047434-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047434
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047434
    reference: chr 11
allele count: 1
allele frequency: 8.500221005746149e-6
allele num: 117644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2615-33T>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4320A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1304T>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-33T>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2531-33T>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.177-33T>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.163-33T>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2702-33T>G
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2946
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 907
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6921
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4253
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2941
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

11-9047436-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047436
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047436
    reference: chr 11
allele count: 501
allele frequency: 4.259841850182807e-3
allele num: 117610
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.163-35C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-35C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1302C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2531-35C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4318G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.177-35C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2615-35C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2702-35C>A
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 4.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 14196
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13706
  bin: 2.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 5.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10706
  bin: 3.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 4.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 2938
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 3.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 5
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

11-9047438-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047438
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047438
    reference: chr 11
allele count: 2
allele frequency: 1.704942628680545e-5
allele num: 117306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-37G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2615-37G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1300G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.177-37G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4316C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.163-37G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2702-37G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2531-37G>A
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1339
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3646
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11794
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3639
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4239
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

11-9047440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9047440
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9047440
    reference: chr 11
allele count: 2
allele frequency: 1.709869365980439e-5
allele num: 116968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-4314C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000175356
  ensembl transcript: ENST00000524317
  gene symbol: SCUBE2
  hgvsc: ENST00000524317.1:n.1298G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2531-39G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2702-39G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.163-39G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.177-39G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2615-39G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-39G>A
  variant of: http://identifiers.org/hgnc/30425
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3676
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13533
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4982
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

11-9048864-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9048864
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9048864
    reference: chr 11
allele count: 1
allele frequency: 9.653068710543081e-6
allele num: 103594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-1463T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2530+47T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-2890A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.162+47T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2701+47T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2614+47T>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.176+47T>A
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16693
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13679
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12425
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6782
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4288
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7834
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2332
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

11-9048865-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9048865
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9048865
    reference: chr 11
allele count: 1
allele frequency: 9.571393020540209e-6
allele num: 104478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2701+46C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2530+46C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2614+46C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-1464C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.162+46C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-2889G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.176+46C>T
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11670
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4962
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8067
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6749
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4278
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13683
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

11-9048870-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9048870
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9048870
    reference: chr 11
allele count: 1
allele frequency: 9.554383551173278e-6
allele num: 104664
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.162+41G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2701+41G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.176+41G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-2884C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2614+41G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2530+41G>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-1469G>C
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16196
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9853
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8402
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

11-9048875-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9048875
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9048875
    reference: chr 11
allele count: 1
allele frequency: 9.484066767830045e-6
allele num: 105440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-1474G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2614+36G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-2879C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2530+36G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.176+36G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2701+36G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.162+36G>A
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18567
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6431
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2178
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5422
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21816
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

11-9048898-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9048898
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9048898
    reference: chr 11
allele count: 6
allele frequency: 5.3642313056539e-5
allele num: 111852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2614+13C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2530+13C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.162+13C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2701+13C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-2856G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-1497C>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.176+13C>A
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11354
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30335
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1658
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2683
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5651
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

11-9048901-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9048901
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9048901
    reference: chr 11
allele count: 1
allele frequency: 8.875477056891809e-6
allele num: 112670
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-2853T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2701+10A>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-1500A>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.162+10A>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2614+10A>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2530+10A>C
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.176+10A>C
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37949
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3559
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum

11-9048904-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9048904
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9048904
    reference: chr 11
allele count: 3
allele frequency: 2.632456432846036e-5
allele num: 113962
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.176+7C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2701+7C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-2850G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-1503C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2530+7C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.162+7C>G
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2614+7C>G
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2457
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12256
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32645
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
hgvs: c.2530+7C>G
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

11-9048906-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9048906
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9048906
    reference: chr 11
allele count: 1
allele frequency: 8.737439930100481e-6
allele num: 114450
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2530+5G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-1505G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.162+5G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.176+5G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2614+5G>A
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-2848C>T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2701+5G>A
  variant of: http://identifiers.org/hgnc/30425
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33337
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12472
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4137
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41173
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 3.25e1
  variant carriers: 0
hgvs: c.2530+5G>A
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD

11-9048907-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 9048907
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 9048907
    reference: chr 11
allele count: 7
allele frequency: 6.092678341398879e-5
allele num: 114892
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000432828
  ensembl transcript: ENST00000519202
  gene symbol: SCUBE2
  hgvsc: ENST00000519202.1:c.162+4C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000310658
  ensembl transcript: ENST00000309263
  gene symbol: SCUBE2
  hgvsc: ENST00000309263.3:c.2614+4C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000435902
  ensembl transcript: ENST00000528651
  gene symbol: SCUBE2
  hgvsc: ENST00000528651.1:c.176+4C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000429969
  ensembl transcript: ENST00000520467
  gene symbol: SCUBE2
  hgvsc: ENST00000520467.1:c.2530+4C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000415187
  ensembl transcript: ENST00000450649
  gene symbol: SCUBE2
  hgvsc: ENST00000450649.2:c.2039-1506C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000175356
  ensembl protein: ENSP00000390481
  ensembl transcript: ENST00000457346
  gene symbol: SCUBE2
  hgvsc: ENST00000457346.2:c.2701+4C>T
  variant of: http://identifiers.org/hgnc/30425
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253973
  ensembl transcript: ENST00000531592
  gene symbol: RP11-467K18.2
  hgvsc: ENST00000531592.1:n.383-2847G>A
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33773
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3855
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2623
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1576
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41898
  bin: 6.25e1
  variant carriers: 0
hgvs: c.2530+4C>T
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: FS

GenotypeQuality
all individuals: 403
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1542
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.352813852813853e-4
allele num: 7392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

DP
type: SiteQuality
SIO_000300: 1.34526e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.56e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.692e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -7.454e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.17e0

GenotypeQuality
all individuals: 1241
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2582
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1644
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11413
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4028
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2031
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8794
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1890
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4645
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1951
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64810
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.211528986697323e-5
allele num: 12178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

DP
type: SiteQuality
SIO_000300: 1.710885e6

MQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 2031
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3427
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6154
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8794
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2211
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2807
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1951
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2998
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2582
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542971763616726e-5
allele num: 64810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.98e0

VQSLOD
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.710885e6

QD
type: SiteQuality
SIO_000300: 1.316e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQRankSum
type: SiteQuality
SIO_000300: -2.14e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.19e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1949
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3983
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2436
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1941
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4623
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11264
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2021
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 1.950458357714063e-4
allele num: 10254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542400592281827e-5
allele num: 64834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

DP
type: SiteQuality
SIO_000300: 1.718345e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 1.474e1

GenotypeQuality
all individuals: 1847
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1906
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1099
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3454
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1189
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1961
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4656
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4005
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1953
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6352
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2839
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541592156379108e-5
allele num: 64868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.616e1

DP
type: SiteQuality
SIO_000300: 1.727247e6

VQSLOD
type: SiteQuality
SIO_000300: 9.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.08e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 1793
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6404
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1970
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11409
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 648
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4692
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4010
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3455
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.759635599159075e-5
allele num: 11416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

FS
type: SiteQuality
SIO_000300: 3.606e0

MQ
type: SiteQuality
SIO_000300: 5.952e1

VQSLOD
type: SiteQuality
SIO_000300: -4.979e-1

DP
type: SiteQuality
SIO_000300: 1.736612e6

QD
type: SiteQuality
SIO_000300: 1.868e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

GenotypeQuality
all individuals: 6467
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11422
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2865
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2861
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 244
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variant carriers: 0

GenotypeQuality
all individuals: 934
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1979
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variant carriers: 0

GenotypeQuality
all individuals: 4049
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15422
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64922
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.950078003120125e-4
allele num: 10256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.374e0

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

QD
type: SiteQuality
SIO_000300: 1.305e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

DP
type: SiteQuality
SIO_000300: 1.749062e6

FS
type: SiteQuality
SIO_000300: 3.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1055
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6715
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 979
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4850
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4137
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11440
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2028
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.737098344693281e-5
allele num: 10270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65076
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

FS
type: SiteQuality
SIO_000300: 6.851e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.507e0

QD
type: SiteQuality
SIO_000300: 1.186e1

DP
type: SiteQuality
SIO_000300: 1.769305e6

MQ
type: SiteQuality
SIO_000300: 5.941e1

VQSLOD
type: SiteQuality
SIO_000300: -1.07e0

GenotypeQuality
all individuals: 3616
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2924
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17862
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4906
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 199
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variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
all individuals: 4204
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2053
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6863
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.850525985241011e-5
allele num: 12738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

QD
type: SiteQuality
SIO_000300: 1.111e1

FS
type: SiteQuality
SIO_000300: 3.01e0

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

MQ
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SIO_000300: 5.928e1

BaseQRankSum
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SIO_000300: -3.034e0

DP
type: SiteQuality
SIO_000300: 1.785698e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

GenotypeQuality
all individuals: 1170
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11460
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 4.75e1
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GenotypeQuality
all individuals: 6855
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12746
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.533460099368214e-5
allele num: 65212
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.053e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.28e-1

DP
type: SiteQuality
SIO_000300: 1.789535e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

QD
type: SiteQuality
SIO_000300: 1.493e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.171e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.93e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.052596233096249e-5
allele num: 65518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 4.9e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: -2.45e0

MQ
type: SiteQuality
SIO_000300: 5.913e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

DP
type: SiteQuality
SIO_000300: 1.81193e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.453786523553965e-5
allele num: 13416
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.287e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.482e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 9.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

FS
type: SiteQuality
SIO_000300: 5.336e0

DP
type: SiteQuality
SIO_000300: 1.817296e6

GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515886490419597e-5
allele num: 65968
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

QD
type: SiteQuality
SIO_000300: 1.405e1

FS
type: SiteQuality
SIO_000300: 1.793e0

DP
type: SiteQuality
SIO_000300: 1.837211e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.585e0

VQSLOD
type: SiteQuality
SIO_000300: -1.329e0

MQ
type: SiteQuality
SIO_000300: 5.877e1

MQRankSum
type: SiteQuality
SIO_000300: -1.359e0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 84
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.298364061282784e-4
allele num: 15404
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.11e-1

DP
type: SiteQuality
SIO_000300: 1.856565e6

FS
type: SiteQuality
SIO_000300: 1.616e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.209e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

MQ
type: SiteQuality
SIO_000300: 5.982e1

QD
type: SiteQuality
SIO_000300: 1.349e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15454
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.879e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.266e0

ClippingRankSum
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SIO_000300: -1.437e0

QD
type: SiteQuality
SIO_000300: 1.281e1

DP
type: SiteQuality
SIO_000300: 1.857216e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.379e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.013682116810319e-5
allele num: 66364
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15572
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ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
SIO_000300: 7.007e0

VQSLOD
type: SiteQuality
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MQRankSum
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DP
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.28e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.366993505666624e-5
allele num: 15706
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.620935154897056e-5
allele num: 10394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.393e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.329113924050633e-5
allele num: 15800
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.25e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.821e0

DP
type: SiteQuality
SIO_000300: 1.863212e6

QD
type: SiteQuality
SIO_000300: 9.19e0

GenotypeQuality
all individuals: 5107
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504211793020457e-5
allele num: 66480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.86591e6

VQSLOD
type: SiteQuality
SIO_000300: -1.063e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.493e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.89e-1

FS
type: SiteQuality
SIO_000300: 9.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.26e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 27
bin: 5.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00543984612148e-5
allele num: 66546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

FS
type: SiteQuality
SIO_000300: 6.825e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.129e0

QD
type: SiteQuality
SIO_000300: 1.24e1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 1.869431e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.95e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.21e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 800
allele frequency: 1.200444164340806e-2
allele num: 66642
num of homozygotes: 6

African
type: Population
allele count: 22
allele frequency: 2.114164904862579e-3
allele num: 10406
num of homozygotes: 1

Latino
type: Population
allele count: 193
allele frequency: 1.666954569010192e-2
allele num: 11578
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 119
allele frequency: 1.799213788932567e-2
allele num: 6614
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 118
allele frequency: 7.172380257719426e-3
allele num: 16452
num of homozygotes: 1

Other
type: Population
allele count: 26
allele frequency: 2.869757174392936e-2
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

FS
type: SiteQuality
SIO_000300: 1.303e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

QD
type: SiteQuality
SIO_000300: 1.396e1

DP
type: SiteQuality
SIO_000300: 1.964333e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.04e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23228
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 42
allele frequency: 2.548853016142736e-3
allele num: 16478
num of homozygotes: 1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

QD
type: SiteQuality
SIO_000300: 1.476e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.72e-2

DP
type: SiteQuality
SIO_000300: 1.892842e6

FS
type: SiteQuality
SIO_000300: 3.255e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499610101373643e-5
allele num: 66684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.361e1

DP
type: SiteQuality
SIO_000300: 1.892306e6

FS
type: SiteQuality
SIO_000300: 1.195e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.306e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.892455e6

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

MQ
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.46e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.79e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

Other
type: Population
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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FS
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
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East Asian
type: Population
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 3.298647554502654e-4
allele num: 66694
num of homozygotes: 0

Other
type: Population
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: -4.37e-1

ReadPosRankSum
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SIO_000300: 3.74e-1

InbreedingCoeff
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SIO_000300: -4.0e-4

MQRankSum
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MQ
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QD
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DP
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SIO_000300: 1.893973e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 2.31107002542177e-4
allele num: 8654
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South Asian
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allele num: 16500
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QD
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ClippingRankSum
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BaseQRankSum
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MQ
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FS
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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Other
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InbreedingCoeff
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ReadPosRankSum
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FS
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MQRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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QD
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
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African
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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FS
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SIO_000300: 2.104e0

BaseQRankSum
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VQSLOD
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DP
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MQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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ClippingRankSum
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MQ
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SIO_000300: 5.964e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66706
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MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.951e1

BaseQRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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MQ
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ClippingRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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FS
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MQRankSum
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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African
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East Asian
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South Asian
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European (Non-Finnish)
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DP
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VQSLOD
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MQ
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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Other
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South Asian
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East Asian
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Latino
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European (Finnish)
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InbreedingCoeff
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QD
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BaseQRankSum
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FS
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DP
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MQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Other
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European (Non-Finnish)
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allele num: 66730
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African
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South Asian
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Latino
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East Asian
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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BaseQRankSum
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QD
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MQ
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VQSLOD
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
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allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
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DP
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QD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
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VQSLOD
type: SiteQuality
SIO_000300: 8.169999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 5.993586862057598e-5
allele num: 66738
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
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MQ
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele count: 25
allele frequency: 1.514233797698365e-3
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQ
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SIO_000300: 5.966e1

BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

FS
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ClippingRankSum
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DP
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ReadPosRankSum
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MQRankSum
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66730
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
SIO_000300: -5.48e-1

FS
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

East Asian
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
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Latino
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQ
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DP
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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African
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European (Non-Finnish)
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Other
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European (Finnish)
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South Asian
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FS
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MQ
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QD
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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East Asian
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Other
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South Asian
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African
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InbreedingCoeff
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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South Asian
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African
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Other
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European (Non-Finnish)
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Latino
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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DP
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InbreedingCoeff
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FS
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MQ
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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African
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Other
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.011e0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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QD
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 6.009e1

DP
type: SiteQuality
SIO_000300: 1.893633e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
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MQRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.082e0

ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 1.649175412293853e-4
allele num: 66700
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16484
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele num: 908
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
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MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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SIO_000300: 4.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.09e-1

FS
type: SiteQuality
SIO_000300: 5.43e-1

DP
type: SiteQuality
SIO_000300: 1.894518e6

QD
type: SiteQuality
SIO_000300: 1.198e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.998590662388677e-5
allele num: 66698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.37e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

FS
type: SiteQuality
SIO_000300: 5.169e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.01e-1

DP
type: SiteQuality
SIO_000300: 1.893545e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499565126113427e-5
allele num: 66686
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.092e0

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.59e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

DP
type: SiteQuality
SIO_000300: 1.892801e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 4.279e0

InbreedingCoeff
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SIO_000300: 1.83e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-2

QD
type: SiteQuality
SIO_000300: 1.37e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
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South Asian
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allele count: 1
allele frequency: 6.126700159294204e-5
allele num: 16322
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.86e-1

BaseQRankSum
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DP
type: SiteQuality
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MQ
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ClippingRankSum
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FS
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MQRankSum
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QD
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.882952142994427e-4
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66632
num of homozygotes: 0

East Asian
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Other
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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South Asian
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FS
type: SiteQuality
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

European (Finnish)
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allele num: 6614
num of homozygotes: 0

South Asian
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Other
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East Asian
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allele num: 8654
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African
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allele count: 0
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Latino
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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QD
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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African
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allele frequency: 9.619084263178146e-5
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European (Non-Finnish)
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allele frequency: 1.504981488727689e-5
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Other
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European (Finnish)
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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QD
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InbreedingCoeff
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MQ
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5109391998066e-5
allele num: 66184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.716e1

DP
type: SiteQuality
SIO_000300: 1.848902e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.38e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.419e0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.931928462498267e-5
allele num: 14426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66014
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11544
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DP
type: SiteQuality
SIO_000300: 1.835102e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.444e1

QD
type: SiteQuality
SIO_000300: 1.122e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14390
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514921981517952e-5
allele num: 66010
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.145e0

VQSLOD
type: SiteQuality
SIO_000300: 7.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.9e-2

DP
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.47e-1

FS
type: SiteQuality
SIO_000300: 4.041e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

QD
type: SiteQuality
SIO_000300: 1.531e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 1
allele frequency: 9.633911368015414e-5
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65984
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14294
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.239e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.56e-1

QD
type: SiteQuality
SIO_000300: 1.4e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 1.832051e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.516990291262136e-5
allele num: 65920
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.959e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.653e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -8.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

DP
type: SiteQuality
SIO_000300: 1.829523e6

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14044
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

VQSLOD
type: SiteQuality
SIO_000300: 7.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.847e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.0e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.069e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.827808e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.51952590791673e-5
allele num: 65810
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.23e0

QD
type: SiteQuality
SIO_000300: 1.141e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.912e1

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.406e-1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 493

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 5.788153579008296e-4
allele num: 10366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 341
allele frequency: 5.182055802078901e-3
allele num: 65804
num of homozygotes: 1

European (Finnish)
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allele count: 145
allele frequency: 2.194309927360775e-2
allele num: 6608
num of homozygotes: 4

Latino
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allele count: 5
allele frequency: 4.341031429067547e-4
allele num: 11518
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 4
allele frequency: 4.640371229698376e-3
allele num: 862
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13828
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.29e0

MQ
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.137e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521375323292256e-5
allele num: 65730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

FS
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
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SIO_000300: -3.133e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 806
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.046736944732192e-5
allele num: 65644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.824549e6

MQRankSum
type: SiteQuality
SIO_000300: -1.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.114e0

QD
type: SiteQuality
SIO_000300: 1.31e1

GenotypeQuality
all individuals: 7080
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.736111111111111e-5
allele num: 57600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7030
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14030
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

DP
type: SiteQuality
SIO_000300: 1.15416e6

QD
type: SiteQuality
SIO_000300: 1.039e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.79e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.720814977973568e-5
allele num: 58112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8834
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.91e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e-1

DP
type: SiteQuality
SIO_000300: 1.157375e6

QD
type: SiteQuality
SIO_000300: 3.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.512e0

MQ
type: SiteQuality
SIO_000300: 5.02e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2373
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.718980988070272e-5
allele num: 58174
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9836
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 1.183184e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.75e-1

QD
type: SiteQuality
SIO_000300: 1.297e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.71e-1

GenotypeQuality
all individuals: 405
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4014
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2501
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7196
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14252
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.706077046439417e-5
allele num: 58614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5742
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.54e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.16e-1

DP
type: SiteQuality
SIO_000300: 1.220105e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -2.709e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.922e0

MQ
type: SiteQuality
SIO_000300: 5.824e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.94e-1

QD
type: SiteQuality
SIO_000300: 7.73e0

GenotypeQuality
all individuals: 716
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2042
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3509
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2618
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 451
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6020
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 6.313131313131314e-4
allele num: 7920
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.199040767386091e-3
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61990
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9414
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15052
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.447e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

DP
type: SiteQuality
SIO_000300: 1.393083e6

FS
type: SiteQuality
SIO_000300: 3.131e0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.66e-1

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2614
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6022046335758e-5
allele num: 62414
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.28e-1

DP
type: SiteQuality
SIO_000300: 1.412291e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.53e0

QD
type: SiteQuality
SIO_000300: 5.42e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.02e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2619
bin: 9.75e1
variant carriers: 3

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63008
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.96078431372549e-4
allele num: 15300
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2637e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 8.52e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.854e0

DP
type: SiteQuality
SIO_000300: 1.43201e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 560
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 453
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variant carriers: 0

GenotypeQuality
all individuals: 2619
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.510416666666667e-5
allele num: 15360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10950
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63212
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6148
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.443785e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e-1

FS
type: SiteQuality
SIO_000300: 7.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 9.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.745e-1

GenotypeQuality
all individuals: 336
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3927
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variant carriers: 0

GenotypeQuality
all individuals: 869
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variant carriers: 0

GenotypeQuality
all individuals: 459
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GenotypeQuality
all individuals: 242
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.055076037813399e-4
allele num: 9732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.884196915702167e-5
allele num: 63418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10994
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.261e1

FS
type: SiteQuality
SIO_000300: 5.1e-1