5-125912727-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912727
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912728
    reference: chr 5
allele count: 3
allele frequency: 2.472187886279357e-5
allele num: 121350
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.177+43dupA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.650+43dupA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.198+43dupA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.481+43dupA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.670+43dupA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.239+43dupA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.731+43dupA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.563+43dupA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.650+43dupA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*516+43dupA
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11786
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26984
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-125912733-ATCAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912733
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912729
    reference: chr 5
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.650+34_650+37delGTGA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.198+34_198+37delGTGA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.239+34_239+37delGTGA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.670+34_670+37delGTGA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.650+34_650+37delGTGA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.563+34_563+37delGTGA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.177+34_177+37delGTGA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.481+34_481+37delGTGA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*516+34_*516+37delGTGA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.731+34_731+37delGTGA
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7767
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2188
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: ATCAC
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

5-125912746-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912746
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912746
    reference: chr 5
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.177+25T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*516+25T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.650+25T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.731+25T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.198+25T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.670+25T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.239+25T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.563+25T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.481+25T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.650+25T>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7783
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

5-125912748-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912748
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912748
    reference: chr 5
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.731+23T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.650+23T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.239+23T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.198+23T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*516+23T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.177+23T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.481+23T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.650+23T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.563+23T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.670+23T>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

5-125912748-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912748
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912747
    reference: chr 5
allele count: 3
allele frequency: 2.471576866040534e-5
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.670+22delA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.650+22delA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.650+22delA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.198+22delA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.731+22delA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.177+22delA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.239+22delA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.481+22delA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.563+22delA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*516+22delA
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12725
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: AT
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-125912753-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912753
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912753
    reference: chr 5
allele count: 3
allele frequency: 2.471454698235381e-5
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.177+18T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.650+18T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.198+18T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.481+18T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.239+18T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*516+18T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.731+18T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.670+18T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.563+18T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.650+18T>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27330
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

5-125912756-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912756
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912756
    reference: chr 5
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.670+15C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.481+15C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.198+15C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.239+15C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.650+15C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.177+15C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.563+15C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*516+15C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.731+15C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.650+15C>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37320
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2189
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

5-125912757-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912757
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912757
    reference: chr 5
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.670+14A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.650+14A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*516+14A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.481+14A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.177+14A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.198+14A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.239+14A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.650+14A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.563+14A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.731+14A>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7800
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

5-125912766-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912766
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912766
    reference: chr 5
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.198+5G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.239+5G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.177+5G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.670+5G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.650+5G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*516+5G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.731+5G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.481+5G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.563+5G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.650+5G>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27407
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12700
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: c.650+5G>C
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

5-125912775-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912775
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912775
    reference: chr 5
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.727C>T
  hgvsp: ENSP00000414132.2:p.Leu243Phe
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.477C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.646C>T
  hgvsp: ENSP00000448593.1:p.Leu216Phe
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.559C>T
  hgvsp: ENSP00000447388.1:p.Leu187Phe
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.194C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*512C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.646C>T
  hgvsp: ENSP00000387123.3:p.Leu216Phe
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.235C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.173C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.666C>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu216Phe
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-125912791-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912791
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912791
    reference: chr 5
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.630C>G
  hgvsp: ENSP00000387123.3:p.Ile210Met
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.711C>G
  hgvsp: ENSP00000414132.2:p.Ile237Met
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.178C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.461C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.543C>G
  hgvsp: ENSP00000447388.1:p.Ile181Met
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*496C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.630C>G
  hgvsp: ENSP00000448593.1:p.Ile210Met
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.157C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.219C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.650C>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile210Met
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-125912794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912794
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912794
    reference: chr 5
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.627G>A
  hgvsp: ENSP00000448593.1:p.Met209Ile
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.647G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.540G>A
  hgvsp: ENSP00000447388.1:p.Met180Ile
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.708G>A
  hgvsp: ENSP00000414132.2:p.Met236Ile
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.154G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*493G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.175G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.627G>A
  hgvsp: ENSP00000387123.3:p.Met209Ile
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.216G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.458G>A
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9001
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met209Ile
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

5-125912799-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912799
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912799
    reference: chr 5
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.149G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.211G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.622G>A
  hgvsp: ENSP00000387123.3:p.Ala208Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*488G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.703G>A
  hgvsp: ENSP00000414132.2:p.Ala235Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.535G>A
  hgvsp: ENSP00000447388.1:p.Ala179Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.453G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.642G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.622G>A
  hgvsp: ENSP00000448593.1:p.Ala208Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.170G>A
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12612
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala208Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

5-125912800-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912800
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912800
    reference: chr 5
allele count: 5
allele frequency: 4.119226903494752e-5
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.534C>T
  hgvsp: ENST00000510111.2:c.534C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.169C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.621C>T
  hgvsp: ENST00000553117.1:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*487C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.621C>T
  hgvsp: ENST00000409134.3:c.621C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.641C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.702C>T
  hgvsp: ENST00000447989.2:c.702C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.210C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.452C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.148C>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile207Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

5-125912802-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912802
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912802
    reference: chr 5
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.208A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.619A>G
  hgvsp: ENSP00000448593.1:p.Ile207Val
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.146A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.450A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.532A>G
  hgvsp: ENSP00000447388.1:p.Ile178Val
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.619A>G
  hgvsp: ENSP00000387123.3:p.Ile207Val
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.700A>G
  hgvsp: ENSP00000414132.2:p.Ile234Val
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.639A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.167A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*485A>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile207Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

5-125912806-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912806
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912806
    reference: chr 5
allele count: 63
allele frequency: 5.190396941785166e-4
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*481C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.696C>T
  hgvsp: ENST00000447989.2:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.446C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.163C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.204C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.615C>T
  hgvsp: ENST00000553117.1:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.615C>T
  hgvsp: ENST00000409134.3:c.615C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.528C>T
  hgvsp: ENST00000510111.2:c.528C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.142C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  clinical significance: benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.635C>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 27474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12598
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
hgvs: p.Asn205Asn
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/5-125912814-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912814
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912814
    reference: chr 5
allele count: 2
allele frequency: 1.647799363949445e-5
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.688T>G
  hgvsp: ENSP00000414132.2:p.Trp230Gly
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.155T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.196T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.627T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.438T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.607T>G
  hgvsp: ENSP00000387123.3:p.Trp203Gly
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.520T>G
  hgvsp: ENSP00000447388.1:p.Trp174Gly
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*473T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.607T>G
  hgvsp: ENSP00000448593.1:p.Trp203Gly
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.134T>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8994
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8910
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Trp203Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

5-125912819-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912819
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912819
    reference: chr 5
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.191A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*468A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.683A>G
  hgvsp: ENSP00000414132.2:p.Tyr228Cys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.150A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.602A>G
  hgvsp: ENSP00000448593.1:p.Tyr201Cys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.622A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.602A>G
  hgvsp: ENSP00000387123.3:p.Tyr201Cys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.515A>G
  hgvsp: ENSP00000447388.1:p.Tyr172Cys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.433A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.129A>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12530
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27524
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr201Cys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP

5-125912824-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912824
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912824
    reference: chr 5
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.124A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.510A>G
  hgvsp: ENST00000510111.2:c.510A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.186A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*463A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.597A>G
  hgvsp: ENST00000553117.1:c.597A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.617A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.678A>G
  hgvsp: ENST00000447989.2:c.678A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.145A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.597A>G
  hgvsp: ENST00000409134.3:c.597A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.428A>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala199Ala
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

5-125912829-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912829
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912829
    reference: chr 5
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.612G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.592G>A
  hgvsp: ENSP00000448593.1:p.Val198Met
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.181G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.592G>A
  hgvsp: ENSP00000387123.3:p.Val198Met
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.119G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.673G>A
  hgvsp: ENSP00000414132.2:p.Val225Met
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.505G>A
  hgvsp: ENSP00000447388.1:p.Val169Met
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*458G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.140G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.423G>A
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8907
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1211
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val198Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: DP

5-125912832-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912832
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912832
    reference: chr 5
allele count: 1
allele frequency: 8.241169586787756e-6
allele num: 121342
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.589C>T
  hgvsp: ENSP00000387123.3:p.Pro197Ser
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.502C>T
  hgvsp: ENSP00000447388.1:p.Pro168Ser
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.589C>T
  hgvsp: ENSP00000448593.1:p.Pro197Ser
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*455C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.420C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.178C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.670C>T
  hgvsp: ENSP00000414132.2:p.Pro224Ser
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.609C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.137C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.116C>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro197Ser
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-125912833-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912833
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912833
    reference: chr 5
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.115C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.419C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.501C>T
  hgvsp: ENST00000510111.2:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.669C>T
  hgvsp: ENST00000447989.2:c.669C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.136C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*454C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.588C>T
  hgvsp: ENST00000553117.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.177C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.588C>T
  hgvsp: ENST00000409134.3:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.608C>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8978
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe196Phe
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

5-125912837-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912837
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912837
    reference: chr 5
allele count: 3
allele frequency: 2.472676920033628e-5
allele num: 121326
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.665A>G
  hgvsp: ENSP00000414132.2:p.Asn222Ser
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.584A>G
  hgvsp: ENSP00000448593.1:p.Asn195Ser
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.132A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.173A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.604A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.497A>G
  hgvsp: ENSP00000447388.1:p.Asn166Ser
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.584A>G
  hgvsp: ENSP00000387123.3:p.Asn195Ser
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.111A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*450A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.415A>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8971
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12453
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asn195Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

5-125912844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912844
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912844
    reference: chr 5
allele count: 3
allele frequency: 2.47320692497939e-5
allele num: 121300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*443G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.490G>A
  hgvsp: ENSP00000447388.1:p.Ala164Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.166G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.577G>A
  hgvsp: ENSP00000387123.3:p.Ala193Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.104G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.577G>A
  hgvsp: ENSP00000448593.1:p.Ala193Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.125G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.597G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.658G>A
  hgvsp: ENSP00000414132.2:p.Ala220Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.408G>A
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12458
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala193Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum

5-125912846-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912846
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912846
    reference: chr 5
allele count: 2
allele frequency: 1.648994937585542e-5
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.488C>T
  hgvsp: ENSP00000447388.1:p.Thr163Met
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*441C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.123C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.102C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.406C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.575C>T
  hgvsp: ENSP00000387123.3:p.Thr192Met
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.575C>T
  hgvsp: ENSP00000448593.1:p.Thr192Met
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.656C>T
  hgvsp: ENSP00000414132.2:p.Thr219Met
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.164C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.595C>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2120
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr192Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

5-125912862-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912862
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912862
    reference: chr 5
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.472C>T
  hgvsp: ENST00000510111.2:c.472C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.86C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.640C>T
  hgvsp: ENST00000447989.2:c.640C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.390C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.148C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*425C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.559C>T
  hgvsp: ENST00000553117.1:c.559C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.107C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.559C>T
  hgvsp: ENST00000409134.3:c.559C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.579C>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu187Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

5-125912868-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912868
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912868
    reference: chr 5
allele count: 12
allele frequency: 9.912276354264757e-5
allele num: 121062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.573G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.101G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.384G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.553G>A
  hgvsp: ENSP00000387123.3:p.Val185Ile
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*419G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.80G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.466G>A
  hgvsp: ENSP00000447388.1:p.Val156Ile
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.553G>A
  hgvsp: ENSP00000448593.1:p.Val185Ile
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.634G>A
  hgvsp: ENSP00000414132.2:p.Val212Ile
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.142G>A
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27126
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val185Ile
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: QD

5-125912869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912869
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912869
    reference: chr 5
allele count: 13
allele frequency: 1.073971878459429e-4
allele num: 121046
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.633C>T
  hgvsp: ENST00000447989.2:c.633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.552C>T
  hgvsp: ENST00000409134.3:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.465C>T
  hgvsp: ENST00000510111.2:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.552C>T
  hgvsp: ENST00000553117.1:c.552C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.572C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.100C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.79C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.383C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*418C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.141C>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12563
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 27113
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8809
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro184Pro
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD

5-125912871-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912871
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912871
    reference: chr 5
allele count: 1
allele frequency: 8.261458643138033e-6
allele num: 121044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.381C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.570C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*416C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.98C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.463C>G
  hgvsp: ENSP00000447388.1:p.Pro155Ala
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.550C>G
  hgvsp: ENSP00000448593.1:p.Pro184Ala
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.631C>G
  hgvsp: ENSP00000414132.2:p.Pro211Ala
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.550C>G
  hgvsp: ENSP00000387123.3:p.Pro184Ala
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.139C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.77C>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27091
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro184Ala
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

5-125912878-CTGCTCAATCAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912878
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912867
    reference: chr 5
allele count: 1
allele frequency: 8.271982794275789e-6
allele num: 120890
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsp: ENSP00000414132.2:p.Leu205ValfsTer46
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsp: ENSP00000387123.3:p.Leu178ValfsTer46
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsp: ENSP00000449318.1:p.Leu138ValfsTer?
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsp: ENSP00000447388.1:p.Leu149ValfsTer46
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsp: ENSP00000448593.1:p.Leu178ValfsTer46
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.59_69delCTGATTGAGCA
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.80_90delCTGATTGAGCA
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12630
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu178ValfsTer46
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: CTGCTCAATCAG
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD

5-125912883-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912883
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912883
    reference: chr 5
allele count: 1
allele frequency: 8.282533792737874e-6
allele num: 120736
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.558G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.418G>A
  hgvsp: ENSP00000449318.1:p.Glu140Lys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.619G>A
  hgvsp: ENSP00000414132.2:p.Glu207Lys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.538G>A
  hgvsp: ENSP00000448593.1:p.Glu180Lys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.369G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.451G>A
  hgvsp: ENSP00000447388.1:p.Glu151Lys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*404G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.538G>A
  hgvsp: ENSP00000387123.3:p.Glu180Lys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.65G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.86G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.127G>A
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26834
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12565
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu180Lys
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

5-125912885-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912885
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912885
    reference: chr 5
allele count: 1
allele frequency: 8.28349430923941e-6
allele num: 120722
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.617T>C
  hgvsp: ENSP00000414132.2:p.Ile206Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.416T>C
  hgvsp: ENSP00000449318.1:p.Ile139Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.556T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.536T>C
  hgvsp: ENSP00000387123.3:p.Ile179Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.63T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.367T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*402T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.536T>C
  hgvsp: ENSP00000448593.1:p.Ile179Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.449T>C
  hgvsp: ENSP00000447388.1:p.Ile150Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.84T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.125T>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8567
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12575
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile179Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

5-125912891-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912891
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912891
    reference: chr 5
allele count: 1
allele frequency: 8.303440945927993e-6
allele num: 120432
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.530C>A
  hgvsp: ENSP00000448593.1:p.Ala177Glu
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.57C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.550C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.361C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*396C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.410C>A
  hgvsp: ENSP00000449318.1:p.Ala137Glu
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.611C>A
  hgvsp: ENSP00000414132.2:p.Ala204Glu
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.443C>A
  hgvsp: ENSP00000447388.1:p.Ala148Glu
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.530C>A
  hgvsp: ENSP00000387123.3:p.Ala177Glu
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.78C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.119C>A
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8519
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala177Glu
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD

5-125912892-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912892
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912892
    reference: chr 5
allele count: 3
allele frequency: 2.491942718543377e-5
allele num: 120388
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.118G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*395G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.549G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.442G>C
  hgvsp: ENSP00000447388.1:p.Ala148Pro
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.529G>C
  hgvsp: ENSP00000448593.1:p.Ala177Pro
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.409G>C
  hgvsp: ENSP00000449318.1:p.Ala137Pro
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.610G>C
  hgvsp: ENSP00000414132.2:p.Ala204Pro
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.529G>C
  hgvsp: ENSP00000387123.3:p.Ala177Pro
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.360G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.56G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.77G>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8492
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala177Pro
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

5-125912893-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912893
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912893
    reference: chr 5
allele count: 9
allele frequency: 7.479804527775008e-5
allele num: 120324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.441T>C
  hgvsp: ENST00000510111.2:c.441T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.408T>C
  hgvsp: ENST00000509270.1:c.408T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.609T>C
  hgvsp: ENST00000447989.2:c.609T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.548T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.528T>C
  hgvsp: ENST00000553117.1:c.528T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*394T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.528T>C
  hgvsp: ENST00000409134.3:c.528T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.76T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.359T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.55T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.117T>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12357
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His176His
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-125912894-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912894
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912894
    reference: chr 5
allele count: 1
allele frequency: 8.315316813570598e-6
allele num: 120260
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.527A>G
  hgvsp: ENSP00000448593.1:p.His176Arg
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.407A>G
  hgvsp: ENSP00000449318.1:p.His136Arg
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*393A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.440A>G
  hgvsp: ENSP00000447388.1:p.His147Arg
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.608A>G
  hgvsp: ENSP00000414132.2:p.His203Arg
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.527A>G
  hgvsp: ENSP00000387123.3:p.His176Arg
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.547A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.358A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.75A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.116A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.54A>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1072
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26542
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8439
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His176Arg
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

5-125912896-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912896
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912896
    reference: chr 5
allele count: 1
allele frequency: 8.331389342486753e-6
allele num: 120028
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.606C>T
  hgvsp: ENST00000447989.2:c.606C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.525C>T
  hgvsp: ENST00000409134.3:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.545C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.525C>T
  hgvsp: ENST00000553117.1:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*391C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.114C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.52C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.356C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.405C>T
  hgvsp: ENST00000509270.1:c.405C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.438C>T
  hgvsp: ENST00000510111.2:c.438C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.73C>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26319
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12076
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly175Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/5-125912899-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912899
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912899
    reference: chr 5
allele count: 1
allele frequency: 8.340840089413805e-6
allele num: 119892
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.542T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.603T>G
  hgvsp: ENST00000447989.2:c.603T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.111T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*388T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.402T>G
  hgvsp: ENST00000509270.1:c.402T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.435T>G
  hgvsp: ENST00000510111.2:c.435T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.522T>G
  hgvsp: ENST00000553117.1:c.522T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.49T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.522T>G
  hgvsp: ENST00000409134.3:c.522T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.70T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.353T>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8248
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser174Ser
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

5-125912904-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912904
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912904
    reference: chr 5
allele count: 1
allele frequency: 8.372264362619514e-6
allele num: 119442
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.518-1G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.538-1G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.599-1G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.349-1G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.398-1G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.431-1G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-1G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.45-1G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-1G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*384-1G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.518-1G>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 2.75e1
  variant carriers: 0
hgvs: c.518-1G>C
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

5-125912906-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912906
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912906
    reference: chr 5
allele count: 1
allele frequency: 8.385181706887589e-6
allele num: 119258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.538-3C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.349-3C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-3C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.45-3C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.518-3C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.518-3C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-3C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.431-3C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.398-3C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*384-3C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.599-3C>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7996
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.518-3C>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

5-125912913-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912913
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912913
    reference: chr 5
allele count: 1
allele frequency: 8.457804015765346e-6
allele num: 118234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*384-10C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-10C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.599-10C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.538-10C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.398-10C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-10C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.518-10C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.518-10C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.349-10C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.45-10C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.431-10C>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23904
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10994
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7577
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/5-125912915-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912915
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912915
    reference: chr 5
allele count: 2413
allele frequency: 2.047344306804684e-2
allele num: 117860
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.349-12T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-12T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*384-12T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.398-12T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.45-12T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.431-12T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.599-12T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.538-12T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-12T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.518-12T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.518-12T>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 4.25e1
  variant carriers: 209
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 7.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 6.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 1776
  bin: 3.75e1
  variant carriers: 270
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 9.75e1
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 7356
  bin: 3.25e1
  variant carriers: 388
genotype depth: GenotypeDepth
  all individuals: 10545
  bin: 2.25e1
  variant carriers: 259
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 8.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 7.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 1.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 22987
  bin: 2.75e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 6.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.75e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 9.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 5.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 38
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQ

5-125912921-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912921
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912921
    reference: chr 5
allele count: 4
allele frequency: 3.413144017611823e-5
allele num: 117194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.349-18T>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-18T>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.398-18T>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.518-18T>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.431-18T>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.518-18T>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*384-18T>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.45-18T>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.538-18T>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.599-18T>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-18T>A
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9990
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6749
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1080
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD

5-125912924-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912924
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912924
    reference: chr 5
allele count: 3
allele frequency: 2.572457554450351e-5
allele num: 116620
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.431-21C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.518-21C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.45-21C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-21C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.398-21C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.518-21C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.538-21C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.349-21C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-21C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.599-21C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*384-21C>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10237
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/5-125912931-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912931
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912931
    reference: chr 5
allele count: 1
allele frequency: 8.627829928216456e-6
allele num: 115904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.349-28G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.431-28G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*384-28G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-28G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.518-28G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-28G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.538-28G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.45-28G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.599-28G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.398-28G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.518-28G>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8643
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS

5-125912933-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125912933
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125912933
    reference: chr 5
allele count: 1
allele frequency: 8.633043838596612e-6
allele num: 115834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*384-30C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.349-30C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000433026
  gene symbol: ALDH7A1
  hgvsc: ENST00000433026.1:n.45-30C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.518-30C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.398-30C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.599-30C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.538-30C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-30C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.518-30C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.431-30C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-30C>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7385
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14692
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3451
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

5-125918492-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918492
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918492
    reference: chr 5
allele count: 2
allele frequency: 1.656259834042764e-5
allele num: 120754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.397+51T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.598+51T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.537+51T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5589T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*383+51T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.430+51T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.517+51T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.517+51T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1132T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5589T>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9997
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

5-125918506-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918506
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918506
    reference: chr 5
allele count: 3
allele frequency: 2.48015873015873e-5
allele num: 120960
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5603C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.430+37C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.517+37C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.517+37C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1118C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.537+37C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.598+37C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.397+37C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*383+37C>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5603C>A
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1357
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11898
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2702
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7070
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4351
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-125918513-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918513
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918513
    reference: chr 5
allele count: 1
allele frequency: 8.261868173631421e-6
allele num: 121038
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5610T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1111T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.430+30T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.397+30T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.517+30T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5610T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.537+30T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.517+30T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.598+30T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*383+30T>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10705
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12159
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

5-125918516-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918516
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918516
    reference: chr 5
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.517+27G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.537+27G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5613G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.517+27G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.430+27G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1108G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*383+27G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5613G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.397+27G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.598+27G>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14043
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

5-125918516-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918516
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918516
    reference: chr 5
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.430+27G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.537+27G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5613G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1108G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.517+27G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5613G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*383+27G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.517+27G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.598+27G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.397+27G>A
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12200
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

5-125918518-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918518
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918518
    reference: chr 5
allele count: 1
allele frequency: 8.258729477057249e-6
allele num: 121084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.537+25G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1106G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5615G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.517+25G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.430+25G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.598+25G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*383+25G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.397+25G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.517+25G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5615G>A
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6588
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

5-125918523-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918523
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918523
    reference: chr 5
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.598+20A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5620A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.517+20A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*383+20A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1101A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.397+20A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.537+20A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.517+20A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.430+20A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5620A>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7200
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12357
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum

5-125918529-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918529
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918529
    reference: chr 5
allele count: 2
allele frequency: 1.649566164098842e-5
allele num: 121244
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.397+14T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.517+14T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1095T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.430+14T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.598+14T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*383+14T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5626T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5626T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.537+14T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.517+14T>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10982
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2709
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11042
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3384
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

5-125918538-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918538
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918538
    reference: chr 5
allele count: 1
allele frequency: 8.243615319934711e-6
allele num: 121306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.537+5G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5635G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5635G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.430+5G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.397+5G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1086G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.598+5G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.517+5G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.517+5G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*383+5G>A
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6729
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
hgvs: c.517+5G>A
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

5-125918539-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918539
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918539
    reference: chr 5
allele count: 1
allele frequency: 8.243071698237632e-6
allele num: 121314
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*383+4A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.598+4A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.397+4A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.517+4A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5636A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.517+4A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.430+4A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.537+4A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1085A>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5636A>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: c.517+4A>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

5-125918558-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918558
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918558
    reference: chr 5
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.502A>G
  hgvsp: ENSP00000448593.1:p.Ile168Val
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.522A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.583A>G
  hgvsp: ENSP00000414132.2:p.Ile195Val
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.382A>G
  hgvsp: ENSP00000449318.1:p.Ile128Val
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1066A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.415A>G
  hgvsp: ENSP00000447388.1:p.Ile139Val
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*368A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.502A>G
  hgvsp: ENSP00000387123.3:p.Ile168Val
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5655A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5655A>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7213
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14904
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ile168Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

5-125918565-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918565
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918565
    reference: chr 5
allele count: 1
allele frequency: 8.240490473993011e-6
allele num: 121352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5662A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.375A>G
  hgvsp: ENST00000509270.1:c.375A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.576A>G
  hgvsp: ENST00000447989.2:c.576A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1059A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*361A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.408A>G
  hgvsp: ENST00000510111.2:c.408A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.515A>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.495A>G
  hgvsp: ENST00000409134.3:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.495A>G
  hgvsp: ENST00000553117.1:c.495A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5662A>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1054
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12680
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7220
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4406
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1060
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14857
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly165Gly
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

5-125918566-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918566
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918566
    reference: chr 5
allele count: 53
allele frequency: 4.367531932426865e-4
allele num: 121350
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.407G>C
  hgvsp: ENSP00000447388.1:p.Gly136Ala
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.494G>C
  hgvsp: ENSP00000387123.3:p.Gly165Ala
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.494G>C
  hgvsp: ENSP00000448593.1:p.Gly165Ala
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5663G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.514G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.374G>C
  hgvsp: ENSP00000449318.1:p.Gly125Ala
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5663G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*360G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.575G>C
  hgvsp: ENSP00000414132.2:p.Gly192Ala
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1058G>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1038
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11121
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12689
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7217
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 9.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 3222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly165Ala
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD

5-125918569-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918569
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918569
    reference: chr 5
allele count: 3
allele frequency: 2.471984179301253e-5
allele num: 121360
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.491T>C
  hgvsp: ENSP00000387123.3:p.Ile164Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.404T>C
  hgvsp: ENSP00000447388.1:p.Ile135Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*357T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.511T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5666T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1055T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.491T>C
  hgvsp: ENSP00000448593.1:p.Ile164Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.572T>C
  hgvsp: ENSP00000414132.2:p.Ile191Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.371T>C
  hgvsp: ENSP00000449318.1:p.Ile124Thr
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5666T>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12702
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7219
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile164Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/5-125918574-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918574
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918574
    reference: chr 5
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5671G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.567G>T
  hgvsp: ENSP00000414132.2:p.Arg189Ser
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.399G>T
  hgvsp: ENSP00000447388.1:p.Arg133Ser
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.506G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.366G>T
  hgvsp: ENSP00000449318.1:p.Arg122Ser
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5671G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1050G>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.486G>T
  hgvsp: ENSP00000387123.3:p.Arg162Ser
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.486G>T
  hgvsp: ENSP00000448593.1:p.Arg162Ser
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*352G>T
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg162Ser
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

5-125918575-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918575
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918575
    reference: chr 5
allele count: 1
allele frequency: 8.239675686364985e-6
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1049G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.485G>A
  hgvsp: ENSP00000448593.1:p.Arg162Lys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.505G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.485G>A
  hgvsp: ENSP00000387123.3:p.Arg162Lys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5672G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.398G>A
  hgvsp: ENSP00000447388.1:p.Arg133Lys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.566G>A
  hgvsp: ENSP00000414132.2:p.Arg189Lys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.365G>A
  hgvsp: ENSP00000449318.1:p.Arg122Lys
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5672G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*351G>A
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14870
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg162Lys
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

5-125918610-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918610
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918610
    reference: chr 5
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.363T>C
  hgvsp: ENST00000510111.2:c.363T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*316T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.330T>C
  hgvsp: ENST00000509270.1:c.330T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5707T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.531T>C
  hgvsp: ENST00000447989.2:c.531T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.450T>C
  hgvsp: ENST00000409134.3:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1014T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5707T>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.450T>C
  hgvsp: ENST00000553117.1:c.450T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.470T>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10729
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7230
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12773
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Tyr150Tyr
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

5-125918618-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918618
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918618
    reference: chr 5
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.442C>T
  hgvsp: ENSP00000448593.1:p.Gln148Ter
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5715C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*308C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.322C>T
  hgvsp: ENSP00000449318.1:p.Gln108Ter
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.523C>T
  hgvsp: ENSP00000414132.2:p.Gln175Ter
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.442C>T
  hgvsp: ENSP00000387123.3:p.Gln148Ter
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.462C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1006C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5715C>T
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.355C>T
  hgvsp: ENSP00000447388.1:p.Gln119Ter
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln148Ter
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

5-125918618-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918618
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918618
    reference: chr 5
allele count: 9
allele frequency: 7.415585913682581e-5
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.355C>G
  hgvsp: ENSP00000447388.1:p.Gln119Glu
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+1006C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.442C>G
  hgvsp: ENSP00000448593.1:p.Gln148Glu
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.442C>G
  hgvsp: ENSP00000387123.3:p.Gln148Glu
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5715C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.523C>G
  hgvsp: ENSP00000414132.2:p.Gln175Glu
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5715C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.462C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*308C>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.322C>G
  hgvsp: ENSP00000449318.1:p.Gln108Glu
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4934
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln148Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/5-125918625-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918625
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918625
    reference: chr 5
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.435T>G
  hgvsp: ENST00000409134.3:c.435T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*301T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.455T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5722T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.348T>G
  hgvsp: ENST00000510111.2:c.348T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+999T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.516T>G
  hgvsp: ENST00000447989.2:c.516T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.435T>G
  hgvsp: ENST00000553117.1:c.435T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5722T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.315T>G
  hgvsp: ENST00000509270.1:c.315T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10711
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11189
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2718
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly145Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ

5-125918628-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918628
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918628
    reference: chr 5
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.345G>A
  hgvsp: ENST00000510111.2:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5725G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.513G>A
  hgvsp: ENST00000447989.2:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+996G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*298G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5725G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.312G>A
  hgvsp: ENST00000509270.1:c.312G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.432G>A
  hgvsp: ENST00000553117.1:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.452G>A
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.432G>A
  hgvsp: ENST00000409134.3:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1359
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12821
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14916
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val144Val
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-125918631-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918631
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918631
    reference: chr 5
allele count: 56
allele frequency: 4.632233729279026e-4
allele num: 120892
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.429T>G
  hgvsp: ENST00000409134.3:c.429T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.449T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5728T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5728T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.429T>G
  hgvsp: ENST00000553117.1:c.429T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.510T>G
  hgvsp: ENST00000447989.2:c.510T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.342T>G
  hgvsp: ENST00000510111.2:c.342T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.309T>G
  hgvsp: ENST00000509270.1:c.309T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*295T>G
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+993T>G
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4419
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7225
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 9.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 12776
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3391
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly143Gly
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD

5-125918637-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 125918637
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 125918637
    reference: chr 5
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000449318
  ensembl transcript: ENST00000509270
  gene symbol: ALDH7A1
  hgvsc: ENST00000509270.1:c.303G>C
  hgvsp: ENST00000509270.1:c.303G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000448593
  ensembl transcript: ENST00000553117
  gene symbol: ALDH7A1
  hgvsc: ENST00000553117.1:c.423G>C
  hgvsp: ENST00000553117.1:c.423G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000387123
  ensembl transcript: ENST00000409134
  gene symbol: ALDH7A1
  hgvsc: ENST00000409134.3:c.423G>C
  hgvsp: ENST00000409134.3:c.423G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000413020
  gene symbol: ALDH7A1
  hgvsc: ENST00000413020.1:n.443G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000511266
  gene symbol: ALDH7A1
  hgvsc: ENST00000511266.1:n.348+987G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000509459
  gene symbol: ALDH7A1
  hgvsc: ENST00000509459.1:n.66-5734G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000414132
  ensembl transcript: ENST00000447989
  gene symbol: ALDH7A1
  hgvsc: ENST00000447989.2:c.504G>C
  hgvsp: ENST00000447989.2:c.504G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000403929
  ensembl transcript: ENST00000458249
  gene symbol: ALDH7A1
  hgvsc: ENST00000458249.1:c.*289G>C
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164904
  ensembl protein: ENSP00000447388
  ensembl transcript: ENST00000510111
  gene symbol: ALDH7A1
  hgvsc: ENST00000510111.2:c.336G>C
  hgvsp: ENST00000510111.2:c.336G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/877
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000164904
  ensembl transcript: ENST00000503281
  gene symbol: ALDH7A1
  hgvsc: ENST00000503281.1:n.107-5734G>C
  variant of: http://identifiers.org/hgnc/877
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val141Val
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35378
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8960
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7751
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1240
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496537665997182e-5
allele num: 66718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.93e1

QD
type: SiteQuality
SIO_000300: 1.044e1

VQSLOD
type: SiteQuality
SIO_000300: 2.02e0

FS
type: SiteQuality
SIO_000300: 3.657e0

DP
type: SiteQuality
SIO_000300: 2.045631e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 236
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36373
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8958
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 624
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.652e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.82e0

QD
type: SiteQuality
SIO_000300: 1.307e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e0

FS
type: SiteQuality
SIO_000300: 7.526e0

MQRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 2.048503e6

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1997
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37202
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8954
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 2.052992e6

FS
type: SiteQuality
SIO_000300: 4.405e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.15e-1

QD
type: SiteQuality
SIO_000300: 1.29e1

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.818e-1

GenotypeQuality
all individuals: 8953
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37256
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7785
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

FS
type: SiteQuality
SIO_000300: 4.335e0

QD
type: SiteQuality
SIO_000300: 1.377e1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.991e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 2.053384e6

GenotypeQuality
all individuals: 2189
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8953
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2001
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7785
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.496133325340207e-5
allele num: 66724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.991e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

FS
type: SiteQuality
SIO_000300: 4.335e0

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

DP
type: SiteQuality
SIO_000300: 2.053384e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.377e1

MQRankSum
type: SiteQuality
SIO_000300: 8.82e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8952
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7800
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37310
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

DP
type: SiteQuality
SIO_000300: 2.054043e6

MQ
type: SiteQuality
SIO_000300: 5.962e1

VQSLOD
type: SiteQuality
SIO_000300: 3.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

QD
type: SiteQuality
SIO_000300: 1.371e1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1238
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7802
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8949
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.91e0

DP
type: SiteQuality
SIO_000300: 2.054262e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 8.120000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-2

QD
type: SiteQuality
SIO_000300: 1.254e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

MQ
type: SiteQuality
SIO_000300: 5.929e1

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37310
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.231e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.32e0

FS
type: SiteQuality
SIO_000300: 6.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

DP
type: SiteQuality
SIO_000300: 2.054309e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 13
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variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1232
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37345
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8947
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variant carriers: 1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.903e1

FS
type: SiteQuality
SIO_000300: 1.449e0

QD
type: SiteQuality
SIO_000300: 1.179e1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.119e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e0

DP
type: SiteQuality
SIO_000300: 2.054933e6

GenotypeQuality
all individuals: 616
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8946
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2192
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37379
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1231
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.641548565502938e-5
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.055047e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.939e1

MQRankSum
type: SiteQuality
SIO_000300: -2.82e-1

QD
type: SiteQuality
SIO_000300: 1.369e1

FS
type: SiteQuality
SIO_000300: 2.196e0

VQSLOD
type: SiteQuality
SIO_000300: 1.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.421e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2187
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8946
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.206e0

MQRankSum
type: SiteQuality
SIO_000300: 8.64e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.645e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.055186e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.33e-1

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 37385
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variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.219e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.804e0

DP
type: SiteQuality
SIO_000300: 2.055191e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.055194e6

VQSLOD
type: SiteQuality
SIO_000300: 5.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.16e-1

FS
type: SiteQuality
SIO_000300: 4.097e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.372e1

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 466
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GenotypeQuality
all individuals: 2181
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2009
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8945
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variant carriers: 5

GenotypeQuality
all individuals: 8
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 0
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European (Non-Finnish)
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allele frequency: 5.994664748373947e-5
allele num: 66726
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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VQSLOD
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InbreedingCoeff
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QD
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BaseQRankSum
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FS
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SIO_000300: 5.293e0

ClippingRankSum
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DP
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.616e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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VQSLOD
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QD
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FS
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MQ
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele frequency: 4.535833081342606e-4
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 47
allele frequency: 7.043731079339388e-4
allele num: 66726
num of homozygotes: 0

South Asian
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allele frequency: 7.26920281075842e-4
allele num: 16508
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ClippingRankSum
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SIO_000300: -2.3e-1

ReadPosRankSum
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FS
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MQRankSum
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QD
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQ
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.986e1

MQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

FS
type: SiteQuality
SIO_000300: 2.83e0

ClippingRankSum
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SIO_000300: -1.349e0

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.334e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.053977e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498711108446736e-5
allele num: 66724
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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VQSLOD
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SIO_000300: 1.63e0

MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

South Asian
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.997512064986062e-5
allele num: 66722
num of homozygotes: 0

QD
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ReadPosRankSum
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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VQSLOD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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Other
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66722
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African
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South Asian
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ClippingRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Finnish)
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European (Non-Finnish)
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African
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East Asian
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South Asian
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VQSLOD
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QD
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ClippingRankSum
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FS
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MQRankSum
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DP
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MQ
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

African
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allele frequency: 9.622786759045419e-5
allele num: 10392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66720
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Other
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ReadPosRankSum
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SIO_000300: 7.61e-1

FS
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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VQSLOD
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49667246237784e-5
allele num: 66716
num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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MQRankSum
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QD
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FS
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ClippingRankSum
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VQSLOD
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MQ
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49707690001499e-5
allele num: 66710
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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QD
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SIO_000300: 1.127e1

DP
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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SIO_000300: 5.932e1

ReadPosRankSum
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SIO_000300: 2.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
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SIO_000300: -2.227e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8648
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African
type: Population
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allele frequency: 9.626492106276473e-5
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11534
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ClippingRankSum
type: SiteQuality
SIO_000300: -7.54e-1

DP
type: SiteQuality
SIO_000300: 2.050771e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

FS
type: SiteQuality
SIO_000300: 8.147e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQ
type: SiteQuality
SIO_000300: 5.69e1

QD
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SIO_000300: 1.344e1

MQRankSum
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SIO_000300: 2.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.052e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16448
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.500240038406145e-5
allele num: 66656
num of homozygotes: 0

African
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allele count: 0
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Other
type: Population
allele count: 0
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FS
type: SiteQuality
SIO_000300: 2.675e0

BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.350864553314121e-4
allele num: 66624
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Other
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num of homozygotes: 0

East Asian
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Latino
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South Asian
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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FS
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele num: 11484
num of homozygotes: 0

African
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Other
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European (Finnish)
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East Asian
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European (Non-Finnish)
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allele num: 66614
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South Asian
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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QD
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MQRankSum
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MQ
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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Other
type: Population
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European (Non-Finnish)
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allele num: 66616
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Latino
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East Asian
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African
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InbreedingCoeff
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ReadPosRankSum
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MQ
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FS
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VQSLOD
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ClippingRankSum
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DP
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QD
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1858
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50253929140247e-5
allele num: 66554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.239e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: -3.905e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.78e-1

QD
type: SiteQuality
SIO_000300: 2.69e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.06e-2

DP
type: SiteQuality
SIO_000300: 2.037023e6

VQSLOD
type: SiteQuality
SIO_000300: -1.411e-1

GenotypeQuality
all individuals: 8858
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 36664
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503985561738607e-5
allele num: 66490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.39e0

MQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.634e0

DP
type: SiteQuality
SIO_000300: 2.032786e6

QD
type: SiteQuality
SIO_000300: 1.107e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e-1

GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8859
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1808
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66474
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.113216774666829e-5
allele num: 16358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.21e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 2.031287e6

MQ
type: SiteQuality
SIO_000300: 5.972e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

QD
type: SiteQuality
SIO_000300: 1.418e1

GenotypeQuality
all individuals: 960
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1931
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variant carriers: 0

GenotypeQuality
all individuals: 231
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 280
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1766
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.137228427642077e-5
allele num: 16294
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66344
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 2.024896e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.455e0

FS
type: SiteQuality
SIO_000300: 8.699999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.373e0

VQSLOD
type: SiteQuality
SIO_000300: -5.47e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.15e-1

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeQuality
all individuals: 10
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 192
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GenotypeQuality
all individuals: 1749
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variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 1908
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GenotypeQuality
all individuals: 423
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GenotypeQuality
all individuals: 7287
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variant carriers: 0

GenotypeQuality
all individuals: 577
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variant carriers: 0

GenotypeQuality
all individuals: 138
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variant carriers: 0

GenotypeQuality
all individuals: 191
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GenotypeQuality
all individuals: 8855
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 3
allele frequency: 2.914319020788809e-4
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e0

QD
type: SiteQuality
SIO_000300: 1.416e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

FS
type: SiteQuality
SIO_000300: 6.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

DP
type: SiteQuality
SIO_000300: 2.023623e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.357711803041274e-4
allele num: 66288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.731e0

DP
type: SiteQuality
SIO_000300: 2.021467e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.75e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.015e1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.019619e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.341e0

FS
type: SiteQuality
SIO_000300: 9.04e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.25e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 410
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variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.520681265206813e-4
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.433e0

VQSLOD
type: SiteQuality
SIO_000300: -2.047e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.62e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.418e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.301e0

MQ
type: SiteQuality
SIO_000300: 5.816e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.096e0

DP
type: SiteQuality
SIO_000300: 2.01357e6

QD
type: SiteQuality
SIO_000300: 1.235e1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7108
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16204
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513546238837597e-5
allele num: 66070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.007451e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.902e0

VQSLOD
type: SiteQuality
SIO_000300: 4.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.863e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.81e-1

QD
type: SiteQuality
SIO_000300: 1.318e1

MQ
type: SiteQuality
SIO_000300: 5.94e1

GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2258
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6935
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518833535844471e-5
allele num: 65840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.22e-1

FS
type: SiteQuality
SIO_000300: 1.444e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.54e-1

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: -1.119e0

QD
type: SiteQuality
SIO_000300: 1.723e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.063e0

MQRankSum
type: SiteQuality
SIO_000300: -1.452e0

DP
type: SiteQuality
SIO_000300: 1.992633e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

GenotypeDepth
all individuals: 615
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1847
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
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variant carriers: 0

GenotypeQuality
all individuals: 1705
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 139
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variant carriers: 0

GenotypeQuality
all individuals: 680
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 8834
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 337
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 559
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GenotypeQuality
all individuals: 6888
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variant carriers: 0

GenotypeQuality
all individuals: 268
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variant carriers: 0

GenotypeQuality
all individuals: 2508
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34688
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variant carriers: 0

GenotypeQuality
all individuals: 395
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variant carriers: 0

GenotypeQuality
all individuals: 551
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variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1578
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.208866261020738e-5
allele num: 16106
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65758
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11216
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.363e0

MQRankSum
type: SiteQuality
SIO_000300: 1.71e-1

QD
type: SiteQuality
SIO_000300: 2.52e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -7.52e-1

DP
type: SiteQuality
SIO_000300: 1.985875e6

FS
type: SiteQuality
SIO_000300: 3.249e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8827
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 512
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variant carriers: 0

GenotypeQuality
all individuals: 1215
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 377
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variant carriers: 0

GenotypeQuality
all individuals: 3998
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1434
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 32220
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variant carriers: 0

GenotypeQuality
all individuals: 432
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variant carriers: 0

GenotypeQuality
all individuals: 991
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6468
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 949
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1562
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 541
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.020386072523904e-5
allele num: 11086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10102
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.871e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.162e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.855e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.936e0

DP
type: SiteQuality
SIO_000300: 1.945362e6

GenotypeQuality
all individuals: 792
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 10340
bin: 9.75e1
variant carriers: 2349

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1355
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variant carriers: 2

GenotypeQuality
all individuals: 1485
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variant carriers: 1

GenotypeQuality
all individuals: 416
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GenotypeQuality
all individuals: 218
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variant carriers: 3

GenotypeQuality
all individuals: 610
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GenotypeQuality
all individuals: 5969
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variant carriers: 2

GenotypeQuality
all individuals: 1229
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variant carriers: 4

GenotypeQuality
all individuals: 296
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GenotypeQuality
all individuals: 30642
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GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 28
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GenotypeQuality
all individuals: 222
bin: 4.25e1
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GenotypeQuality
all individuals: 385
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variant carriers: 3

GenotypeQuality
all individuals: 1259
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 2

African
type: Population
allele count: 719
allele frequency: 7.141438220103298e-2
allele num: 10068
num of homozygotes: 16

South Asian
type: Population
allele count: 42
allele frequency: 2.638190954773869e-3
allele num: 15920
num of homozygotes: 0

Latino
type: Population
allele count: 227
allele frequency: 2.057650471356055e-2
allele num: 11032
num of homozygotes: 3

European (Finnish)
type: Population
allele count: 39
allele frequency: 6.012950971322849e-3
allele num: 6486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1360
allele frequency: 2.091985848331026e-2
allele num: 65010
num of homozygotes: 19

Other
type: Population
allele count: 25
allele frequency: 2.802690582959641e-2
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183151916706105e-4
allele num: 8452
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.77e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

MQRankSum
type: SiteQuality
SIO_000300: 1.45e-1

FS
type: SiteQuality
SIO_000300: 7.0e-1

DP
type: SiteQuality
SIO_000300: 1.939817e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.26e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e-1

QD
type: SiteQuality
SIO_000300: 1.564e1

MQ
type: SiteQuality
SIO_000300: 5.981e1

GenotypeQuality
all individuals: 1765
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
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variant carriers: 0

GenotypeQuality
all individuals: 2270
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 8319
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 45
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GenotypeQuality
all individuals: 5778
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 1321
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GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 222
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GenotypeQuality
all individuals: 1061
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variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9994
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.519843769686279e-4
allele num: 15874
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.855336e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.08e0

MQRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.95e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

FS
type: SiteQuality
SIO_000300: 1.821e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.84e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 426
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GenotypeQuality
all individuals: 78
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GenotypeQuality
all individuals: 483
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 25361
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variant carriers: 0

GenotypeQuality
all individuals: 296
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GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 8314
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 832
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GenotypeQuality
all individuals: 5153
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GenotypeQuality
all individuals: 1168
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55458135124211e-5
allele num: 64326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.265022137887413e-4
allele num: 15810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

FS
type: SiteQuality
SIO_000300: 1.778e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

QD
type: SiteQuality
SIO_000300: 1.289e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.794871e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 756
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4947
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3453
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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African
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South Asian
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European (Non-Finnish)
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Latino
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Other
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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QD
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MQ
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MQRankSum
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BaseQRankSum
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DP
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8288
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Latino
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South Asian
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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African
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DP
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InbreedingCoeff
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FS
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele num: 66364
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East Asian
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South Asian
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Latino
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European (Finnish)
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FS
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ReadPosRankSum
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QD
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DP
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 2.600554785020804e-4
allele num: 11536
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VQSLOD
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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QD
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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allele num: 66502
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East Asian
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Latino
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European (Finnish)
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Other
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MQ
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FS
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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QD
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MQ
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VQSLOD
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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South Asian
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East Asian
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DP
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VQSLOD
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FS
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MQRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Other
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Latino
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South Asian
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European (Non-Finnish)
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allele num: 66536
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
type: SiteQuality
SIO_000300: 1.654e1

DP
type: SiteQuality
SIO_000300: 2.395882e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501411326647048e-5
allele num: 66604
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10372
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.363e0

MQ
type: SiteQuality
SIO_000300: 5.644e1

FS
type: SiteQuality
SIO_000300: 4.425e0

MQRankSum
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 1.38e0

InbreedingCoeff
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SIO_000300: 0.0e0

DP
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SIO_000300: 2.39971e6

QD
type: SiteQuality
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ClippingRankSum
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SIO_000300: -1.668e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
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allele count: 2
allele frequency: 3.0016509079994e-5
allele num: 66630
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 4.98e0

QD
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SIO_000300: 1.578e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.84e-1

FS
type: SiteQuality
SIO_000300: 5.02e0

MQRankSum
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DP
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SIO_000300: 2.402386e6

MQ
type: SiteQuality
SIO_000300: 5.533e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.14e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.512e1

QD
type: SiteQuality
SIO_000300: 1.248e1

VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: 8.400000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.335e0

MQRankSum
type: SiteQuality
SIO_000300: 4.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 6.349e0

DP
type: SiteQuality
SIO_000300: 2.404808e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.504e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 2.405121e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.368e0

ClippingRankSum
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SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 4.522e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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ReadPosRankSum
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SIO_000300: -1.315e0

QD
type: SiteQuality
SIO_000300: 1.612e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Other
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MQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

ReadPosRankSum
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MQ
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InbreedingCoeff
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QD
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DP
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FS
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ClippingRankSum
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BaseQRankSum
type: SiteQuality
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VQSLOD
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele num: 906
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66698
num of homozygotes: 0

Latino
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MQ
type: SiteQuality
SIO_000300: 4.978e1

QD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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FS
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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Other
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East Asian
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allele frequency: 1.155802126675913e-4
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

South Asian
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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FS
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.497616263380409e-5
allele num: 66702
num of homozygotes: 0

East Asian
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Other
type: Population
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Latino
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South Asian
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ClippingRankSum
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FS
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BaseQRankSum
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.499115521842113e-5
allele num: 66706
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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East Asian
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FS
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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MQ
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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South Asian
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African
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Latino
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ReadPosRankSum
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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ClippingRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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Other
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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num of homozygotes: 0

Other
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Latino
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East Asian
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African
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European (Non-Finnish)
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allele frequency: 1.49902563333833e-5
allele num: 66710
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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MQ
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MQRankSum
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QD
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DP
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FS
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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Other
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African
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South Asian
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QD
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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Latino
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Other
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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DP
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ClippingRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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South Asian
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African
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QD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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DP
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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African
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num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.516530178950561e-4
allele num: 6594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 4.514265077645359e-4
allele num: 66456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.436115e6

MQRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.858e2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.675000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.946e0

FS
type: SiteQuality
SIO_000300: 1.95671e2

MQ
type: SiteQuality
SIO_000300: 3.73e1

QD
type: SiteQuality
SIO_000300: 1.16e0