9-134477468-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477468
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477468
    reference: chr 9
allele count: 1
allele frequency: 1.909854851031322e-5
allele num: 52360
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1977C>T
  hgvsp: ENST00000372190.3:c.1977C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1923C>T
  hgvsp: ENST00000372189.3:c.1923C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.205C>T
  hgvsp: ENST00000414781.1:c.205C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1974C>T
  hgvsp: ENST00000372195.1:c.1974C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31531
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16415
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2479
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32760
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp659Asp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD

9-134477482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477482
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477482
    reference: chr 9
allele count: 7
allele frequency: 1.315393866506314e-4
allele num: 53216
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1963G>A
  hgvsp: ENSP00000361264.3:p.Val655Ile
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1960G>A
  hgvsp: ENSP00000361269.1:p.Val654Ile
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.191G>A
  hgvsp: ENSP00000407210.1:p.Val65Ile
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1909G>A
  hgvsp: ENSP00000361263.2:p.Val637Ile
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5859
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14453
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30885
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
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genotype quality: GenotypeQuality
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  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 801
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14779
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
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genotype quality: GenotypeQuality
  all individuals: 2711
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33048
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val655Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

9-134477483-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477483
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477483
    reference: chr 9
allele count: 2
allele frequency: 3.75206363499925e-5
allele num: 53304
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1959C>T
  hgvsp: ENST00000372195.1:c.1959C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.190C>T
  hgvsp: ENST00000414781.1:c.190C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1908C>T
  hgvsp: ENST00000372189.3:c.1908C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1962C>T
  hgvsp: ENST00000372190.3:c.1962C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5909
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 202
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genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly654Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-134477485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477485
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477485
    reference: chr 9
allele count: 1
allele frequency: 1.882317509317472e-5
allele num: 53126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.188G>A
  hgvsp: ENSP00000407210.1:p.Gly64Ser
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1960G>A
  hgvsp: ENSP00000361264.3:p.Gly654Ser
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1906G>A
  hgvsp: ENSP00000361263.2:p.Gly636Ser
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1957G>A
  hgvsp: ENSP00000361269.1:p.Gly653Ser
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 3.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly654Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

9-134477486-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477486
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477486
    reference: chr 9
allele count: 28
allele frequency: 5.290805336155097e-4
allele num: 52922
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1959C>T
  hgvsp: ENST00000372190.3:c.1959C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1956C>T
  hgvsp: ENST00000372195.1:c.1956C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1905C>T
  hgvsp: ENST00000372189.3:c.1905C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.187C>T
  hgvsp: ENST00000414781.1:c.187C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13832
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6497
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2960
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32819
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser653Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-134477489-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477489
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477489
    reference: chr 9
allele count: 1
allele frequency: 1.876665540667342e-5
allele num: 53286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.184C>G
  hgvsp: ENST00000414781.1:c.184C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1953C>G
  hgvsp: ENST00000372195.1:c.1953C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1956C>G
  hgvsp: ENST00000372190.3:c.1956C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1902C>G
  hgvsp: ENST00000372189.3:c.1902C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13399
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 498
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33701
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3007
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val652Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff

9-134477492-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477492
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477492
    reference: chr 9
allele count: 3
allele frequency: 5.658242172764994e-5
allele num: 53020
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1953G>A
  hgvsp: ENST00000372190.3:c.1953G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.181G>A
  hgvsp: ENST00000414781.1:c.181G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1899G>A
  hgvsp: ENST00000372189.3:c.1899G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1950G>A
  hgvsp: ENST00000372195.1:c.1950G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12906
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30487
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34026
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala651Ala
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-134477493-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477493
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477493
    reference: chr 9
allele count: 19
allele frequency: 3.604902667627974e-4
allele num: 52706
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.180C>T
  hgvsp: ENSP00000407210.1:p.Ala61Val
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1949C>T
  hgvsp: ENSP00000361269.1:p.Ala650Val
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1952C>T
  hgvsp: ENSP00000361264.3:p.Ala651Val
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1898C>T
  hgvsp: ENSP00000361263.2:p.Ala633Val
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30425
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12586
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3319
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1059
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ala651Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

9-134477501-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477501
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477501
    reference: chr 9
allele count: 3
allele frequency: 5.937772147890112e-5
allele num: 50524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1890T>A
  hgvsp: ENSP00000361263.2:p.Asp630Glu
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.683T>A
  hgvsp: ENSP00000394296.1:p.Asp228Glu
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1944T>A
  hgvsp: ENSP00000361264.3:p.Asp648Glu
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.172T>A
  hgvsp: ENSP00000407210.1:p.Asp58Glu
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1941T>A
  hgvsp: ENSP00000361269.1:p.Asp647Glu
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4396
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11333
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 726
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp648Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum

9-134477503-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477503
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477503
    reference: chr 9
allele count: 2
allele frequency: 3.978832610512076e-5
allele num: 50266
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.170G>A
  hgvsp: ENSP00000407210.1:p.Asp58Asn
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1942G>A
  hgvsp: ENSP00000361264.3:p.Asp648Asn
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.681G>A
  hgvsp: ENSP00000394296.1:p.Asp228Asn
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1888G>A
  hgvsp: ENSP00000361263.2:p.Asp630Asn
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1939G>A
  hgvsp: ENSP00000361269.1:p.Asp647Asn
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3229
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 133
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1095
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1331
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 359
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genotype quality: GenotypeQuality
  all individuals: 728
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 34955
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genotype quality: GenotypeQuality
  all individuals: 4568
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genotype quality: GenotypeQuality
  all individuals: 409
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genotype quality: GenotypeQuality
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp648Asn
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

9-134477515-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477515
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477515
    reference: chr 9
allele count: 1
allele frequency: 2.150630134629447e-5
allele num: 46498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.669G>A
  hgvsp: ENSP00000394296.1:p.Gly224Arg
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1927G>A
  hgvsp: ENSP00000361269.1:p.Gly643Arg
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1930G>A
  hgvsp: ENSP00000361264.3:p.Gly644Arg
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.158G>A
  hgvsp: ENSP00000407210.1:p.Gly54Arg
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1876G>A
  hgvsp: ENSP00000361263.2:p.Gly626Arg
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9798
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7865
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6633
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
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genotype quality: GenotypeQuality
  all individuals: 350
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genotype quality: GenotypeQuality
  all individuals: 1322
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9172
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genotype quality: GenotypeQuality
  all individuals: 34203
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1068
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genotype quality: GenotypeQuality
  all individuals: 200
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genotype quality: GenotypeQuality
  all individuals: 7062
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly644Arg
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

9-134477516-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477516
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477516
    reference: chr 9
allele count: 3
allele frequency: 6.568575932737782e-5
allele num: 45672
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1926C>T
  hgvsp: ENST00000372195.1:c.1926C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1929C>T
  hgvsp: ENST00000372190.3:c.1929C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.157C>T
  hgvsp: ENST00000414781.1:c.157C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1875C>T
  hgvsp: ENST00000372189.3:c.1875C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.668C>T
  hgvsp: ENST00000419442.1:c.668C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
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  variant carriers: 1
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 9971
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29558
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7657
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33484
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 995
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asp643Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

9-134477518-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477518
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477518
    reference: chr 9
allele count: 2
allele frequency: 4.460502252553638e-5
allele num: 44838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.155G>A
  hgvsp: ENSP00000407210.1:p.Asp53Asn
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.666G>A
  hgvsp: ENSP00000394296.1:p.Asp223Asn
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1873G>A
  hgvsp: ENSP00000361263.2:p.Asp625Asn
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1924G>A
  hgvsp: ENSP00000361269.1:p.Asp642Asn
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1927G>A
  hgvsp: ENSP00000361264.3:p.Asp643Asn
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7098
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9977
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2534
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32882
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8393
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 965
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8242
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp643Asn
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD

9-134477528-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477528
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477528
    reference: chr 9
allele count: 2
allele frequency: 4.815100154083205e-5
allele num: 41536
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1863G>A
  hgvsp: ENST00000372189.3:c.1863G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.656G>A
  hgvsp: ENST00000419442.1:c.656G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1914G>A
  hgvsp: ENST00000372195.1:c.1914G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.145G>A
  hgvsp: ENST00000414781.1:c.145G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1917G>A
  hgvsp: ENST00000372190.3:c.1917G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9621
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6122
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7567
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32001
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11632
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1120
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro639Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

9-134477529-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477529
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477529
    reference: chr 9
allele count: 3
allele frequency: 7.593398805305255e-5
allele num: 39508
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1862C>T
  hgvsp: ENSP00000361263.2:p.Pro621Leu
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.655C>T
  hgvsp: ENSP00000394296.1:p.Pro219Leu
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1916C>T
  hgvsp: ENSP00000361264.3:p.Pro639Leu
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1913C>T
  hgvsp: ENSP00000361269.1:p.Pro638Leu
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.144C>T
  hgvsp: ENSP00000407210.1:p.Pro49Leu
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26957
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2541
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9304
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12608
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29788
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13085
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1284
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro639Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

9-134477530-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477530
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477530
    reference: chr 9
allele count: 1
allele frequency: 2.517623363544814e-5
allele num: 39720
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.654C>T
  hgvsp: ENSP00000394296.1:p.Pro219Ser
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.143C>T
  hgvsp: ENSP00000407210.1:p.Pro49Ser
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1861C>T
  hgvsp: ENSP00000361263.2:p.Pro621Ser
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1915C>T
  hgvsp: ENSP00000361264.3:p.Pro639Ser
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1912C>T
  hgvsp: ENSP00000361269.1:p.Pro638Ser
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27094
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12680
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 880
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro639Ser
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-134477546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477546
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477546
    reference: chr 9
allele count: 1
allele frequency: 2.966830831305999e-5
allele num: 33706
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-10C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.648-10C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.137-10C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-10C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-10C>T
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4770
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2155
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22990
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20699
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

9-134477550-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477550
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477551
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 32328
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-15dupC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-15dupC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-15dupC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.137-15dupC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.648-15dupC
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21408
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4451
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7082
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5551
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20908
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22551
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum

9-134477564-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477564
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477564
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 26312
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-28A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.648-28A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-28A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.137-28A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-28A>G
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26005
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18367
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11827
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3976
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28064
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4207
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

9-134477568-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477568
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477568
    reference: chr 9
allele count: 3
allele frequency: 1.219413055849118e-4
allele num: 24602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.137-32G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-32G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-32G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-32G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.648-32G>A
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18204
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3053
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3994
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1730
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2941
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28205
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 882
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3160
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD

9-134477579-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134477579
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134477579
    reference: chr 9
allele count: 7569
allele frequency: 3.331719341491328e-1
allele num: 22718
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-43A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.648-43A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.137-43A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-43A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-43A>G
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 5.75e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 22476
  bin: 2.5e0
  variant carriers: 2826
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 6.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 3198
  bin: 1.25e1
  variant carriers: 1739
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.75e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 1.75e1
  variant carriers: 1149
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 2.25e1
  variant carriers: 1024
genotype depth: GenotypeDepth
  all individuals: 18600
  bin: 7.5e0
  variant carriers: 7965
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 3.25e1
  variant carriers: 391
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 2.75e1
  variant carriers: 666
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 6.25e1
  variant carriers: 95
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 5.25e1
  variant carriers: 484
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 3.25e1
  variant carriers: 296
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 7.25e1
  variant carriers: 228
genotype quality: GenotypeQuality
  all individuals: 3960
  bin: 1.25e1
  variant carriers: 1097
genotype quality: GenotypeQuality
  all individuals: 3525
  bin: 1.75e1
  variant carriers: 1736
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 4.25e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 15151
  bin: 7.5e0
  variant carriers: 1103
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 6.75e1
  variant carriers: 256
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 3.75e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 5.75e1
  variant carriers: 729
genotype quality: GenotypeQuality
  all individuals: 3535
  bin: 2.25e1
  variant carriers: 1326
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 9.25e1
  variant carriers: 518
genotype quality: GenotypeQuality
  all individuals: 10345
  bin: 2.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 7.75e1
  variant carriers: 395
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 8.75e1
  variant carriers: 680
num of homozygotes: 1325
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

9-134479300-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479300
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479300
    reference: chr 9
allele count: 2
allele frequency: 1.431229426077e-4
allele num: 13974
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.136+48C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1764C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1764C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+1018C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1764C>T
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12491
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6219
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24251
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5849
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 990
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

9-134479311-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479311
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479311
    reference: chr 9
allele count: 2
allele frequency: 1.42511044605957e-4
allele num: 14034
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1775G>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1775G>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1775G>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.136+37G>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+1007G>C
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13081
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34173
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5622
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3386
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

9-134479316-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479316
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479316
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 14350
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.136+32G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1780G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+1002G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1780G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1780G>A
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14112
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33328
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2799
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9559
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5019
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2901
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

9-134479331-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479331
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479331
    reference: chr 9
allele count: 1
allele frequency: 6.409434687860531e-5
allele num: 15602
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+987G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1795G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.136+17G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1795G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1795G>A
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28875
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19007
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3519
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3284
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15234
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25805
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2277
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

9-134479332-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479332
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479332
    reference: chr 9
allele count: 1
allele frequency: 6.322711178553364e-5
allele num: 15816
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+986C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1796C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.136+16C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1796C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1796C>T
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27984
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16481
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
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genotype quality: GenotypeQuality
  all individuals: 25258
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 850
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

9-134479371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479371
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479371
    reference: chr 9
allele count: 3
allele frequency: 1.221001221001221e-4
allele num: 24570
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1835G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.113G>A
  hgvsp: ENSP00000407210.1:p.Glu39Lys
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1835G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1835G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+947G>A
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2394
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 33105
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11977
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 58
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31289
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 154
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
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genotype quality: GenotypeQuality
  all individuals: 1899
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genotype quality: GenotypeQuality
  all individuals: 621
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 236
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genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu39Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

9-134479382-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479382
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479382
    reference: chr 9
allele count: 1
allele frequency: 3.607503607503608e-5
allele num: 27720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1846G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1846G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1846G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.102G>A
  hgvsp: ENSP00000407210.1:p.Gly35Asp
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+936G>A
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9701
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9455
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1498
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 823
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Gly35Asp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-134479387-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479387
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479387
    reference: chr 9
allele count: 2
allele frequency: 6.918978758735211e-5
allele num: 28906
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1851C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.97C>T
  hgvsp: ENST00000414781.1:c.97C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+931C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1851C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1851C>T
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2096
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9022
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33528
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser33Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

9-134479403-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479403
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479403
    reference: chr 9
allele count: 2
allele frequency: 6.652917304237908e-5
allele num: 30062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.81A>G
  hgvsp: ENSP00000407210.1:p.Tyr28Cys
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1867A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1867A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+915A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1867A>G
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9537
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33031
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9433
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr28Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

9-134479407-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479407
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479407
    reference: chr 9
allele count: 5
allele frequency: 1.681802892700975e-4
allele num: 29730
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1871G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+911G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1871G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1871G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.77G>A
  hgvsp: ENSP00000407210.1:p.Glu27Lys
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32366
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10126
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 10081
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8384
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
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genotype quality: GenotypeQuality
  all individuals: 31792
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu27Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/9-134479415-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479415
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479415
    reference: chr 9
allele count: 2
allele frequency: 6.717721348918447e-5
allele num: 29772
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.69G>T
  hgvsp: ENSP00000407210.1:p.Gly24Val
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1879G>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1879G>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1879G>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+903G>T
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11418
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11371
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly24Val
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

9-134479431-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479431
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479431
    reference: chr 9
allele count: 1
allele frequency: 3.606202668589975e-5
allele num: 27730
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1895G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1895G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1895G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+887G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.53G>A
  hgvsp: ENSP00000407210.1:p.Ala19Thr
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5677
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16176
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16329
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26763
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala19Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-134479448-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479448
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479448
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 23434
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1912T>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1912T>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-8T>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1912T>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+870T>C
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25271
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18680
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4948
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4789
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25230
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16144
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1456
  bin: 2.5e0
  variant carriers: 0
hgvs: c.44-8T>C
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

9-134479454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479454
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479454
    reference: chr 9
allele count: 1
allele frequency: 4.435376563470239e-5
allele num: 22546
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1918C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-14C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1918C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1918C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+864C>T
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17604
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1442
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 53
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4627
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15444
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26720
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2051
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

9-134479456-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479456
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479456
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 21820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+862G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-16G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1920G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1920G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1920G>A
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4449
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16975
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14360
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27288
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2427
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

9-134479457-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479457
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479457
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 21238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-17C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+861C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1921C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1921C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1921C>T
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 28056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16499
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27842
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2540
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4154
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1832
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13442
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

9-134479486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479486
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479486
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 16606
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1950G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1950G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+832G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-46G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1950G>A
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31068
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13102
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6094
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5214
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4303
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26670
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

9-134479490-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134479490
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134479490
    reference: chr 9
allele count: 1
allele frequency: 6.110975311659741e-5
allele num: 16364
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-1954G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-1954G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+828G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-50G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-1954G>A
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13170
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 890
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
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genotype quality: GenotypeQuality
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  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
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genotype quality: GenotypeQuality
  all individuals: 4047
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6947
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

9-134480269-AGG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480269
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480267
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 9612
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2735_1909-2734delCC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-831_44-830delCC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+47_647+48delCC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2735_1906-2734delCC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2735_1855-2734delCC
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7008
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1996
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14400
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 619
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1399
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: AGG
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

9-134480271-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480271
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480271
    reference: chr 9
allele count: 2
allele frequency: 2.053809817210926e-4
allele num: 9738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2735C>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-831C>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2735C>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+47C>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2735C>G
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6510
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14040
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1423
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

9-134480272-G-GGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480272
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480274
    reference: chr 9
allele count: 539
allele frequency: 8.560991105463786e-2
allele num: 6296
alternate allele: GGT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2738_1909-2737dupAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2738_1906-2737dupAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+44_647+45dupAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-834_44-833dupAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2738_1855-2737dupAC
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.25e1
  variant carriers: 320
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.75e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17518
  bin: 2.5e0
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 7.5e0
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 1.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 6.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 6.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 13850
  bin: 2.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 8861
  bin: 7.5e0
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 21
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

9-134480272-G-GGTGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480272
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480276
    reference: chr 9
allele count: 84
allele frequency: 1.33418043202033e-2
allele num: 6296
alternate allele: GGTGT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+42_647+45dupACAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2740_1909-2737dupACAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2740_1855-2737dupACAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2740_1906-2737dupACAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-836_44-833dupACAC
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17518
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 7.5e0
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 13850
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8861
  bin: 7.5e0
  variant carriers: 3
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

9-134480272-GGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480272
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480270
    reference: chr 9
allele count: 2342
allele frequency: 3.719822109275731e-1
allele num: 6296
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-834_44-833delAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2738_1855-2737delAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2738_1909-2737delAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2738_1906-2737delAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+44_647+45delAC
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 7.5e0
  variant carriers: 678
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.25e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.75e1
  variant carriers: 668
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17518
  bin: 2.5e0
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.25e1
  variant carriers: 1064
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.25e1
  variant carriers: 167
genotype quality: GenotypeQuality
  all individuals: 8861
  bin: 7.5e0
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 132
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.25e1
  variant carriers: 149
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 6.75e1
  variant carriers: 174
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 1.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 13850
  bin: 2.5e0
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.75e1
  variant carriers: 87
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.25e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 105
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 1287
num of homozygotes: 9
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: GGT
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

9-134480272-GGTGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480272
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480268
    reference: chr 9
allele count: 119
allele frequency: 1.890088945362135e-2
allele num: 6296
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-836_44-833delACAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2740_1906-2737delACAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2740_1909-2737delACAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+42_647+45delACAC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2740_1855-2737delACAC
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17518
  bin: 2.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 7.5e0
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 78
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 8861
  bin: 7.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 1.25e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 13850
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 14
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: Other
reference allele: GGTGT
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

9-134480272-GGTGTGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480272
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480266
    reference: chr 9
allele count: 6
allele frequency: 9.529860228716646e-4
allele num: 6296
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13850
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8861
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 140
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 64
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 566
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 38
  num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: GGTGTGT
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

9-134480272-GGTGTGTGTGTGTGT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480272
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480258
    reference: chr 9
allele count: 3
allele frequency: 4.764930114358323e-4
allele num: 6296
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17518
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1593
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13850
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8861
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 4.233700254022015e-4
  allele num: 2362
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 566
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 64
  num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 2
  allele frequency: 7.142857142857143e-4
  allele num: 2800
  num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
reference allele: GGTGTGTGTGTGTGT
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum

9-134480274-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480274
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480273
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 804
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2739delC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-835delC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+43delC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2739delC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2739delC
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16700
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3407
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15231
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6864
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: TG
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

9-134480276-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480276
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480275
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 6876
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2741delC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-837delC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2741delC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2741delC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+41delC
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3480
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21056
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1326
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9809
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: TG
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP

9-134480300-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480300
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480300
    reference: chr 9
allele count: 18
allele frequency: 1.543474532670211e-3
allele num: 11662
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2764A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2764A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-860A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2764A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+18A>G
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 7.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28918
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5528
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 24213
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

9-134480300-T-TGC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480300
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480302
    reference: chr 9
allele count: 3
allele frequency: 2.572457554450352e-4
allele num: 11662
alternate allele: TGC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+16_647+17dupGC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2766_1909-2765dupGC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2766_1855-2765dupGC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2766_1906-2765dupGC
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-862_44-861dupGC
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28918
  bin: 2.5e0
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2281
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5528
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 3.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2761
  bin: 2.25e1
  variant carriers: 4
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

9-134480301-G-GCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480301
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480303
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 12440
alternate allele: GCA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-863_44-862dupTG
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2767_1906-2766dupTG
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2767_1855-2766dupTG
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+15_647+16dupTG
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2767_1909-2766dupTG
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29483
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3012
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25388
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum

9-134480304-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480304
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480304
    reference: chr 9
allele count: 3
allele frequency: 2.371166613974075e-4
allele num: 12652
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2768G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-864G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2768G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+14G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2768G>A
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30990
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3371
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27435
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

9-134480305-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480305
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480305
    reference: chr 9
allele count: 1
allele frequency: 7.784524365561264e-5
allele num: 12846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-865C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2769C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2769C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2769C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+13C>T
  variant of: http://identifiers.org/hgnc/4568
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31960
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1373
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28665
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3377
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

9-134480310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480310
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480310
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 13222
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.647+8C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-870C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2774C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2774C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2774C>T
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: splice region
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3212
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1338
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30074
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 6.75e1
  variant carriers: 0
hgvs: c.647+8C>T
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

9-134480321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480321
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480321
    reference: chr 9
allele count: 1
allele frequency: 7.183908045977011e-5
allele num: 13920
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-881C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2785C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.644C>T
  hgvsp: ENST00000419442.1:c.644C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2785C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2785C>T
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35686
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6896
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33015
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2464
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asp215Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

9-134480338-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480338
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480338
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 15098
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-898G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.627G>A
  hgvsp: ENSP00000394296.1:p.Glu210Lys
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2802G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2802G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2802G>A
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13540
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31460
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10709
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu210Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD

9-134480339-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480339
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480339
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 15444
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2803C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.626C>T
  hgvsp: ENST00000419442.1:c.626C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2803C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-899C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2803C>T
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14813
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32484
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30842
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12273
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser209Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

9-134480346-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480346
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480346
    reference: chr 9
allele count: 11
allele frequency: 6.666666666666666e-4
allele num: 16500
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2810T>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-906T>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.619T>C
  hgvsp: ENSP00000394296.1:p.Leu207Pro
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2810T>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2810T>C
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20781
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 4263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27325
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
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genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 4.25e1
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genotype quality: GenotypeQuality
  all individuals: 18510
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
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genotype quality: GenotypeQuality
  all individuals: 26274
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Leu207Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum

9-134480357-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480357
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480357
    reference: chr 9
allele count: 1
allele frequency: 5.204538357447694e-5
allele num: 19214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.608T>C
  hgvsp: ENST00000419442.1:c.608T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2821T>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-917T>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2821T>C
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2821T>C
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28660
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19052
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 85
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genotype depth: GenotypeDepth
  all individuals: 4670
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1633
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6103
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18458
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26312
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn203Asn
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

9-134480364-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480364
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480364
    reference: chr 9
allele count: 13
allele frequency: 6.028566128733074e-4
allele num: 21564
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.601A>G
  hgvsp: ENSP00000394296.1:p.His201Arg
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2828A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-924A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2828A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2828A>G
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14467
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32280
  bin: 7.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2626
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14086
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29866
  bin: 2.25e1
  variant carriers: 0
hgvs: p.His201Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

9-134480387-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480387
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480387
    reference: chr 9
allele count: 17
allele frequency: 4.617808442440376e-4
allele num: 36814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2851G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2851G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-947G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.578G>A
  hgvsp: ENST00000419442.1:c.578G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2851G>A
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34650
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4743
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4391
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10746
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 881
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 833
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser193Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

9-134480395-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480395
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480395
    reference: chr 9
allele count: 1
allele frequency: 2.098019469620678e-5
allele num: 47664
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-955C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.570C>T
  hgvsp: ENSP00000394296.1:p.Pro191Ser
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2859C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2859C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2859C>T
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31289
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14440
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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  bin: 7.25e1
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 553
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genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro191Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

9-134480398-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480398
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480398
    reference: chr 9
allele count: 2
allele frequency: 3.898939488459139e-5
allele num: 51296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-958G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2862G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2862G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2862G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.567G>A
  hgvsp: ENSP00000394296.1:p.Gly190Arg
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29655
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5018
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16154
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly190Arg
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

9-134480399-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480399
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480399
    reference: chr 9
allele count: 2
allele frequency: 3.73385109401837e-5
allele num: 53564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2863C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-959C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.566C>T
  hgvsp: ENST00000419442.1:c.566C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2863C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2863C>T
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16308
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29105
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1631
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp189Asp
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

9-134480405-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480405
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480405
    reference: chr 9
allele count: 2
allele frequency: 3.247069519758418e-5
allele num: 61594
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-965C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2869C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.560C>T
  hgvsp: ENST00000419442.1:c.560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2869C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2869C>T
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2351
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 324
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25584
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 1691
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Thr187Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

9-134480407-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480407
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480407
    reference: chr 9
allele count: 1
allele frequency: 1.577187559144533e-5
allele num: 63404
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2871A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-967A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.558A>G
  hgvsp: ENSP00000394296.1:p.Thr187Ala
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2871A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2871A>G
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
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genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20082
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 2.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 1.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 810
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 2.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
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  variant carriers: 0
hgvs: p.Thr187Ala
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

http://identifiers.org/exac.variant/9-134480422-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480422
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480422
    reference: chr 9
allele count: 1
allele frequency: 1.284191601386927e-5
allele num: 77870
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2886G>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2886G>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2886G>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.543G>T
  hgvsp: ENSP00000394296.1:p.Gly182Cys
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-982G>T
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 1.25e1
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genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1710
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly182Cys
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

9-134480422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480422
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480422
    reference: chr 9
allele count: 2
allele frequency: 2.568383202773854e-5
allele num: 77870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.543G>A
  hgvsp: ENSP00000394296.1:p.Gly182Ser
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2886G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2886G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2886G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-982G>A
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18843
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26837
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly182Ser
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS

9-134480423-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480423
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480423
    reference: chr 9
allele count: 2
allele frequency: 2.53151739152448e-5
allele num: 79004
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2887C>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-983C>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.542C>G
  hgvsp: ENST00000419442.1:c.542C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2887C>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2887C>G
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1708
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26683
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1502
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18268
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
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genotype quality: GenotypeQuality
  all individuals: 2022
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genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala181Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

9-134480428-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480428
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480428
    reference: chr 9
allele count: 1
allele frequency: 1.181586161262879e-5
allele num: 84632
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.537A>G
  hgvsp: ENSP00000394296.1:p.Met180Val
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2892A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-988A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2892A>G
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2892A>G
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14759
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
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genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1324
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31468
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 7.5e0
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
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genotype quality: GenotypeQuality
  all individuals: 681
  bin: 4.75e1
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genotype quality: GenotypeQuality
  all individuals: 214
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 343
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15919
  bin: 2.25e1
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genotype quality: GenotypeQuality
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  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Met180Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

9-134480430-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480430
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480430
    reference: chr 9
allele count: 2
allele frequency: 2.333014488019971e-5
allele num: 85726
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2894C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-990C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2894C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2894C>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.535C>T
  hgvsp: ENSP00000394296.1:p.Thr179Ile
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4137
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1003
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6113
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 29395
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1011
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31839
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1397
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr179Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/9-134480437-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480437
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480437
    reference: chr 9
allele count: 1
allele frequency: 1.121377949224007e-5
allele num: 89176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.528G>T
  hgvsp: ENSP00000394296.1:p.Val177Leu
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2901G>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-997G>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2901G>T
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2901G>T
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13653
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val177Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

9-134480437-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134480437
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134480437
    reference: chr 9
allele count: 4
allele frequency: 4.485511796896026e-5
allele num: 89176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000407210
  ensembl transcript: ENST00000414781
  gene symbol: RAPGEF1
  hgvsc: ENST00000414781.1:c.44-997G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361264
  ensembl transcript: ENST00000372190
  gene symbol: RAPGEF1
  hgvsc: ENST00000372190.3:c.1909-2901G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000394296
  ensembl transcript: ENST00000419442
  gene symbol: RAPGEF1
  hgvsc: ENST00000419442.1:c.528G>A
  hgvsp: ENSP00000394296.1:p.Val177Met
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361269
  ensembl transcript: ENST00000372195
  gene symbol: RAPGEF1
  hgvsc: ENST00000372195.1:c.1906-2901G>A
  variant of: http://identifiers.org/hgnc/4568
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107263
  ensembl protein: ENSP00000361263
  ensembl transcript: ENST00000372189
  gene symbol: RAPGEF1
  hgvsc: ENST00000372189.3:c.1855-2901G>A
  variant of: http://identifiers.org/hgnc/4568
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3862
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30729
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13653
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1039
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 915
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val177Met
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
reference allele: C

GenotypeQuality
all individuals: 17062
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1960
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.123048094940662e-4
allele num: 3202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.123e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.16541e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.27e0

QD
type: SiteQuality
SIO_000300: 1.121e1

GenotypeQuality
all individuals: 1174
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.010917913465427e-4
allele num: 29676
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 6.510416666666666e-4
allele num: 4608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.012048192771085e-4
allele num: 3320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1996
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

QD
type: SiteQuality
SIO_000300: 1.241e1

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.900000000000001e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.166e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

DP
type: SiteQuality
SIO_000300: 8.10046e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 382
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15119
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.728569506122998e-5
allele num: 29724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1990
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.828e-1

QD
type: SiteQuality
SIO_000300: 5.58e0

FS
type: SiteQuality
SIO_000300: 8.090000000000001e-1

DP
type: SiteQuality
SIO_000300: 8.11854e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

GenotypeQuality
all individuals: 380
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14234
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.013863773357444e-4
allele num: 3318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1996
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.91e-1

FS
type: SiteQuality
SIO_000300: 1.569e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.73e-1

DP
type: SiteQuality
SIO_000300: 8.06527e5

QD
type: SiteQuality
SIO_000300: 8.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.06e-1

GenotypeQuality
all individuals: 14442
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 381
bin: 5.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.01002004008016e-4
allele num: 1996
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 7.472826086956522e-4
allele num: 29440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3284
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.045066991473812e-4
allele num: 3284
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 4.357298474945534e-4
allele num: 4590
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.015316404675534e-4
allele num: 9924
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

DP
type: SiteQuality
SIO_000300: 8.1244e5

FS
type: SiteQuality
SIO_000300: 5.33e-1

QD
type: SiteQuality
SIO_000300: 9.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

GenotypeQuality
all individuals: 1001
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14308
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2014
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 3330
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.379748546708125e-5
allele num: 29588
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3346
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 8.02283e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.059e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.671e0

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 418
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4610
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2016
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 9.085402786190188e-4
allele num: 3302
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 29372
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

QD
type: SiteQuality
SIO_000300: 1.861e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 2.114e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.71e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 18
allele frequency: 6.176228383200659e-4
allele num: 29144
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9978
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European (Finnish)
type: Population
allele count: 1
allele frequency: 4.950495049504951e-4
allele num: 2020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3290
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 7.94028e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.76e-1

QD
type: SiteQuality
SIO_000300: 9.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

FS
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3144
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 5.257623554153522e-4
allele num: 1902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4416
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South Asian
type: Population
allele count: 2
allele frequency: 2.034587995930824e-4
allele num: 9830
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3052
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 27784
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.315e0

DP
type: SiteQuality
SIO_000300: 7.57168e5

VQSLOD
type: SiteQuality
SIO_000300: -1.607e0

BaseQRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.1162e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.08e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 6.397952655150352e-4
allele num: 3126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4422
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.53771e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

FS
type: SiteQuality
SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

QD
type: SiteQuality
SIO_000300: 1.432e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.262e0

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.929999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.11e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 505
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4104
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.954132068011071e-5
allele num: 25290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1702
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.364e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 3.039e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.24e-1

DP
type: SiteQuality
SIO_000300: 7.06842e5

QD
type: SiteQuality
SIO_000300: 5.37e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2734
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.109704641350211e-4
allele num: 9480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.031607805192711e-5
allele num: 24804
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e0

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.9814e5

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.72e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 3948
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 24290
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1622
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East Asian
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allele frequency: 0.0e0
allele num: 2664
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South Asian
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allele count: 2
allele frequency: 2.123593119558293e-4
allele num: 9418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2548
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
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BaseQRankSum
type: SiteQuality
SIO_000300: 4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 1524
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 2.890173410404624e-3
allele num: 346
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 4.49034575662326e-5
allele num: 22270
num of homozygotes: 0

East Asian
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South Asian
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allele num: 9118
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FS
type: SiteQuality
SIO_000300: 2.183e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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allele frequency: 5.530973451327434e-4
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European (Finnish)
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Latino
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Other
type: Population
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allele num: 324
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East Asian
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allele frequency: 4.557885141294439e-4
allele num: 2194
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 21036
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FS
type: SiteQuality
SIO_000300: 4.219e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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African
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South Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 4.728579534707774e-5
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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QD
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
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allele frequency: 0.0e0
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East Asian
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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South Asian
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allele frequency: 0.0e0
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African
type: Population
allele count: 1
allele frequency: 3.146633102580239e-4
allele num: 3178
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.341e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.087e0

DP
type: SiteQuality
SIO_000300: 5.65763e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.79e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.047e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.64e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.371e1

GenotypeQuality
all individuals: 290
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 963
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2302
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1098
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1278
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.19e0

DP
type: SiteQuality
SIO_000300: 5.48655e5

VQSLOD
type: SiteQuality
SIO_000300: -1.115e0

FS
type: SiteQuality
SIO_000300: 1.0804e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.05e-2

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.7e-2

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2319
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
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GenotypeQuality
all individuals: 599
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.385e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 4.82662e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

QD
type: SiteQuality
SIO_000300: 6.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.16e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

GenotypeQuality
all individuals: 1052
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8748
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5124
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.847140292382662e-4
allele num: 7798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11830
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e0

VQSLOD
type: SiteQuality
SIO_000300: 3.09e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.25e-2

DP
type: SiteQuality
SIO_000300: 4.66348e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.084e1

GenotypeQuality
all individuals: 1697
bin: 6.25e1
variant carriers: 668

GenotypeQuality
all individuals: 577
bin: 4.75e1
variant carriers: 286

GenotypeQuality
all individuals: 1215
bin: 2.75e1
variant carriers: 791

GenotypeQuality
all individuals: 718
bin: 8.25e1
variant carriers: 613

GenotypeQuality
all individuals: 5995
bin: 9.75e1
variant carriers: 5568

European (Finnish)
type: Population
allele count: 262
allele frequency: 4.323432343234324e-1
allele num: 606
num of homozygotes: 49

Latino
type: Population
allele count: 129
allele frequency: 2.461832061068702e-1
allele num: 524
num of homozygotes: 15

European (Non-Finnish)
type: Population
allele count: 4188
allele frequency: 3.931656027037176e-1
allele num: 10652
num of homozygotes: 793

South Asian
type: Population
allele count: 2541
allele frequency: 3.317232375979112e-1
allele num: 7660
num of homozygotes: 432

Other
type: Population
allele count: 73
allele frequency: 3.57843137254902e-1
allele num: 204
num of homozygotes: 11

African
type: Population
allele count: 222
allele frequency: 9.643788010425716e-2
allele num: 2302
num of homozygotes: 12

East Asian
type: Population
allele count: 154
allele frequency: 2.0e-1
allele num: 770
num of homozygotes: 13

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.754e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e-1

DP
type: SiteQuality
SIO_000300: 4.77663e5

VQSLOD
type: SiteQuality
SIO_000300: 5.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.323e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.302e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

GenotypeQuality
all individuals: 6273
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 428
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variant carriers: 0

GenotypeQuality
all individuals: 609
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variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 3.189792663476874e-4
allele num: 6270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4832
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1030
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.504e0

DP
type: SiteQuality
SIO_000300: 2.92732e5

VQSLOD
type: SiteQuality
SIO_000300: -1.842e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.370000000000001e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.02e0

QD
type: SiteQuality
SIO_000300: 1.266e1

GenotypeQuality
all individuals: 27179
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 237
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variant carriers: 3

GenotypeQuality
all individuals: 7900
bin: 2.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 5.376344086021506e-3
allele num: 372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1034
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.249e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 3.07625e5

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.02e-2

GenotypeQuality
all individuals: 27561
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variant carriers: 1

GenotypeQuality
all individuals: 1174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 234
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GenotypeQuality
all individuals: 864
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1054
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5026
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.19461e5

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.81e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 1.074e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 89
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GenotypeQuality
all individuals: 115
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1102
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.474926253687316e-4
allele num: 6780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.172e0

FS
type: SiteQuality
SIO_000300: 3.188e0

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.389e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.11e-2

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.949e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.18e-1

DP
type: SiteQuality
SIO_000300: 3.69207e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.45602795573675e-4
allele num: 6868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5630
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.789999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e0

DP
type: SiteQuality
SIO_000300: 3.78465e5

VQSLOD
type: SiteQuality
SIO_000300: -2.954e0

FS
type: SiteQuality
SIO_000300: 3.274e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.04e-2

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -7.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.296e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 227
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1578
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 2
allele frequency: 1.398601398601399e-3
allele num: 1430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1166
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 9.780907668231612e-5
allele num: 10224
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.388e5

VQSLOD
type: SiteQuality
SIO_000300: 3.15e-1

QD
type: SiteQuality
SIO_000300: 6.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.48e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 1.129e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.379420144126027e-5
allele num: 11934
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2026
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.82e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 5.72232e5

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

FS
type: SiteQuality
SIO_000300: 1.82e0

VQSLOD
type: SiteQuality
SIO_000300: -2.609e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.08e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.090000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.47e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 83
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GenotypeQuality
all individuals: 476
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GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.584786053882726e-4
allele num: 12620
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2126
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1788
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.95e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 5.81759e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.17e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.421e-1

QD
type: SiteQuality
SIO_000300: 8.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 32826
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2066
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.501501501501501e-4
allele num: 13320
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.772e0

QD
type: SiteQuality
SIO_000300: 5.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

DP
type: SiteQuality
SIO_000300: 5.80347e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 2.297794117647059e-3
allele num: 2176
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13136
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.21e-1

DP
type: SiteQuality
SIO_000300: 5.74287e5

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.86e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

QD
type: SiteQuality
SIO_000300: 7.22e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2004
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.340823970037453e-4
allele num: 8544
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1858
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.37e-2

FS
type: SiteQuality
SIO_000300: 3.031e0

QD
type: SiteQuality
SIO_000300: 1.284e1

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.252e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.07e-1

DP
type: SiteQuality
SIO_000300: 5.62493e5

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1718
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.02008032128514e-4
allele num: 1992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1802
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 8.83e0

VQSLOD
type: SiteQuality
SIO_000300: -1.964e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.27e-2

DP
type: SiteQuality
SIO_000300: 5.17725e5

FS
type: SiteQuality
SIO_000300: 4.269e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.08e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 635
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e-1

DP
type: SiteQuality
SIO_000300: 4.34881e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.94e-2

QD
type: SiteQuality
SIO_000300: 2.087e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 166
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1006
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.098659635245001e-4
allele num: 9102
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.398e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.24e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.508e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

QD
type: SiteQuality
SIO_000300: 3.84e0

DP
type: SiteQuality
SIO_000300: 4.19497e5

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1454
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8742
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 912
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.10998e5

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 1410
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.02885e5

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -5.59e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

African
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East Asian
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Latino
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allele frequency: 0.0e0
allele num: 400
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Other
type: Population
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.950000000000001e-2

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
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allele num: 5836
num of homozygotes: 0

East Asian
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African
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Other
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.186e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

MQ
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FS
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 4.02e0

GenotypeQuality
all individuals: 135
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3940
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.144654088050315e-3
allele num: 636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4322
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.012e0

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

MQ
type: SiteQuality
SIO_000300: 5.728e1

QD
type: SiteQuality
SIO_000300: 1.123e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.51e0

FS
type: SiteQuality
SIO_000300: 3.85e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.52e-2

DP
type: SiteQuality
SIO_000300: 2.01143e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

GenotypeQuality
all individuals: 230
bin: 7.75e1
variant carriers: 29

GenotypeQuality
all individuals: 1746
bin: 9.75e1
variant carriers: 326

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 41

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 20

GenotypeQuality
all individuals: 228
bin: 7.25e1
variant carriers: 55

African
type: Population
allele count: 66
allele frequency: 1.166077738515901e-1
allele num: 566
num of homozygotes: 0

Latino
type: Population
allele count: 10
allele frequency: 7.142857142857142e-2
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 321
allele frequency: 1.146428571428571e-1
allele num: 2800
num of homozygotes: 0

East Asian
type: Population
allele count: 34
allele frequency: 1.042944785276074e-1
allele num: 326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 104
allele frequency: 4.403048264182896e-2
allele num: 2362
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 6.25e-2
allele num: 64
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.41e0

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 1.88946e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.493e-1

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 172
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 230
bin: 7.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.693480101608806e-3
allele num: 2362
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 6.428571428571428e-2
allele num: 140
num of homozygotes: 0

South Asian
type: Population
allele count: 50
allele frequency: 1.785714285714286e-2
allele num: 2800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

East Asian
type: Population
allele count: 12
allele frequency: 3.680981595092025e-2
allele num: 326
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 1.236749116607774e-2
allele num: 566
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.125e-2
allele num: 64
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.493e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

DP
type: SiteQuality
SIO_000300: 1.88946e5

QD
type: SiteQuality
SIO_000300: 7.41e0

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 66

GenotypeQuality
all individuals: 193
bin: 9.25e1
variant carriers: 143

GenotypeQuality
all individuals: 230
bin: 7.75e1
variant carriers: 195

GenotypeQuality
all individuals: 154
bin: 6.25e1
variant carriers: 118

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 108

African
type: Population
allele count: 219
allele frequency: 3.869257950530035e-1
allele num: 566
num of homozygotes: 4

South Asian
type: Population
allele count: 962
allele frequency: 3.435714285714286e-1
allele num: 2800
num of homozygotes: 5

European (Non-Finnish)
type: Population
allele count: 965
allele frequency: 4.085520745131245e-1
allele num: 2362
num of homozygotes: 0

East Asian
type: Population
allele count: 112
allele frequency: 3.43558282208589e-1
allele num: 326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 3.157894736842105e-1
allele num: 38
num of homozygotes: 0

Latino
type: Population
allele count: 50
allele frequency: 3.571428571428572e-1
allele num: 140
num of homozygotes: 0

Other
type: Population
allele count: 22
allele frequency: 3.4375e-1
allele num: 64
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

DP
type: SiteQuality
SIO_000300: 1.88946e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.41e0

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.493e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 159
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 9

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 154
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 228
bin: 7.25e1
variant carriers: 7

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.631578947368421e-2
allele num: 38
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 1.524132091447926e-2
allele num: 2362
num of homozygotes: 0

South Asian
type: Population
allele count: 46
allele frequency: 1.642857142857143e-2
allele num: 2800
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 7.142857142857143e-3
allele num: 140
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 3.886925795053003e-2
allele num: 566
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 3.374233128834356e-2
allele num: 326
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.125e-2
allele num: 64
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.493e-1

QD
type: SiteQuality
SIO_000300: 7.41e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

DP
type: SiteQuality
SIO_000300: 1.88946e5

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.233700254022015e-4
allele num: 2362
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 1.428571428571429e-3
allele num: 2800
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.067484662576687e-3
allele num: 326
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.493e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 7.41e0

DP
type: SiteQuality
SIO_000300: 1.88946e5

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

QD
type: SiteQuality
SIO_000300: 7.41e0

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.493e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

DP
type: SiteQuality
SIO_000300: 1.88946e5

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.623e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-1

QD
type: SiteQuality
SIO_000300: 7.78e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.719e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 1.33624e5

VQSLOD
type: SiteQuality
SIO_000300: 4.49e-1

GenotypeQuality
all individuals: 586
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 6.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.001e-1

MQ
type: SiteQuality
SIO_000300: 5.755e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.93015e5

GenotypeQuality
all individuals: 258
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 106
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 35
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 2761
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 3.754106053496011e-3
allele num: 4262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.90625e-3
allele num: 256
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 7.8125e-3
allele num: 128
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5700
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.544999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 1.1494e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
type: SiteQuality
SIO_000300: 7.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.65e-2

DP
type: SiteQuality
SIO_000300: 2.28415e5

GenotypeQuality
all individuals: 258
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1312
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 24213
bin: 7.5e0
variant carriers: 15

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 765
bin: 2.75e1
variant carriers: 6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 82
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 7.038948850305022e-4
allele num: 4262
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 2.28415e5

FS
type: SiteQuality
SIO_000300: 1.1494e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.544999999999999e-1

QD
type: SiteQuality
SIO_000300: 7.97e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.65e-2

GenotypeQuality
all individuals: 798
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.069999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.907e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.319e-1

QD
type: SiteQuality
SIO_000300: 1.901e1

DP
type: SiteQuality
SIO_000300: 2.28615e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.488e0

GenotypeQuality
all individuals: 116
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 84
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 4.772510340439071e-4
allele num: 6286
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.94e-2

DP
type: SiteQuality
SIO_000300: 2.37122e5

VQSLOD
type: SiteQuality
SIO_000300: -1.911e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.165e0

QD
type: SiteQuality
SIO_000300: 8.44e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.167316861725184e-4
allele num: 4614
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.34e-1

DP
type: SiteQuality
SIO_000300: 2.43829e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-2

QD
type: SiteQuality
SIO_000300: 7.37e0

MQRankSum
type: SiteQuality
SIO_000300: -1.603e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.699e0

FS
type: SiteQuality
SIO_000300: 5.78e0

MQ
type: SiteQuality
SIO_000300: 6.049e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 284
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 80
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6648
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4744
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 2.57375e5

MQ
type: SiteQuality
SIO_000300: 6.178e1

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.119999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.546e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e0

QD
type: SiteQuality
SIO_000300: 1.066e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.311258278145695e-3
allele num: 302
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7018
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.94942e5

ClippingRankSum
type: SiteQuality
SIO_000300: 4.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.954e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

FS
type: SiteQuality
SIO_000300: 3.592e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.79e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.594e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.94e-2

DP
type: SiteQuality
SIO_000300: 3.57802e5

MQ
type: SiteQuality
SIO_000300: 6.067e1

QD
type: SiteQuality
SIO_000300: 3.86e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7500
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -4.203e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 3.67607e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.569999999999999e-2

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.571338780641106e-3
allele num: 6364
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.617801047120419e-3
allele num: 382
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1054
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.38e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 4.09554e5

VQSLOD
type: SiteQuality
SIO_000300: -2.811e-1

FS
type: SiteQuality
SIO_000300: 3.531e0

QD
type: SiteQuality
SIO_000300: 1.438e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.240387000744232e-4
allele num: 8062
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.855e1

MQRankSum
type: SiteQuality
SIO_000300: -5.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.82e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.869e0

DP
type: SiteQuality
SIO_000300: 4.69712e5

QD
type: SiteQuality
SIO_000300: 1.731e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9500
num of homozygotes: 0

East Asian
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allele count: 13
allele frequency: 1.097972972972973e-2
allele num: 1184
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
type: Population
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allele frequency: 0.0e0
allele num: 8000
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MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.06e-2

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 5.06182e5

FS
type: SiteQuality
SIO_000300: 8.179999999999999e-1

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 2622
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 8922
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European (Non-Finnish)
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allele frequency: 5.722014148980441e-4
allele num: 19224
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
type: Population
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African
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allele frequency: 2.233804914370812e-3
allele num: 2686
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.5572e5

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.903e1

QD
type: SiteQuality
SIO_000300: 1.236e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 2.855511136493432e-4
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European (Finnish)
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Other
type: Population
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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allele frequency: 5.238344683080147e-4
allele num: 3818
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Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e-1

QD
type: SiteQuality
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InbreedingCoeff
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DP
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
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allele count: 1
allele frequency: 9.982032341784787e-5
allele num: 10018
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3964
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3868
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.354128932716174e-5
allele num: 29814
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.17e0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.25e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

DP
type: SiteQuality
SIO_000300: 7.84795e5

FS
type: SiteQuality
SIO_000300: 1.5999e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.423e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

QD
type: SiteQuality
SIO_000300: 1.453e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10598
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.154243860404998e-4
allele num: 4642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.892681515765114e-5
allele num: 34570
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.564e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.354e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.11e-1

QD
type: SiteQuality
SIO_000300: 3.76e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.46362e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 561
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 850
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10692
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.087682672233821e-4
allele num: 4790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2684
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35670
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 470
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.26e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.97e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 8.62272e5

GenotypeQuality
all individuals: 1554
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 26837
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variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.272004362248375e-5
allele num: 44014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11762
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

DP
type: SiteQuality
SIO_000300: 9.76404e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

FS
type: SiteQuality
SIO_000300: 1.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.339e-1

GenotypeQuality
all individuals: 491
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.544008724496751e-5
allele num: 44014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3640
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.05e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

DP
type: SiteQuality
SIO_000300: 9.76404e5

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.339e-1

QD
type: SiteQuality
SIO_000300: 7.87e0

FS
type: SiteQuality
SIO_000300: 1.08e0

GenotypeQuality
all individuals: 1126
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 190
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variant carriers: 2

GenotypeQuality
all individuals: 52
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11850
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.478480899278965e-5
allele num: 44658
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.97e-1

DP
type: SiteQuality
SIO_000300: 9.86187e5

FS
type: SiteQuality
SIO_000300: 6.025e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.397e-1

QD
type: SiteQuality
SIO_000300: 9.4e0

GenotypeQuality
all individuals: 423
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 1003
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4140
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5850
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.356116083536751e-4
allele num: 7374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.46e-1

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

FS
type: SiteQuality
SIO_000300: 1.828e0

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 1.03456e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.444e-1

GenotypeQuality
all individuals: 190
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 741
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 529
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GenotypeQuality
all individuals: 375
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4206
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.130353971335344e-5
allele num: 48422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.074e0

DP
type: SiteQuality
SIO_000300: 1.045175e6

FS
type: SiteQuality
SIO_000300: 9.85e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

QD
type: SiteQuality
SIO_000300: 1.197e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.59e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

GenotypeQuality
all individuals: 194
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variant carriers: 1

GenotypeQuality
all individuals: 2281
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GenotypeQuality
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GenotypeQuality
all individuals: 915
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GenotypeQuality
all individuals: 182
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50284
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12656
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.427347987439338e-4
allele num: 7006
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.096e-1

FS
type: SiteQuality
SIO_000300: 2.847e0

DP
type: SiteQuality
SIO_000300: 1.07994e6

MQRankSum
type: SiteQuality
SIO_000300: -3.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

MQ
type: SiteQuality
SIO_000300: 5.838e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

QD
type: SiteQuality
SIO_000300: 1.039e1

GenotypeQuality
all individuals: 194
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variant carriers: 4

GenotypeQuality
all individuals: 2281
bin: 6.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 33065
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.954816641476414e-5
allele num: 50284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6094
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7006
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0