11-280638-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280638
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280638
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 7104
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.904G>A
  hgvsp: ENSP00000309767.4:p.Ala302Thr
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.904G>A
  hgvsp: ENSP00000433617.1:p.Ala302Thr
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala302Thr
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 40
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

11-280647-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280647
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280647
    reference: chr 11
allele count: 1
allele frequency: 1.154467790348649e-4
allele num: 8662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.913G>T
  hgvsp: ENSP00000433617.1:p.Ala305Ser
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.913G>T
  hgvsp: ENSP00000309767.4:p.Ala305Ser
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala305Ser
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 60
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

11-280648-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280648
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280648
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 8804
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.914C>T
  hgvsp: ENSP00000309767.4:p.Ala305Val
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.914C>T
  hgvsp: ENSP00000433617.1:p.Ala305Val
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala305Val
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 62
  num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

11-280651-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280651
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280651
    reference: chr 11
allele count: 40
allele frequency: 4.212299915754001e-3
allele num: 9496
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.917G>A
  hgvsp: ENSP00000309767.4:p.Arg306Gln
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.917G>A
  hgvsp: ENSP00000433617.1:p.Arg306Gln
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23786
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 12
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.75e1
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 52
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genotype quality: GenotypeQuality
  all individuals: 18276
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  variant carriers: 1
hgvs: p.Arg306Gln
num of homozygotes: 2
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 406
  num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

11-280656-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280656
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280656
    reference: chr 11
allele count: 1
allele frequency: 8.960573476702509e-5
allele num: 11160
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.922C>T
  hgvsp: ENST00000312165.5:c.922C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.922C>T
  hgvsp: ENST00000534750.1:c.922C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu308Leu
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3678
  num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/11-280661-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280661
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280661
    reference: chr 11
allele count: 1
allele frequency: 7.744733581164808e-5
allele num: 12912
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.927C>A
  hgvsp: ENST00000312165.5:c.927C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.927C>A
  hgvsp: ENST00000534750.1:c.927C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly309Gly
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 3906
  num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

11-280663-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280663
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280663
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 14438
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.929G>T
  hgvsp: ENSP00000309767.4:p.Gly310Val
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.929G>T
  hgvsp: ENSP00000433617.1:p.Gly310Val
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 26447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.75e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly310Val
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 124
  num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

11-280664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280664
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280664
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 14880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.930G>A
  hgvsp: ENST00000534750.1:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.930G>A
  hgvsp: ENST00000312165.5:c.930G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
hgvs: p.Gly310Gly
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 774
  num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/11-280665-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280665
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280665
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 15546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.931C>A
  hgvsp: ENSP00000433617.1:p.Leu311Met
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.931C>A
  hgvsp: ENSP00000309767.4:p.Leu311Met
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 27559
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
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  variant carriers: 0
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genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 798
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17864
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2749
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu311Met
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 604
  num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

11-280667-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280667
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280667
    reference: chr 11
allele count: 0
allele frequency: 0.0e0
allele num: 16494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.933G>A
  hgvsp: ENST00000534750.1:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.933G>A
  hgvsp: ENST00000312165.5:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16797
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 560
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 813
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 26871
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
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genotype quality: GenotypeQuality
  all individuals: 247
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
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genotype quality: GenotypeQuality
  all individuals: 3
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genotype quality: GenotypeQuality
  all individuals: 215
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 42
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Leu311Leu
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 4394
  num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD

11-280672-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280672
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280672
    reference: chr 11
allele count: 7
allele frequency: 3.62844702467344e-4
allele num: 19292
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.938G>A
  hgvsp: ENSP00000433617.1:p.Ser313Asn
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.938G>A
  hgvsp: ENSP00000309767.4:p.Ser313Asn
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4311
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 1.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1570
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28351
  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3444
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 17
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser313Asn
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 10426
  num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

11-280672-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280672
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280672
    reference: chr 11
allele count: 1
allele frequency: 5.183495749533486e-5
allele num: 19292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.938G>C
  hgvsp: ENSP00000433617.1:p.Ser313Thr
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.938G>C
  hgvsp: ENSP00000309767.4:p.Ser313Thr
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4311
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
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genotype depth: GenotypeDepth
  all individuals: 14116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser313Thr
num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 814
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

11-280673-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280673
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280673
    reference: chr 11
allele count: 40091
allele frequency: 7.740770775409329e-1
allele num: 51792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.939C>T
  hgvsp: ENST00000534750.1:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.939C>T
  hgvsp: ENST00000312165.5:c.939C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7463
  bin: 1.75e1
  variant carriers: 7323
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 2.25e1
  variant carriers: 2983
genotype depth: GenotypeDepth
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  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 172
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  variant carriers: 170
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 438
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 1217
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 65
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 2232
genotype quality: GenotypeQuality
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  variant carriers: 819
genotype quality: GenotypeQuality
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  variant carriers: 9989
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 174
genotype quality: GenotypeQuality
  all individuals: 3063
  bin: 3.75e1
  variant carriers: 2978
genotype quality: GenotypeQuality
  all individuals: 3745
  bin: 3.25e1
  variant carriers: 3581
genotype quality: GenotypeQuality
  all individuals: 2002
  bin: 5.25e1
  variant carriers: 1976
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 1388
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 8.75e1
  variant carriers: 713
genotype quality: GenotypeQuality
  all individuals: 7550
  bin: 2.25e1
  variant carriers: 3936
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 6.75e1
  variant carriers: 1053
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 1.25e1
  variant carriers: 1679
genotype quality: GenotypeQuality
  all individuals: 4126
  bin: 7.5e0
  variant carriers: 1464
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 6.25e1
  variant carriers: 1464
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 7.75e1
  variant carriers: 762
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 5.75e1
  variant carriers: 1140
genotype quality: GenotypeQuality
  all individuals: 2465
  bin: 2.75e1
  variant carriers: 2271
genotype quality: GenotypeQuality
  all individuals: 3694
  bin: 1.75e1
  variant carriers: 3512
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 7.25e1
  variant carriers: 569
hgvs: p.Ser313Ser
num of homozygotes: 15184
population: Latino
  type: Population
  allele count: 3611
  allele frequency: 7.705932565087494e-1
  allele num: 4686
  num of homozygotes: 1296
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

11-280677-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280677
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280677
    reference: chr 11
allele count: 2
allele frequency: 3.701921297153223e-5
allele num: 54026
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.943G>A
  hgvsp: ENSP00000309767.4:p.Ala315Thr
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.943G>A
  hgvsp: ENSP00000433617.1:p.Ala315Thr
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18987
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9192
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13927
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4008
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 955
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7850
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2952
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3972
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4432
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2466
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14226
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5712
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala315Thr
num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2492
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP

11-280680-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 280680
    reference: chr 11
  end: Position
    type: ExactPosition
    position: 280680
    reference: chr 11
allele count: 2
allele frequency: 3.672689878066696e-5
allele num: 54456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000433617
  ensembl transcript: ENST00000534750
  gene symbol: NLRP6
  hgvsc: ENST00000534750.1:c.946C>T
  hgvsp: ENST00000534750.1:c.946C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22944
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000174885
  ensembl protein: ENSP00000309767
  ensembl transcript: ENST00000312165
  gene symbol: NLRP6
  hgvsc: ENST00000312165.5:c.946C>T
  hgvsp: ENST00000312165.5:c.946C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/22944
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13871
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5249
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2734
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7907
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15700
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4052
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5716
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4080
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2247
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2501
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1872
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu316Leu
num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 2622
  num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/9-117827007-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827007
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827007
    reference: chr 9
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8875G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3406G>T
  hgvsp: ENSP00000265131.4:p.Ala1136Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7303G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8875G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3406G>T
  hgvsp: ENSP00000411406.2:p.Ala1136Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8875G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8875G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3406G>T
  hgvsp: ENSP00000339553.4:p.Ala1136Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7303G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7303G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.185G>T
  hgvsp: ENSP00000445380.1:p.Ala63Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8875G>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1136Ser
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum

9-117827007-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827007
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827007
    reference: chr 9
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8875G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8875G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3406G>C
  hgvsp: ENSP00000339553.4:p.Ala1136Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8875G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7303G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3406G>C
  hgvsp: ENSP00000411406.2:p.Ala1136Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8875G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7303G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.185G>C
  hgvsp: ENSP00000445380.1:p.Ala63Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3406G>C
  hgvsp: ENSP00000265131.4:p.Ala1136Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7303G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8875G>C
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1136Pro
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

9-117827017-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827017
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827017
    reference: chr 9
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8865G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8865G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3396G>A
  hgvsp: ENST00000350763.4:c.3396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.175G>A
  hgvsp: ENST00000544972.1:c.175G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3396G>A
  hgvsp: ENST00000423613.2:c.3396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8865G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7313G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8865G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3396G>A
  hgvsp: ENST00000341037.4:c.3396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7313G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8865G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7313G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1132Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

9-117827018-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827018
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827018
    reference: chr 9
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3395C>T
  hgvsp: ENSP00000265131.4:p.Pro1132Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7314C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8864C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8864C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3395C>T
  hgvsp: ENSP00000339553.4:p.Pro1132Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7314C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.174C>T
  hgvsp: ENSP00000445380.1:p.Pro59Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3395C>T
  hgvsp: ENSP00000411406.2:p.Pro1132Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8864C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7314C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8864C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8864C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1132Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

9-117827018-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827018
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827018
    reference: chr 9
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3395C>A
  hgvsp: ENSP00000411406.2:p.Pro1132Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3395C>A
  hgvsp: ENSP00000265131.4:p.Pro1132Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7314C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8864C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8864C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3395C>A
  hgvsp: ENSP00000339553.4:p.Pro1132Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7314C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8864C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.174C>A
  hgvsp: ENSP00000445380.1:p.Pro59Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8864C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8864C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7314C>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9964
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1132Gln
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

9-117827023-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827023
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827023
    reference: chr 9
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7319C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8859C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7319C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3390C>T
  hgvsp: ENST00000423613.2:c.3390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8859C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3390C>T
  hgvsp: ENST00000341037.4:c.3390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3390C>T
  hgvsp: ENST00000350763.4:c.3390C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.169C>T
  hgvsp: ENST00000544972.1:c.169C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8859C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8859C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8859C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7319C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10399
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1130Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

9-117827024-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827024
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827024
    reference: chr 9
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3389A>T
  hgvsp: ENSP00000411406.2:p.Asp1130Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8858A>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8858A>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3389A>T
  hgvsp: ENSP00000339553.4:p.Asp1130Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7320A>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3389A>T
  hgvsp: ENSP00000265131.4:p.Asp1130Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8858A>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7320A>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.168A>T
  hgvsp: ENSP00000445380.1:p.Asp57Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8858A>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7320A>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8858A>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10398
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1130Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

9-117827025-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827025
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827025
    reference: chr 9
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.167G>A
  hgvsp: ENSP00000445380.1:p.Asp57Asn
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7321G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8857G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3388G>A
  hgvsp: ENSP00000339553.4:p.Asp1130Asn
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8857G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3388G>A
  hgvsp: ENSP00000265131.4:p.Asp1130Asn
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7321G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3388G>A
  hgvsp: ENSP00000411406.2:p.Asp1130Asn
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7321G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8857G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8857G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8857G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9968
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1130Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP

9-117827032-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827032
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827032
    reference: chr 9
allele count: 4
allele frequency: 3.294730079238259e-5
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8850G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3381G>A
  hgvsp: ENST00000423613.2:c.3381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3381G>A
  hgvsp: ENST00000341037.4:c.3381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7328G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8850G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3381G>A
  hgvsp: ENST00000350763.4:c.3381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8850G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8850G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.160G>A
  hgvsp: ENST00000544972.1:c.160G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8850G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7328G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7328G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1127Arg
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

9-117827033-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827033
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827033
    reference: chr 9
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3380G>A
  hgvsp: ENSP00000265131.4:p.Arg1127Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.159G>A
  hgvsp: ENSP00000445380.1:p.Arg54Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7329G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8849G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8849G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7329G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7329G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8849G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8849G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3380G>A
  hgvsp: ENSP00000339553.4:p.Arg1127Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8849G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3380G>A
  hgvsp: ENSP00000411406.2:p.Arg1127Gln
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1127Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

9-117827034-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827034
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827034
    reference: chr 9
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8848C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7330C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.158C>T
  hgvsp: ENSP00000445380.1:p.Arg54Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7330C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8848C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8848C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3379C>T
  hgvsp: ENSP00000411406.2:p.Arg1127Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8848C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3379C>T
  hgvsp: ENSP00000265131.4:p.Arg1127Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8848C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3379C>T
  hgvsp: ENSP00000339553.4:p.Arg1127Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7330C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10401
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1127Trp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

9-117827037-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827037
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827037
    reference: chr 9
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7333C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.155C>T
  hgvsp: ENSP00000445380.1:p.Leu53Phe
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8845C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8845C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3376C>T
  hgvsp: ENSP00000411406.2:p.Leu1126Phe
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3376C>T
  hgvsp: ENSP00000339553.4:p.Leu1126Phe
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3376C>T
  hgvsp: ENSP00000265131.4:p.Leu1126Phe
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7333C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7333C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8845C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8845C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8845C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9969
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2304
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1126Phe
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

9-117827038-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827038
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827038
    reference: chr 9
allele count: 279
allele frequency: 2.298074230268685e-3
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3375C>A
  hgvsp: ENSP00000265131.4:p.Ser1125Arg
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8844C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8844C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.154C>A
  hgvsp: ENSP00000445380.1:p.Ser52Arg
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8844C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7334C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7334C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3375C>A
  hgvsp: ENSP00000339553.4:p.Ser1125Arg
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3375C>A
  hgvsp: ENSP00000411406.2:p.Ser1125Arg
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7334C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8844C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8844C>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5426
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7409
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 9.75e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 10397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7397
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ser1125Arg
num of homozygotes: 2
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

9-117827049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827049
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827049
    reference: chr 9
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8833G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3364G>A
  hgvsp: ENSP00000411406.2:p.Val1122Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8833G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3364G>A
  hgvsp: ENSP00000265131.4:p.Val1122Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3364G>A
  hgvsp: ENSP00000339553.4:p.Val1122Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7345G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8833G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.143G>A
  hgvsp: ENSP00000445380.1:p.Val49Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7345G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7345G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8833G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8833G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val1122Met
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

9-117827050-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827050
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827050
    reference: chr 9
allele count: 3
allele frequency: 2.471047559428694e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3363C>T
  hgvsp: ENST00000423613.2:c.3363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7346C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8832C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8832C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3363C>T
  hgvsp: ENST00000350763.4:c.3363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7346C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.142C>T
  hgvsp: ENST00000544972.1:c.142C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8832C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3363C>T
  hgvsp: ENST00000341037.4:c.3363C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8832C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8832C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7346C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1121Thr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

9-117827060-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827060
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827060
    reference: chr 9
allele count: 557
allele frequency: 4.587836056931998e-3
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7356G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8822G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3353G>A
  hgvsp: ENSP00000265131.4:p.Arg1118Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7356G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8822G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8822G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.132G>A
  hgvsp: ENSP00000445380.1:p.Arg45Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3353G>A
  hgvsp: ENSP00000411406.2:p.Arg1118Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8822G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3353G>A
  hgvsp: ENSP00000339553.4:p.Arg1118Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7356G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8822G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10453
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 7.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
hgvs: p.Arg1118Gln
num of homozygotes: 19
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum

9-117827061-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827061
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827061
    reference: chr 9
allele count: 36
allele frequency: 2.965257071314433e-4
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3352C>T
  hgvsp: ENSP00000265131.4:p.Arg1118Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7357C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8821C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3352C>T
  hgvsp: ENSP00000339553.4:p.Arg1118Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3352C>T
  hgvsp: ENSP00000411406.2:p.Arg1118Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8821C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.131C>T
  hgvsp: ENSP00000445380.1:p.Arg45Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7357C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7357C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8821C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8821C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8821C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg1118Trp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

9-117827061-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827061
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827061
    reference: chr 9
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.131C>A
  hgvsp: ENST00000544972.1:c.131C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3352C>A
  hgvsp: ENST00000341037.4:c.3352C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8821C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3352C>A
  hgvsp: ENST00000350763.4:c.3352C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8821C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8821C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7357C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7357C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7357C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3352C>A
  hgvsp: ENST00000423613.2:c.3352C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8821C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8821C>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Arg1118Arg
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/9-117827067-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827067
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827067
    reference: chr 9
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.125G>T
  hgvsp: ENSP00000445380.1:p.Ala43Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8815G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7363G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3346G>T
  hgvsp: ENSP00000411406.2:p.Ala1116Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7363G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8815G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3346G>T
  hgvsp: ENSP00000265131.4:p.Ala1116Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3346G>T
  hgvsp: ENSP00000339553.4:p.Ala1116Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8815G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7363G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8815G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8815G>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1116Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

9-117827067-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827067
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827067
    reference: chr 9
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7363G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7363G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3346G>A
  hgvsp: ENSP00000339553.4:p.Ala1116Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3346G>A
  hgvsp: ENSP00000411406.2:p.Ala1116Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8815G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3346G>A
  hgvsp: ENSP00000265131.4:p.Ala1116Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8815G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8815G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8815G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7363G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8815G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.125G>A
  hgvsp: ENSP00000445380.1:p.Ala43Thr
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1116Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

9-117827069-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827069
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827069
    reference: chr 9
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.123A>G
  hgvsp: ENSP00000445380.1:p.Glu42Gly
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3344A>G
  hgvsp: ENSP00000265131.4:p.Glu1115Gly
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8813A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3344A>G
  hgvsp: ENSP00000339553.4:p.Glu1115Gly
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8813A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7365A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8813A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7365A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3344A>G
  hgvsp: ENSP00000411406.2:p.Glu1115Gly
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7365A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8813A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8813A>G
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10564
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Glu1115Gly
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

9-117827070-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827070
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827070
    reference: chr 9
allele count: 6
allele frequency: 4.941932295527551e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8812G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3343G>A
  hgvsp: ENSP00000265131.4:p.Glu1115Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3343G>A
  hgvsp: ENSP00000411406.2:p.Glu1115Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.122G>A
  hgvsp: ENSP00000445380.1:p.Glu42Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7366G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3343G>A
  hgvsp: ENSP00000339553.4:p.Glu1115Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8812G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7366G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8812G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8812G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8812G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7366G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10166
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu1115Lys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-117827085-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827085
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827085
    reference: chr 9
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8797G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7381G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3328G>A
  hgvsp: ENSP00000411406.2:p.Glu1110Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3328G>A
  hgvsp: ENSP00000339553.4:p.Glu1110Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7381G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.107G>A
  hgvsp: ENSP00000445380.1:p.Glu37Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7381G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8797G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8797G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3328G>A
  hgvsp: ENSP00000265131.4:p.Glu1110Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8797G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8797G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8969
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu1110Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

9-117827087-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827087
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827087
    reference: chr 9
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8795A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8795A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7383A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7383A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8795A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7383A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3326A>G
  hgvsp: ENSP00000339553.4:p.Gln1109Arg
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.105A>G
  hgvsp: ENSP00000445380.1:p.Gln36Arg
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3326A>G
  hgvsp: ENSP00000411406.2:p.Gln1109Arg
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8795A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3326A>G
  hgvsp: ENSP00000265131.4:p.Gln1109Arg
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8795A>G
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln1109Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

9-117827089-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827089
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827089
    reference: chr 9
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3324G>C
  hgvsp: ENST00000423613.2:c.3324G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7385G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3324G>C
  hgvsp: ENST00000341037.4:c.3324G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8793G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8793G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3324G>C
  hgvsp: ENST00000350763.4:c.3324G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8793G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8793G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.103G>C
  hgvsp: ENST00000544972.1:c.103G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7385G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8793G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7385G>C
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val1108Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD

9-117827089-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827089
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827089
    reference: chr 9
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7385G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3324G>A
  hgvsp: ENST00000423613.2:c.3324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8793G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7385G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8793G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.103G>A
  hgvsp: ENST00000544972.1:c.103G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3324G>A
  hgvsp: ENST00000341037.4:c.3324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8793G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3324G>A
  hgvsp: ENST00000350763.4:c.3324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8793G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8793G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7385G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val1108Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

9-117827091-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827091
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827091
    reference: chr 9
allele count: 4
allele frequency: 3.294621530351701e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.101G>A
  hgvsp: ENSP00000445380.1:p.Val35Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3322G>A
  hgvsp: ENSP00000411406.2:p.Val1108Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8791G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3322G>A
  hgvsp: ENSP00000339553.4:p.Val1108Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8791G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7387G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8791G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8791G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7387G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8791G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3322G>A
  hgvsp: ENSP00000265131.4:p.Val1108Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7387G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val1108Met
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

9-117827111-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827111
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827111
    reference: chr 9
allele count: 4
allele frequency: 3.294838635277837e-5
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7407A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.81A>G
  hgvsp: ENSP00000445380.1:p.Tyr28Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8771A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7407A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8771A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8771A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3302A>G
  hgvsp: ENSP00000411406.2:p.Tyr1101Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8771A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8771A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7407A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3302A>G
  hgvsp: ENSP00000339553.4:p.Tyr1101Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3302A>G
  hgvsp: ENSP00000265131.4:p.Tyr1101Cys
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8966
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10569
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr1101Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS

9-117827112-AGGC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827112
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827109
    reference: chr 9
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3298_3300delGCC
  hgvsp: ENSP00000265131.4:p.Ala1100del
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8767_3214+8769delGCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7411_3215-7409delGCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3298_3300delGCC
  hgvsp: ENSP00000411406.2:p.Ala1100del
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7411_3215-7409delGCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7411_3215-7409delGCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3298_3300delGCC
  hgvsp: ENSP00000339553.4:p.Ala1100del
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8767_3214+8769delGCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8767_39+8769delGCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8767_170+8769delGCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.77_79delGCC
  hgvsp: ENSP00000445380.1:p.Ala27del
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8767_3214+8769delGCC
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 10572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7468
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala1100del
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: AGGC
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ

9-117827116-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827116
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827116
    reference: chr 9
allele count: 1
allele frequency: 8.237503706876667e-6
allele num: 121396
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3297G>A
  hgvsp: ENST00000350763.4:c.3297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.76G>A
  hgvsp: ENST00000544972.1:c.76G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8766G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8766G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7412G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7412G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3297G>A
  hgvsp: ENST00000423613.2:c.3297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8766G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3297G>A
  hgvsp: ENST00000341037.4:c.3297G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8766G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7412G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8766G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10165
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7364
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln1099Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

9-117827117-TGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827117
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827115
    reference: chr 9
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8763_3214+8764delCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8763_3214+8764delCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7415_3215-7414delCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8763_39+8764delCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8763_3214+8764delCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3294_3295delCC
  hgvsp: ENSP00000339553.4:p.Asp1098GlufsTer4
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.73_74delCC
  hgvsp: ENSP00000445380.1:p.Asp25GlufsTer4
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7415_3215-7414delCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3294_3295delCC
  hgvsp: ENSP00000411406.2:p.Asp1098GlufsTer4
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3294_3295delCC
  hgvsp: ENSP00000265131.4:p.Asp1098GlufsTer4
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7415_3215-7414delCC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8763_170+8764delCC
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1098GlufsTer4
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: TGG
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

9-117827119-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827119
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827119
    reference: chr 9
allele count: 10
allele frequency: 8.237367996177861e-5
allele num: 121398
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8763C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7415C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7415C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3294C>T
  hgvsp: ENST00000341037.4:c.3294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3294C>T
  hgvsp: ENST00000423613.2:c.3294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3294C>T
  hgvsp: ENST00000350763.4:c.3294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8763C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.73C>T
  hgvsp: ENST00000544972.1:c.73C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8763C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7415C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8763C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8763C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10565
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1098Asp
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

9-117827119-G-GCAAC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827119
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827123
    reference: chr 9
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: GCAAC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7416_3215-7415insGTTG
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7416_3215-7415insGTTG
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3293_3294insGTTG
  hgvsp: ENSP00000411406.2:p.Asp1098GlufsTer6
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.72_73insGTTG
  hgvsp: ENSP00000445380.1:p.Asp25GlufsTer6
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8762_3214+8763insGTTG
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7416_3215-7415insGTTG
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3293_3294insGTTG
  hgvsp: ENSP00000339553.4:p.Asp1098GlufsTer6
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3293_3294insGTTG
  hgvsp: ENSP00000265131.4:p.Asp1098GlufsTer6
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8762_3214+8763insGTTG
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8762_3214+8763insGTTG
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8762_39+8763insGTTG
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8762_170+8763insGTTG
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp1098GlufsTer6
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

9-117827127-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827127
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827127
    reference: chr 9
allele count: 113
allele frequency: 9.308225835680983e-4
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8755G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7423G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3286G>A
  hgvsp: ENSP00000265131.4:p.Ala1096Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8755G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.65G>A
  hgvsp: ENSP00000445380.1:p.Ala23Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3286G>A
  hgvsp: ENSP00000411406.2:p.Ala1096Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3286G>A
  hgvsp: ENSP00000339553.4:p.Ala1096Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8755G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8755G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7423G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7423G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8755G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1505
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10566
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10162
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 7349
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 9.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ala1096Thr
num of homozygotes: 2
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ

9-117827128-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827128
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827128
    reference: chr 9
allele count: 6
allele frequency: 4.94274651948266e-5
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7424C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8754C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8754C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8754C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3285C>T
  hgvsp: ENST00000423613.2:c.3285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3285C>T
  hgvsp: ENST00000350763.4:c.3285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7424C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3285C>T
  hgvsp: ENST00000341037.4:c.3285C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7424C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.64C>T
  hgvsp: ENST00000544972.1:c.64C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8754C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8754C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10195
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8975
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1095Thr
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

9-117827138-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827138
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827138
    reference: chr 9
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7434T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3275T>C
  hgvsp: ENSP00000339553.4:p.Leu1092Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8744T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7434T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8744T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.54T>C
  hgvsp: ENSP00000445380.1:p.Leu19Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3275T>C
  hgvsp: ENSP00000411406.2:p.Leu1092Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7434T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8744T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3275T>C
  hgvsp: ENSP00000265131.4:p.Leu1092Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8744T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8744T>C
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1092Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

9-117827139-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827139
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827139
    reference: chr 9
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7435C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8743C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7435C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3274C>A
  hgvsp: ENSP00000411406.2:p.Leu1092Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8743C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3274C>A
  hgvsp: ENSP00000265131.4:p.Leu1092Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8743C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7435C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.53C>A
  hgvsp: ENSP00000445380.1:p.Leu19Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8743C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3274C>A
  hgvsp: ENSP00000339553.4:p.Leu1092Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8743C>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10584
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1092Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/9-117827156-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827156
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827156
    reference: chr 9
allele count: 1
allele frequency: 8.242664029014178e-6
allele num: 121320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8726G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7452G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8726G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7452G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7452G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3257G>T
  hgvsp: ENSP00000339553.4:p.Gly1086Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8726G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8726G>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.36G>T
  hgvsp: ENSP00000445380.1:p.Gly13Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3257G>T
  hgvsp: ENSP00000411406.2:p.Gly1086Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3257G>T
  hgvsp: ENSP00000265131.4:p.Gly1086Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8726G>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly1086Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

9-117827169-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827169
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827169
    reference: chr 9
allele count: 10
allele frequency: 8.24973600844773e-5
allele num: 121216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7465G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7465G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8713G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3244G>A
  hgvsp: ENSP00000411406.2:p.Val1082Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3244G>A
  hgvsp: ENSP00000339553.4:p.Val1082Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8713G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.23G>A
  hgvsp: ENSP00000445380.1:p.Val9Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7465G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3244G>A
  hgvsp: ENSP00000265131.4:p.Val1082Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8713G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8713G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8713G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val1082Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum

9-117827170-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827170
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827170
    reference: chr 9
allele count: 3
allele frequency: 2.475165836111019e-5
allele num: 121204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3243C>T
  hgvsp: ENST00000423613.2:c.3243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7466C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7466C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3243C>T
  hgvsp: ENST00000350763.4:c.3243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.22C>T
  hgvsp: ENST00000544972.1:c.22C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8712C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8712C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8712C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8712C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3243C>T
  hgvsp: ENST00000341037.4:c.3243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8712C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7466C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10146
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7473
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr1081Thr
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

9-117827175-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827175
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827175
    reference: chr 9
allele count: 1
allele frequency: 8.25695648583932e-6
allele num: 121110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7471C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8707C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8707C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8707C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.17C>T
  hgvsp: ENSP00000445380.1:p.Leu7Phe
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8707C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8707C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7471C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3238C>T
  hgvsp: ENSP00000265131.4:p.Leu1080Phe
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3238C>T
  hgvsp: ENSP00000411406.2:p.Leu1080Phe
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3238C>T
  hgvsp: ENSP00000339553.4:p.Leu1080Phe
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7471C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu1080Phe
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

9-117827190-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827190
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827190
    reference: chr 9
allele count: 1
allele frequency: 8.306613725848521e-6
allele num: 120386
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8692C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3223C>T
  hgvsp: ENSP00000411406.2:p.Pro1075Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8692C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3223C>T
  hgvsp: ENSP00000265131.4:p.Pro1075Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3223C>T
  hgvsp: ENSP00000339553.4:p.Pro1075Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7486C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.2C>T
  hgvsp: ENSP00000445380.1:p.Pro2Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8692C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7486C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7486C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8692C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8692C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro1075Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

9-117827192-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827192
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827192
    reference: chr 9
allele count: 1
allele frequency: 8.316284949187499e-6
allele num: 120246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7488C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3221C>T
  hgvsp: ENSP00000411406.2:p.Ala1074Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3221C>T
  hgvsp: ENSP00000265131.4:p.Ala1074Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8690C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7488C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8690C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3221C>T
  hgvsp: ENSP00000339553.4:p.Ala1074Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8690C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8690C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8690C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7488C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3741
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7465
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala1074Val
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum

9-117827196-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827196
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827196
    reference: chr 9
allele count: 7
allele frequency: 5.835862206956348e-5
allele num: 119948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7492C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7492C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3217C>A
  hgvsp: ENSP00000411406.2:p.Gln1073Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8686C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3217C>A
  hgvsp: ENSP00000339553.4:p.Gln1073Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8686C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8686C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7492C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3217C>A
  hgvsp: ENSP00000265131.4:p.Gln1073Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8686C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8686C>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8959
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9760
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10478
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7463
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln1073Lys
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD

9-117827199-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827199
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827199
    reference: chr 9
allele count: 1
allele frequency: 8.35952651641811e-6
allele num: 119624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3215-1G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8683G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8683G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7495G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3215-1G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8683G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3215-1G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8683G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8683G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7495G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7495G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8956
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18675
  bin: 9.75e1
  variant carriers: 1
hgvs: c.3215-1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

9-117827206-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827206
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827206
    reference: chr 9
allele count: 1
allele frequency: 8.432556413802408e-6
allele num: 118588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8676T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8676T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3215-8T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7502T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3215-8T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8676T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7502T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7502T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8676T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3215-8T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8676T>C
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7461
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8956
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: c.3215-8T>C
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-117827210-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827210
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827210
    reference: chr 9
allele count: 3
allele frequency: 2.536525974025974e-5
allele num: 118272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8672G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3215-12G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8672G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8672G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7506G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3215-12G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8672G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3215-12G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7506G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8672G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7506G>C
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

9-117827213-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827213
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827213
    reference: chr 9
allele count: 1
allele frequency: 8.484930762964974e-6
allele num: 117856
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7509T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7509T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3215-15T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8669T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8669T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8669T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3215-15T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8669T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8669T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3215-15T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7509T>C
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5458
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8948
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3901
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: A
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

9-117827220-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827220
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827220
    reference: chr 9
allele count: 3
allele frequency: 2.558068146935434e-5
allele num: 117276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3215-22C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8662C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8662C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3215-22C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7516C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8662C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8662C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3215-22C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7516C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8662C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7516C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3739
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP

9-117827222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827222
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827222
    reference: chr 9
allele count: 4
allele frequency: 3.419563321763811e-5
allele num: 116974
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3215-24G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3215-24G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8660G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8660G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3215-24G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8660G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7518G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8660G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7518G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7518G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8660G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10201
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8939
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8478
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5454
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

9-117827225-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827225
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827225
    reference: chr 9
allele count: 4
allele frequency: 3.425772083383293e-5
allele num: 116762
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7521A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8657A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3215-27A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3215-27A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8657A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3215-27A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8657A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8657A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7521A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8657A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7521A>G
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8931
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

9-117827232-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827232
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827232
    reference: chr 9
allele count: 2
allele frequency: 1.726280900428118e-5
allele num: 115856
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3215-34T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7528T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8650T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3215-34T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8650T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8650T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8650T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3215-34T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8650T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7528T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7528T>C
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum

9-117827232-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827232
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827231
    reference: chr 9
allele count: 1
allele frequency: 8.631404502140589e-6
allele num: 115856
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3215-35delA
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8649delA
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3215-35delA
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3215-35delA
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8649delA
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7529delA
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8649delA
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7529delA
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8649delA
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8649delA
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7529delA
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5452
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7452
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9923
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4377
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: AT
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

9-117827238-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117827238
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117827238
    reference: chr 9
allele count: 1
allele frequency: 8.695198511382016e-6
allele num: 115006
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.3214+8644G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.3214+8644G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.3214+8644G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.3215-7534G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.3215-40G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.3215-40G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000473855
  gene symbol: TNC
  hgvsc: ENST00000473855.1:n.170+8644G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl transcript: ENST00000498724
  gene symbol: TNC
  hgvsc: ENST00000498724.1:n.39+8644G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.3215-7534G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.3215-7534G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.3215-40G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 839
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2954
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2992
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.662e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.386e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.270000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 1.545e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

DP
type: SiteQuality
SIO_000300: 2.01428e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.538071065989848e-4
allele num: 3940
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.15e-1

FS
type: SiteQuality
SIO_000300: 2.688e0

QD
type: SiteQuality
SIO_000300: 1.381e1

VQSLOD
type: SiteQuality
SIO_000300: -8.348e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.72e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 5.587e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

DP
type: SiteQuality
SIO_000300: 2.43053e5

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4020
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 432
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.427e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.67e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.368e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.4824e5

QD
type: SiteQuality
SIO_000300: 8.24e0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4426
num of homozygotes: 0

South Asian
type: Population
allele count: 40
allele frequency: 1.160092807424594e-2
allele num: 3448
num of homozygotes: 2

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.34e-2

QD
type: SiteQuality
SIO_000300: 1.27e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 2.451e0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.32e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 2.70836e5

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.798561151079137e-3
allele num: 556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5432
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.00734e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.91e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.88e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531393568147014e-4
allele num: 6530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 4.384e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.55e-2

DP
type: SiteQuality
SIO_000300: 3.37885e5

VQSLOD
type: SiteQuality
SIO_000300: -2.093e0

QD
type: SiteQuality
SIO_000300: 4.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 746
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.98e0

DP
type: SiteQuality
SIO_000300: 3.56725e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.07e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7716
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.03e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.83e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.29e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.64636e5

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4266
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8156
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.971e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.77e-2

DP
type: SiteQuality
SIO_000300: 3.73335e5

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.818e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.57e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.89954e5

QD
type: SiteQuality
SIO_000300: 8.74e0

VQSLOD
type: SiteQuality
SIO_000300: 4.4e-1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1054
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1086
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 1.474926253687316e-3
allele num: 4746
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.75e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.408e0

FS
type: SiteQuality
SIO_000300: 4.899e0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

DP
type: SiteQuality
SIO_000300: 4.27105e5

QD
type: SiteQuality
SIO_000300: 1.021e1

VQSLOD
type: SiteQuality
SIO_000300: 5.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

MQ
type: SiteQuality
SIO_000300: 5.942e1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1086
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.107037505267594e-4
allele num: 4746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1012
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1054
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.899e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.75e-2

MQ
type: SiteQuality
SIO_000300: 5.942e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.408e0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

QD
type: SiteQuality
SIO_000300: 1.021e1

DP
type: SiteQuality
SIO_000300: 4.27105e5

South Asian
type: Population
allele count: 5952
allele frequency: 6.895273401297498e-1
allele num: 8632
num of homozygotes: 1914

African
type: Population
allele count: 1081
allele frequency: 4.88256549232159e-1
allele num: 2214
num of homozygotes: 190

European (Finnish)
type: Population
allele count: 2304
allele frequency: 8.02787456445993e-1
allele num: 2870
num of homozygotes: 887

Other
type: Population
allele count: 313
allele frequency: 7.747524752475248e-1
allele num: 404
num of homozygotes: 114

East Asian
type: Population
allele count: 855
allele frequency: 3.929227941176471e-1
allele num: 2176
num of homozygotes: 97

European (Non-Finnish)
type: Population
allele count: 25975
allele frequency: 8.430704316780266e-1
allele num: 30810
num of homozygotes: 10686

FS
type: SiteQuality
SIO_000300: 9.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.19e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 5.85086e5

QD
type: SiteQuality
SIO_000300: 2.678e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.735e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.345e-1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7970
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32418
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.866976024748647e-4
allele num: 5172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.517e0

VQSLOD
type: SiteQuality
SIO_000300: 6.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.813e0

QD
type: SiteQuality
SIO_000300: 1.758e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.56e-2

DP
type: SiteQuality
SIO_000300: 6.00304e5

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2588
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 3.178639542275906e-4
allele num: 3146
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7862
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.067484662576687e-5
allele num: 32600
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.62e-1

ReadPosRankSum
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SIO_000300: 1.39e0

InbreedingCoeff
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SIO_000300: -1.65e-2

MQ
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SIO_000300: 6.0e1

VQSLOD
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SIO_000300: 6.74e-1

BaseQRankSum
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SIO_000300: -1.03e0

DP
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SIO_000300: 6.14166e5

FS
type: SiteQuality
SIO_000300: 3.153e0

MQRankSum
type: SiteQuality
SIO_000300: 8.88e-1

QD
type: SiteQuality
SIO_000300: 1.189e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

QD
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SIO_000300: 1.522e1

MQRankSum
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SIO_000300: 3.69e-1

VQSLOD
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SIO_000300: 1.82e0

ReadPosRankSum
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DP
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ClippingRankSum
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SIO_000300: -2.78e-1

InbreedingCoeff
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SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 4.082e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
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SIO_000300: -1.205e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

BaseQRankSum
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SIO_000300: -1.205e0

InbreedingCoeff
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SIO_000300: 1.0e-4

FS
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SIO_000300: 4.082e0

MQRankSum
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SIO_000300: 3.69e-1

ClippingRankSum
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SIO_000300: -2.78e-1

MQ
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SIO_000300: 5.975e1

QD
type: SiteQuality
SIO_000300: 1.522e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.83e-1

DP
type: SiteQuality
SIO_000300: 2.425444e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-1

DP
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SIO_000300: 2.425397e6

BaseQRankSum
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SIO_000300: 4.02e0

ClippingRankSum
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SIO_000300: -1.275e0

MQRankSum
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SIO_000300: -2.22e-1

MQ
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SIO_000300: 5.992e1

FS
type: SiteQuality
SIO_000300: 1.129e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.437e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.09e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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FS
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ClippingRankSum
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MQ
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VQSLOD
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BaseQRankSum
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66736
num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

Other
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num of homozygotes: 0

FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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DP
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MQ
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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num of homozygotes: 0

European (Non-Finnish)
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num of homozygotes: 0

Other
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East Asian
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African
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South Asian
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European (Finnish)
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ReadPosRankSum
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MQ
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ClippingRankSum
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FS
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MQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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Latino
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allele frequency: 0.0e0
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African
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South Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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SIO_000300: 5.984e1

MQRankSum
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ReadPosRankSum
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SIO_000300: 7.39e-1

ClippingRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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FS
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SIO_000300: 8.0e-1

DP
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SIO_000300: 2.424742e6

VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele num: 8652
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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South Asian
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Other
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ClippingRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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MQ
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MQRankSum
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SIO_000300: 1.16e0

DP
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SIO_000300: 2.424682e6

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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South Asian
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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VQSLOD
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SIO_000300: 1.12e0

MQ
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FS
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DP
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: 3.05e-1

ReadPosRankSum
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SIO_000300: 7.14e-1

QD
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SIO_000300: 1.254e1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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num of homozygotes: 0

South Asian
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Latino
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allele num: 11578
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Other
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European (Non-Finnish)
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allele num: 66734
num of homozygotes: 0

East Asian
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MQRankSum
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SIO_000300: 2.81e-1

QD
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ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQ
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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Other
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African
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European (Finnish)
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South Asian
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Latino
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DP
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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QD
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FS
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

Other
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Latino
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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DP
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InbreedingCoeff
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MQ
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MQRankSum
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FS
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Latino
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South Asian
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Other
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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DP
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FS
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Non-Finnish)
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South Asian
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Latino
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East Asian
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allele num: 8652
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
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SIO_000300: -7.27e-1

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: -2.42e-1

FS
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VQSLOD
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DP
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SIO_000300: 2.40166e6

BaseQRankSum
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SIO_000300: 1.83e0

QD
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SIO_000300: 1.348e1

MQ
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SIO_000300: 6.0e1

ClippingRankSum
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SIO_000300: -1.347e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.996883241428914e-5
allele num: 66736
num of homozygotes: 0

Other
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allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

BaseQRankSum
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SIO_000300: 1.19e0

QD
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SIO_000300: 1.295e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
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SIO_000300: -1.142e0

MQRankSum
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SIO_000300: 7.45e-1

FS
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SIO_000300: 5.22e-1

MQ
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SIO_000300: 5.963e1

ReadPosRankSum
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SIO_000300: 9.12e-1

DP
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SIO_000300: 2.401704e6

GenotypeDepth
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variant carriers: 10

GenotypeDepth
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variant carriers: 435

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 19175
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variant carriers: 538

African
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allele count: 525
allele frequency: 5.045166250240246e-2
allele num: 10406
num of homozygotes: 19

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.993586862057598e-5
allele num: 66738
num of homozygotes: 0

Other
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allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 24
allele frequency: 2.072896873380549e-3
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
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SIO_000300: 0.0e0

QD
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SIO_000300: 1.509e1

ReadPosRankSum
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SIO_000300: 9.24e-1

MQRankSum
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SIO_000300: 3.07e-1

DP
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SIO_000300: 2.409862e6

VQSLOD
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SIO_000300: 5.64e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
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SIO_000300: 6.04e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

GenotypeDepth
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variant carriers: 26

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 36

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 13
allele frequency: 1.947974106928794e-4
allele num: 66736
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 19
allele frequency: 1.150678294573644e-3
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.241e0

MQ
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SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.368e1

ClippingRankSum
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SIO_000300: -1.43e-1

MQRankSum
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SIO_000300: 1.34e-1

ReadPosRankSum
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SIO_000300: 5.13e-1

FS
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SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 5.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
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SIO_000300: 2.358458e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

Latino
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allele num: 11578
num of homozygotes: 0

African
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allele count: 1
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allele num: 10406
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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BaseQRankSum
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SIO_000300: -2.241e0

MQ
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VQSLOD
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ReadPosRankSum
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FS
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MQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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European (Finnish)
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66740
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Latino
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ReadPosRankSum
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SIO_000300: 8.149999999999999e-1

InbreedingCoeff
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QD
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MQRankSum
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BaseQRankSum
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FS
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ClippingRankSum
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DP
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VQSLOD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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South Asian
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European (Non-Finnish)
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Latino
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Other
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QD
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DP
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InbreedingCoeff
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MQRankSum
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.354865e6

BaseQRankSum
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SIO_000300: 4.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
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SIO_000300: 1.364e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.88e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.65e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 6

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 8.990110878034162e-5
allele num: 66740
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

BaseQRankSum
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DP
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SIO_000300: 2.354763e6

FS
type: SiteQuality
SIO_000300: 5.84e-1

VQSLOD
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QD
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MQ
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SIO_000300: 5.964e1

ClippingRankSum
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SIO_000300: -1.061e0

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.354048e6

MQ
type: SiteQuality
SIO_000300: 5.912e1

InbreedingCoeff
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SIO_000300: 5.999999999999999e-4

FS
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SIO_000300: 0.0e0

ClippingRankSum
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SIO_000300: -3.8e-1

BaseQRankSum
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SIO_000300: -4.056e0

MQRankSum
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SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: 5.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.72e-1

QD
type: SiteQuality
SIO_000300: 1.054e1

GenotypeDepth
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bin: 6.25e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.323e0

FS
type: SiteQuality
SIO_000300: 3.331e0

ClippingRankSum
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SIO_000300: 5.1e-1

QD
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MQRankSum
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SIO_000300: -1.918e0

InbreedingCoeff
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SIO_000300: 1.1e-3

MQ
type: SiteQuality
SIO_000300: 5.984e1

BaseQRankSum
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SIO_000300: -3.588e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.429e0

DP
type: SiteQuality
SIO_000300: 2.353972e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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VQSLOD
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MQ
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BaseQRankSum
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FS
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
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African
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num of homozygotes: 0

European (Non-Finnish)
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VQSLOD
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DP
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

African
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allele count: 4
allele frequency: 3.843936190659235e-4
allele num: 10406
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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ReadPosRankSum
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InbreedingCoeff
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QD
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FS
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VQSLOD
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ClippingRankSum
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MQ
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BaseQRankSum
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66740
num of homozygotes: 0

Latino
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allele frequency: 3.454828122300915e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
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African
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East Asian
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Other
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South Asian
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allele frequency: 0.0e0
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QD
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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DP
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SIO_000300: 2.353179e6

ReadPosRankSum
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SIO_000300: 5.590000000000001e-1

MQ
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SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.289e0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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European (Non-Finnish)
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African
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Latino
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FS
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQRankSum
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QD
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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South Asian
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African
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European (Finnish)
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num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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ReadPosRankSum
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BaseQRankSum
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QD
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MQ
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MQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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ClippingRankSum
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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East Asian
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African
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South Asian
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FS
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SIO_000300: 1.1938e1

VQSLOD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
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allele num: 10406
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East Asian
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South Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
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QD
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MQ
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VQSLOD
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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African
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Other
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European (Finnish)
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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DP
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QD
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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Latino
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South Asian
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East Asian
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African
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European (Finnish)
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allele num: 6614
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FS
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Other
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East Asian
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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allele num: 66726
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MQRankSum
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DP
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FS
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ReadPosRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: 4.53e-1

VQSLOD
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MQ
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ClippingRankSum
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SIO_000300: -1.2e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
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allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

Latino
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South Asian
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
type: SiteQuality
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FS
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ReadPosRankSum
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QD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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allele frequency: 0.0e0
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South Asian
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DP
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VQSLOD
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

Other
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DP
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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FS
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MQRankSum
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QD
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 10

East Asian
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allele count: 2
allele frequency: 2.312673450508788e-4
allele num: 8648
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 7.506605813115542e-5
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num of homozygotes: 0

African
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South Asian
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allele num: 16468
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Other
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num of homozygotes: 0

Latino
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FS
type: SiteQuality
SIO_000300: 5.45e-1

BaseQRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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QD
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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European (Non-Finnish)
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allele num: 66594
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African
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East Asian
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Latino
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allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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FS
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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African
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East Asian
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European (Finnish)
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South Asian
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DP
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QD
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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Latino
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European (Non-Finnish)
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African
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Other
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South Asian
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East Asian
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MQ
type: SiteQuality
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VQSLOD
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FS
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

QD
type: SiteQuality
SIO_000300: 1.122e1

DP
type: SiteQuality
SIO_000300: 2.329882e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.665571235260003e-5
allele num: 10346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

QD
type: SiteQuality
SIO_000300: 1.145e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

FS
type: SiteQuality
SIO_000300: 6.8e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.327149e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.111e0

GenotypeQuality
all individuals: 161
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.047777441790142e-5
allele num: 66140
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733402669440111e-4
allele num: 11538
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.203e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.101e1

MQ
type: SiteQuality
SIO_000300: 5.963e1

FS
type: SiteQuality
SIO_000300: 1.206e0

DP
type: SiteQuality
SIO_000300: 2.321864e6

VQSLOD
type: SiteQuality
SIO_000300: 2.84e0

GenotypeQuality
all individuals: 70
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66028
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.697439875872769e-5
allele num: 10312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15660
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 1.515e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 2.316616e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.459e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15048
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521421616358325e-5
allele num: 65728
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.986e1

FS
type: SiteQuality
SIO_000300: 8.377000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 2.8e-2

DP
type: SiteQuality
SIO_000300: 2.294948e6

QD
type: SiteQuality
SIO_000300: 1.535e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.571358912626093e-5
allele num: 65626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.72e-1

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.32e0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.18e-1

MQ
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SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.82e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526251526251526e-5
allele num: 65520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.277564e6

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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QD
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
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SIO_000300: -2.78e-1

BaseQRankSum
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SIO_000300: 2.24e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65322
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.945797329143755e-4
allele num: 10184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.851e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
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VQSLOD
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MQRankSum
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ReadPosRankSum
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FS
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QD
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4410
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532895947023116e-5
allele num: 65236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10168
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.123442808607022e-4
allele num: 14128
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.423e0

QD
type: SiteQuality
SIO_000300: 8.890000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.260685e6

FS
type: SiteQuality
SIO_000300: 2.814e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3896
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2572
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4195
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4403
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12005
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5190
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18667
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 984
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4391
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.851846570654499e-4
allele num: 14026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.253649e6

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.23e0

QD
type: SiteQuality
SIO_000300: 1.664e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.952e1

GenotypeQuality
all individuals: 241
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5060
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4031
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18663
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3895
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4377
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.744591765526867e-4
allele num: 11464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13486
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

QD
type: SiteQuality
SIO_000300: 1.437e1

FS
type: SiteQuality
SIO_000300: 5.795e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 2.237225e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

GenotypeQuality
all individuals: 5060
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 953
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4031
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2549
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3895
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18663
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.541069502234551e-5
allele num: 64890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 2.237225e6

QD
type: SiteQuality
SIO_000300: 1.437e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.969e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

FS
type: SiteQuality
SIO_000300: 5.795e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.18e-1

GenotypeQuality
all individuals: 180
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 977
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4353
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2100
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4878
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3766
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4355
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18642
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3886
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9995
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10052
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64628
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.69941484447182e-5
allele num: 12988
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: -3.281e0