9-117786295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786295
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786295
    reference: chr 9
allele count: 18
allele frequency: 1.483043865141878e-4
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5633G>A
  hgvsp: ENSP00000411406.2:p.Arg1878His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5363G>A
  hgvsp: ENSP00000442242.1:p.Arg1788His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6452G>A
  hgvsp: ENSP00000265131.4:p.Arg2151His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4541G>A
  hgvsp: ENSP00000443478.1:p.Arg1514His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4541G>A
  hgvsp: ENSP00000345861.3:p.Arg1514His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.5087G>A
  hgvsp: ENSP00000438152.1:p.Arg1696His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5906G>A
  hgvsp: ENSP00000339553.4:p.Arg1969His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4814G>A
  hgvsp: ENSP00000344555.3:p.Arg1605His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5360G>A
  hgvsp: ENSP00000344400.3:p.Arg1787His
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1598
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10798
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg2151His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-117786296-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786296
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786296
    reference: chr 9
allele count: 5
allele frequency: 4.119498409873614e-5
allele num: 121374
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4540C>T
  hgvsp: ENSP00000443478.1:p.Arg1514Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4813C>T
  hgvsp: ENSP00000344555.3:p.Arg1605Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4540C>T
  hgvsp: ENSP00000345861.3:p.Arg1514Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5632C>T
  hgvsp: ENSP00000411406.2:p.Arg1878Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6451C>T
  hgvsp: ENSP00000265131.4:p.Arg2151Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.5086C>T
  hgvsp: ENSP00000438152.1:p.Arg1696Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5905C>T
  hgvsp: ENSP00000339553.4:p.Arg1969Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5362C>T
  hgvsp: ENSP00000442242.1:p.Arg1788Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5359C>T
  hgvsp: ENSP00000344400.3:p.Arg1787Cys
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5310
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg2151Cys
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

9-117786307-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786307
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786307
    reference: chr 9
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5894G>A
  hgvsp: ENSP00000339553.4:p.Arg1965Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.5075G>A
  hgvsp: ENSP00000438152.1:p.Arg1692Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4802G>A
  hgvsp: ENSP00000344555.3:p.Arg1601Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5348G>A
  hgvsp: ENSP00000344400.3:p.Arg1783Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6440G>A
  hgvsp: ENSP00000265131.4:p.Arg2147Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5621G>A
  hgvsp: ENSP00000411406.2:p.Arg1874Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5351G>A
  hgvsp: ENSP00000442242.1:p.Arg1784Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4529G>A
  hgvsp: ENSP00000443478.1:p.Arg1510Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4529G>A
  hgvsp: ENSP00000345861.3:p.Arg1510Lys
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11023
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10801
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16199
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg2147Lys
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

9-117786333-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786333
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786333
    reference: chr 9
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6414G>C
  hgvsp: ENST00000350763.4:c.6414G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.5049G>C
  hgvsp: ENST00000535648.1:c.5049G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5325G>C
  hgvsp: ENST00000542877.1:c.5325G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4503G>C
  hgvsp: ENST00000345230.3:c.4503G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5595G>C
  hgvsp: ENST00000423613.2:c.5595G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5868G>C
  hgvsp: ENST00000341037.4:c.5868G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4776G>C
  hgvsp: ENST00000346706.3:c.4776G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4503G>C
  hgvsp: ENST00000537320.1:c.4503G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5322G>C
  hgvsp: ENST00000340094.3:c.5322G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2700
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu2138Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD

9-117786342-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786342
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786342
    reference: chr 9
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6405C>G
  hgvsp: ENSP00000265131.4:p.Asn2135Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5313C>G
  hgvsp: ENSP00000344400.3:p.Asn1771Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4767C>G
  hgvsp: ENSP00000344555.3:p.Asn1589Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5316C>G
  hgvsp: ENSP00000442242.1:p.Asn1772Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4494C>G
  hgvsp: ENSP00000345861.3:p.Asn1498Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5859C>G
  hgvsp: ENSP00000339553.4:p.Asn1953Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5586C>G
  hgvsp: ENSP00000411406.2:p.Asn1862Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4494C>G
  hgvsp: ENSP00000443478.1:p.Asn1498Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.5040C>G
  hgvsp: ENSP00000438152.1:p.Asn1680Lys
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8879
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5637
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asn2135Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

9-117786346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786346
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786346
    reference: chr 9
allele count: 1
allele frequency: 8.238318064983852e-6
allele num: 121384
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5312C>T
  hgvsp: ENSP00000442242.1:p.Thr1771Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4490C>T
  hgvsp: ENSP00000345861.3:p.Thr1497Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5309C>T
  hgvsp: ENSP00000344400.3:p.Thr1770Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4490C>T
  hgvsp: ENSP00000443478.1:p.Thr1497Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4763C>T
  hgvsp: ENSP00000344555.3:p.Thr1588Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.5036C>T
  hgvsp: ENSP00000438152.1:p.Thr1679Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5582C>T
  hgvsp: ENSP00000411406.2:p.Thr1861Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5855C>T
  hgvsp: ENSP00000339553.4:p.Thr1952Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6401C>T
  hgvsp: ENSP00000265131.4:p.Thr2134Ile
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4287
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr2134Ile
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

9-117786348-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786348
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786348
    reference: chr 9
allele count: 2
allele frequency: 1.64766361299677e-5
allele num: 121384
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.5034C>A
  hgvsp: ENST00000535648.1:c.5034C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4761C>A
  hgvsp: ENST00000346706.3:c.4761C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4488C>A
  hgvsp: ENST00000345230.3:c.4488C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6399C>A
  hgvsp: ENST00000350763.4:c.6399C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5580C>A
  hgvsp: ENST00000423613.2:c.5580C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5310C>A
  hgvsp: ENST00000542877.1:c.5310C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5307C>A
  hgvsp: ENST00000340094.3:c.5307C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4488C>A
  hgvsp: ENST00000537320.1:c.4488C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5853C>A
  hgvsp: ENST00000341037.4:c.5853C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8877
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11016
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4665
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile2133Ile
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

9-117786369-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786369
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786369
    reference: chr 9
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5286C>G
  hgvsp: ENSP00000344400.3:p.Asp1762Glu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5289C>G
  hgvsp: ENSP00000442242.1:p.Asp1763Glu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.5013C>G
  hgvsp: ENSP00000438152.1:p.Asp1671Glu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4740C>G
  hgvsp: ENSP00000344555.3:p.Asp1580Glu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4467C>G
  hgvsp: ENSP00000443478.1:p.Asp1489Glu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5832C>G
  hgvsp: ENSP00000339553.4:p.Asp1944Glu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5559C>G
  hgvsp: ENSP00000411406.2:p.Asp1853Glu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4467C>G
  hgvsp: ENSP00000345861.3:p.Asp1489Glu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6378C>G
  hgvsp: ENSP00000265131.4:p.Asp2126Glu
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3702
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5314
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11018
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp2126Glu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ

9-117786385-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786385
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786385
    reference: chr 9
allele count: 1
allele frequency: 8.241033755274261e-6
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5273C>A
  hgvsp: ENSP00000442242.1:p.Ser1758Tyr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4451C>A
  hgvsp: ENSP00000345861.3:p.Ser1484Tyr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6362C>A
  hgvsp: ENSP00000265131.4:p.Ser2121Tyr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5543C>A
  hgvsp: ENSP00000411406.2:p.Ser1848Tyr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5816C>A
  hgvsp: ENSP00000339553.4:p.Ser1939Tyr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4724C>A
  hgvsp: ENSP00000344555.3:p.Ser1575Tyr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4997C>A
  hgvsp: ENSP00000438152.1:p.Ser1666Tyr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5270C>A
  hgvsp: ENSP00000344400.3:p.Ser1757Tyr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4451C>A
  hgvsp: ENSP00000443478.1:p.Ser1484Tyr
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10811
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2311
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8869
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21042
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4281
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser2121Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

9-117786399-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786399
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786399
    reference: chr 9
allele count: 16
allele frequency: 1.319413520690053e-4
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6348C>T
  hgvsp: ENST00000350763.4:c.6348C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4437C>T
  hgvsp: ENST00000537320.1:c.4437C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5259C>T
  hgvsp: ENST00000542877.1:c.5259C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5529C>T
  hgvsp: ENST00000423613.2:c.5529C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5802C>T
  hgvsp: ENST00000341037.4:c.5802C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4983C>T
  hgvsp: ENST00000535648.1:c.4983C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4437C>T
  hgvsp: ENST00000345230.3:c.4437C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4710C>T
  hgvsp: ENST00000346706.3:c.4710C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5256C>T
  hgvsp: ENST00000340094.3:c.5256C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11008
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3701
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5201
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8870
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr2116Tyr
num of homozygotes: 1
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/9-117786404-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786404
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786404
    reference: chr 9
allele count: 1
allele frequency: 8.248102936324645e-6
allele num: 121240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5524G>T
  hgvsp: ENSP00000411406.2:p.Ala1842Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4432G>T
  hgvsp: ENSP00000345861.3:p.Ala1478Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5251G>T
  hgvsp: ENSP00000344400.3:p.Ala1751Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6343G>T
  hgvsp: ENSP00000265131.4:p.Ala2115Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4978G>T
  hgvsp: ENSP00000438152.1:p.Ala1660Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5797G>T
  hgvsp: ENSP00000339553.4:p.Ala1933Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4705G>T
  hgvsp: ENSP00000344555.3:p.Ala1569Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5254G>T
  hgvsp: ENSP00000442242.1:p.Ala1752Ser
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4432G>T
  hgvsp: ENSP00000443478.1:p.Ala1478Ser
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11005
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7463
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala2115Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

9-117786410-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786410
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786410
    reference: chr 9
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4972T>C
  hgvsp: ENSP00000438152.1:p.Ser1658Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5518T>C
  hgvsp: ENSP00000411406.2:p.Ser1840Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6337T>C
  hgvsp: ENSP00000265131.4:p.Ser2113Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4426T>C
  hgvsp: ENSP00000345861.3:p.Ser1476Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4699T>C
  hgvsp: ENSP00000344555.3:p.Ser1567Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5245T>C
  hgvsp: ENSP00000344400.3:p.Ser1749Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5248T>C
  hgvsp: ENSP00000442242.1:p.Ser1750Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5791T>C
  hgvsp: ENSP00000339553.4:p.Ser1931Pro
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4426T>C
  hgvsp: ENSP00000443478.1:p.Ser1476Pro
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7455
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8862
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10754
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser2113Pro
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

9-117786411-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786411
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786411
    reference: chr 9
allele count: 1
allele frequency: 8.253821519363466e-6
allele num: 121156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5247C>T
  hgvsp: ENST00000542877.1:c.5247C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5244C>T
  hgvsp: ENST00000340094.3:c.5244C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5790C>T
  hgvsp: ENST00000341037.4:c.5790C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4698C>T
  hgvsp: ENST00000346706.3:c.4698C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5517C>T
  hgvsp: ENST00000423613.2:c.5517C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4425C>T
  hgvsp: ENST00000345230.3:c.4425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6336C>T
  hgvsp: ENST00000350763.4:c.6336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4971C>T
  hgvsp: ENST00000535648.1:c.4971C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4425C>T
  hgvsp: ENST00000537320.1:c.4425C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10737
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7454
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2677
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp2112Asp
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum

9-117786419-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786419
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786419
    reference: chr 9
allele count: 1
allele frequency: 8.270067318347971e-6
allele num: 120918
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4421-4C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4694-4C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4967-4C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4421-4C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5243-4C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5513-4C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6332-4C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5786-4C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5240-4C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
hgvs: c.6332-4C>T
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

9-117786419-GGA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786419
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786417
    reference: chr 9
allele count: 1
allele frequency: 8.270067318347971e-6
allele num: 120918
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5786-6_5786-5delTC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4967-6_4967-5delTC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4421-6_4421-5delTC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4421-6_4421-5delTC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5240-6_5240-5delTC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5513-6_5513-5delTC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5243-6_5243-5delTC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6332-6_6332-5delTC
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4694-6_4694-5delTC
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4651
  bin: 7.75e1
  variant carriers: 0
hgvs: c.6332-6_6332-5delTC
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: GGA
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

9-117786424-GAC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786424
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786422
    reference: chr 9
allele count: 1
allele frequency: 8.278831029058698e-6
allele num: 120790
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5513-11_5513-10delGT
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4421-11_4421-10delGT
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5243-11_5243-10delGT
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6332-11_6332-10delGT
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5240-11_5240-10delGT
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4694-11_4694-10delGT
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5786-11_5786-10delGT
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4967-11_4967-10delGT
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4421-11_4421-10delGT
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3817
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: GAC
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

9-117786432-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786432
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786432
    reference: chr 9
allele count: 1
allele frequency: 8.297240337863626e-6
allele num: 120522
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4967-17T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5240-17T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4421-17T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6332-17T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5243-17T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5786-17T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5513-17T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4421-17T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4694-17T>C
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10873
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7445
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5410
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

9-117786467-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117786467
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117786467
    reference: chr 9
allele count: 1
allele frequency: 8.411560849231184e-6
allele num: 118884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5240-52G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4421-52G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5513-52G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6332-52G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4967-52G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5786-52G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4694-52G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5243-52G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4421-52G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7013
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5402
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2646
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7360
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8496
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3687
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1078
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-117788770-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788770
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788770
    reference: chr 9
allele count: 1
allele frequency: 8.331666999933347e-6
allele num: 120024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4693+43C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5512+43C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5242+43C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4420+43C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5239+43C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5785+43C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4966+43C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6331+43C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4420+43C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7657
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

9-117788772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788772
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788772
    reference: chr 9
allele count: 1
allele frequency: 8.330556481172942e-6
allele num: 120040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5242+41G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4966+41G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4420+41G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5512+41G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5239+41G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5785+41G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4693+41G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6331+41G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4420+41G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum

http://identifiers.org/exac.variant/9-117788776-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788776
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788776
    reference: chr 9
allele count: 1
allele frequency: 8.322237017310253e-6
allele num: 120160
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5239+37T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4420+37T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4966+37T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6331+37T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4693+37T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5785+37T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5242+37T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5512+37T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4420+37T>G
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20761
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2323
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1223
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

9-117788778-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788778
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788778
    reference: chr 9
allele count: 1
allele frequency: 8.321129010784183e-6
allele num: 120176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5242+35C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5512+35C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4420+35C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5239+35C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5785+35C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4693+35C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6331+35C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4420+35C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4966+35C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21006
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1056
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39590
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2376
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS

9-117788779-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788779
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788779
    reference: chr 9
allele count: 1
allele frequency: 8.318913882603488e-6
allele num: 120208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4966+34C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6331+34C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5512+34C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4420+34C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4693+34C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5785+34C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5239+34C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4420+34C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5242+34C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21113
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24790
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/9-117788793-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788793
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788793
    reference: chr 9
allele count: 2
allele frequency: 1.658787426391308e-5
allele num: 120570
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5242+20T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4420+20T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4420+20T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5785+20T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6331+20T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4693+20T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5512+20T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4966+20T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5239+20T>G
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25592
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7927
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

9-117788794-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788794
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788794
    reference: chr 9
allele count: 12
allele frequency: 9.951734089665124e-5
allele num: 120582
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5512+19G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5785+19G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4420+19G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5242+19G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4966+19G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4693+19G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6331+19G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4420+19G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5239+19G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21869
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25662
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

9-117788795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788795
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788795
    reference: chr 9
allele count: 1
allele frequency: 8.288025460814215e-6
allele num: 120656
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4693+18C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5242+18C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4420+18C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5239+18C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4420+18C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6331+18C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5512+18C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4966+18C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5785+18C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21974
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25743
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2249
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2401
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1233
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

9-117788801-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788801
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788801
    reference: chr 9
allele count: 1
allele frequency: 8.278831029058698e-6
allele num: 120790
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4693+12G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4420+12G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4966+12G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6331+12G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4420+12G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5239+12G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5242+12G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5785+12G>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5512+12G>C
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22061
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

9-117788820-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788820
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788820
    reference: chr 9
allele count: 2
allele frequency: 1.65188231990353e-5
allele num: 121074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4413G>A
  hgvsp: ENST00000537320.1:c.4413G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4686G>A
  hgvsp: ENST00000346706.3:c.4686G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5505G>A
  hgvsp: ENST00000423613.2:c.5505G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6324G>A
  hgvsp: ENST00000350763.4:c.6324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4959G>A
  hgvsp: ENST00000535648.1:c.4959G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5235G>A
  hgvsp: ENST00000542877.1:c.5235G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5232G>A
  hgvsp: ENST00000340094.3:c.5232G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4413G>A
  hgvsp: ENST00000345230.3:c.4413G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5778G>A
  hgvsp: ENST00000341037.4:c.5778G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42886
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly2108Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

9-117788829-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788829
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788829
    reference: chr 9
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4950G>A
  hgvsp: ENST00000535648.1:c.4950G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5769G>A
  hgvsp: ENST00000341037.4:c.5769G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4677G>A
  hgvsp: ENST00000346706.3:c.4677G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5223G>A
  hgvsp: ENST00000340094.3:c.5223G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6315G>A
  hgvsp: ENST00000350763.4:c.6315G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4404G>A
  hgvsp: ENST00000345230.3:c.4404G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5226G>A
  hgvsp: ENST00000542877.1:c.5226G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5496G>A
  hgvsp: ENST00000423613.2:c.5496G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4404G>A
  hgvsp: ENST00000537320.1:c.4404G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26564
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly2105Gly
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

9-117788835-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788835
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788835
    reference: chr 9
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6309G>A
  hgvsp: ENST00000350763.4:c.6309G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5220G>A
  hgvsp: ENST00000542877.1:c.5220G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5490G>A
  hgvsp: ENST00000423613.2:c.5490G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4671G>A
  hgvsp: ENST00000346706.3:c.4671G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4398G>A
  hgvsp: ENST00000537320.1:c.4398G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5217G>A
  hgvsp: ENST00000340094.3:c.5217G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4944G>A
  hgvsp: ENST00000535648.1:c.4944G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5763G>A
  hgvsp: ENST00000341037.4:c.5763G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4398G>A
  hgvsp: ENST00000345230.3:c.4398G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7493
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8095
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2286
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val2103Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

9-117788843-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788843
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788843
    reference: chr 9
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5212C>A
  hgvsp: ENSP00000442242.1:p.Leu1738Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5755C>A
  hgvsp: ENSP00000339553.4:p.Leu1919Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6301C>A
  hgvsp: ENSP00000265131.4:p.Leu2101Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4390C>A
  hgvsp: ENSP00000443478.1:p.Leu1464Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4663C>A
  hgvsp: ENSP00000344555.3:p.Leu1555Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5482C>A
  hgvsp: ENSP00000411406.2:p.Leu1828Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5209C>A
  hgvsp: ENSP00000344400.3:p.Leu1737Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4390C>A
  hgvsp: ENSP00000345861.3:p.Leu1464Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4936C>A
  hgvsp: ENSP00000438152.1:p.Leu1646Met
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu2101Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-117788843-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788843
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788843
    reference: chr 9
allele count: 1
allele frequency: 8.24783082049421e-6
allele num: 121244
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4390C>G
  hgvsp: ENSP00000345861.3:p.Leu1464Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5755C>G
  hgvsp: ENSP00000339553.4:p.Leu1919Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4936C>G
  hgvsp: ENSP00000438152.1:p.Leu1646Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5482C>G
  hgvsp: ENSP00000411406.2:p.Leu1828Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4663C>G
  hgvsp: ENSP00000344555.3:p.Leu1555Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6301C>G
  hgvsp: ENSP00000265131.4:p.Leu2101Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5212C>G
  hgvsp: ENSP00000442242.1:p.Leu1738Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4390C>G
  hgvsp: ENSP00000443478.1:p.Leu1464Val
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5209C>G
  hgvsp: ENSP00000344400.3:p.Leu1737Val
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu2101Val
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP

9-117788851-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788851
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788851
    reference: chr 9
allele count: 4
allele frequency: 3.299132328197684e-5
allele num: 121244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5747G>A
  hgvsp: ENSP00000339553.4:p.Arg1916His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5204G>A
  hgvsp: ENSP00000442242.1:p.Arg1735His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4382G>A
  hgvsp: ENSP00000443478.1:p.Arg1461His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4655G>A
  hgvsp: ENSP00000344555.3:p.Arg1552His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6293G>A
  hgvsp: ENSP00000265131.4:p.Arg2098His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5201G>A
  hgvsp: ENSP00000344400.3:p.Arg1734His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5474G>A
  hgvsp: ENSP00000411406.2:p.Arg1825His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4928G>A
  hgvsp: ENSP00000438152.1:p.Arg1643His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4382G>A
  hgvsp: ENSP00000345861.3:p.Arg1461His
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg2098His
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

9-117788852-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788852
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788852
    reference: chr 9
allele count: 4
allele frequency: 3.299132328197684e-5
allele num: 121244
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5200C>T
  hgvsp: ENSP00000344400.3:p.Arg1734Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4654C>T
  hgvsp: ENSP00000344555.3:p.Arg1552Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6292C>T
  hgvsp: ENSP00000265131.4:p.Arg2098Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5473C>T
  hgvsp: ENSP00000411406.2:p.Arg1825Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5746C>T
  hgvsp: ENSP00000339553.4:p.Arg1916Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4927C>T
  hgvsp: ENSP00000438152.1:p.Arg1643Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5203C>T
  hgvsp: ENSP00000442242.1:p.Arg1735Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4381C>T
  hgvsp: ENSP00000345861.3:p.Arg1461Cys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4381C>T
  hgvsp: ENSP00000443478.1:p.Arg1461Cys
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7518
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26716
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21882
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg2098Cys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

9-117788857-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788857
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788857
    reference: chr 9
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5198A>C
  hgvsp: ENSP00000442242.1:p.Lys1733Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5468A>C
  hgvsp: ENSP00000411406.2:p.Lys1823Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6287A>C
  hgvsp: ENSP00000265131.4:p.Lys2096Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4376A>C
  hgvsp: ENSP00000443478.1:p.Lys1459Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4376A>C
  hgvsp: ENSP00000345861.3:p.Lys1459Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4649A>C
  hgvsp: ENSP00000344555.3:p.Lys1550Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5195A>C
  hgvsp: ENSP00000344400.3:p.Lys1732Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4922A>C
  hgvsp: ENSP00000438152.1:p.Lys1641Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5741A>C
  hgvsp: ENSP00000339553.4:p.Lys1914Thr
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7511
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2312
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Lys2096Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

9-117788861-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788861
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788861
    reference: chr 9
allele count: 1
allele frequency: 8.249599894405122e-6
allele num: 121218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4645G>A
  hgvsp: ENSP00000344555.3:p.Ala1549Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5464G>A
  hgvsp: ENSP00000411406.2:p.Ala1822Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4372G>A
  hgvsp: ENSP00000443478.1:p.Ala1458Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5191G>A
  hgvsp: ENSP00000344400.3:p.Ala1731Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6283G>A
  hgvsp: ENSP00000265131.4:p.Ala2095Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5194G>A
  hgvsp: ENSP00000442242.1:p.Ala1732Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4918G>A
  hgvsp: ENSP00000438152.1:p.Ala1640Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5737G>A
  hgvsp: ENSP00000339553.4:p.Ala1913Thr
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4372G>A
  hgvsp: ENSP00000345861.3:p.Ala1458Thr
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1707
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43059
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala2095Thr
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

9-117788870-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788870
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788870
    reference: chr 9
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5728G>C
  hgvsp: ENSP00000339553.4:p.Val1910Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4363G>C
  hgvsp: ENSP00000345861.3:p.Val1455Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6274G>C
  hgvsp: ENSP00000265131.4:p.Val2092Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4636G>C
  hgvsp: ENSP00000344555.3:p.Val1546Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5455G>C
  hgvsp: ENSP00000411406.2:p.Val1819Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4363G>C
  hgvsp: ENSP00000443478.1:p.Val1455Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5185G>C
  hgvsp: ENSP00000442242.1:p.Val1729Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4909G>C
  hgvsp: ENSP00000438152.1:p.Val1637Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5182G>C
  hgvsp: ENSP00000344400.3:p.Val1728Leu
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26755
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val2092Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP

9-117788870-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788870
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788870
    reference: chr 9
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5728G>A
  hgvsp: ENSP00000339553.4:p.Val1910Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4909G>A
  hgvsp: ENSP00000438152.1:p.Val1637Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5182G>A
  hgvsp: ENSP00000344400.3:p.Val1728Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6274G>A
  hgvsp: ENSP00000265131.4:p.Val2092Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4363G>A
  hgvsp: ENSP00000443478.1:p.Val1455Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4636G>A
  hgvsp: ENSP00000344555.3:p.Val1546Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4363G>A
  hgvsp: ENSP00000345861.3:p.Val1455Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5185G>A
  hgvsp: ENSP00000442242.1:p.Val1729Met
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5455G>A
  hgvsp: ENSP00000411406.2:p.Val1819Met
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21689
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val2092Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

9-117788871-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788871
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788871
    reference: chr 9
allele count: 51
allele frequency: 4.208893143630542e-4
allele num: 121172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4908C>T
  hgvsp: ENST00000535648.1:c.4908C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5181C>T
  hgvsp: ENST00000340094.3:c.5181C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5454C>T
  hgvsp: ENST00000423613.2:c.5454C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5184C>T
  hgvsp: ENST00000542877.1:c.5184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5727C>T
  hgvsp: ENST00000341037.4:c.5727C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4362C>T
  hgvsp: ENST00000345230.3:c.4362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4362C>T
  hgvsp: ENST00000537320.1:c.4362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4635C>T
  hgvsp: ENST00000346706.3:c.4635C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6273C>T
  hgvsp: ENST00000350763.4:c.6273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 21679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7518
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 26738
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1220
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser2091Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ

9-117788873-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788873
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788873
    reference: chr 9
allele count: 2
allele frequency: 1.650464605786529e-5
allele num: 121178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4906A>G
  hgvsp: ENSP00000438152.1:p.Ser1636Gly
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4633A>G
  hgvsp: ENSP00000344555.3:p.Ser1545Gly
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5179A>G
  hgvsp: ENSP00000344400.3:p.Ser1727Gly
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5182A>G
  hgvsp: ENSP00000442242.1:p.Ser1728Gly
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5452A>G
  hgvsp: ENSP00000411406.2:p.Ser1818Gly
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4360A>G
  hgvsp: ENSP00000345861.3:p.Ser1454Gly
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6271A>G
  hgvsp: ENSP00000265131.4:p.Ser2091Gly
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4360A>G
  hgvsp: ENSP00000443478.1:p.Ser1454Gly
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5725A>G
  hgvsp: ENSP00000339553.4:p.Ser1909Gly
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26781
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21675
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser2091Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS

9-117788892-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788892
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788892
    reference: chr 9
allele count: 5
allele frequency: 4.132368012165691e-5
allele num: 120996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4887T>A
  hgvsp: ENSP00000438152.1:p.Phe1629Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4341T>A
  hgvsp: ENSP00000345861.3:p.Phe1447Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5163T>A
  hgvsp: ENSP00000442242.1:p.Phe1721Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5706T>A
  hgvsp: ENSP00000339553.4:p.Phe1902Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6252T>A
  hgvsp: ENSP00000265131.4:p.Phe2084Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4614T>A
  hgvsp: ENSP00000344555.3:p.Phe1538Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4341T>A
  hgvsp: ENSP00000443478.1:p.Phe1447Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5433T>A
  hgvsp: ENSP00000411406.2:p.Phe1811Leu
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5160T>A
  hgvsp: ENSP00000344400.3:p.Phe1720Leu
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42386
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe2084Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

9-117788900-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788900
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788900
    reference: chr 9
allele count: 3
allele frequency: 2.482539472377611e-5
allele num: 120844
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4333A>G
  hgvsp: ENSP00000443478.1:p.Thr1445Ala
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6244A>G
  hgvsp: ENSP00000265131.4:p.Thr2082Ala
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5425A>G
  hgvsp: ENSP00000411406.2:p.Thr1809Ala
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5155A>G
  hgvsp: ENSP00000442242.1:p.Thr1719Ala
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4606A>G
  hgvsp: ENSP00000344555.3:p.Thr1536Ala
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4879A>G
  hgvsp: ENSP00000438152.1:p.Thr1627Ala
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5698A>G
  hgvsp: ENSP00000339553.4:p.Thr1900Ala
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5152A>G
  hgvsp: ENSP00000344400.3:p.Thr1718Ala
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4333A>G
  hgvsp: ENSP00000345861.3:p.Thr1445Ala
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26640
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7905
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42037
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr2082Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP

9-117788907-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788907
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788907
    reference: chr 9
allele count: 1
allele frequency: 8.286651861182008e-6
allele num: 120676
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4599T>C
  hgvsp: ENST00000346706.3:c.4599T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5148T>C
  hgvsp: ENST00000542877.1:c.5148T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5691T>C
  hgvsp: ENST00000341037.4:c.5691T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4326T>C
  hgvsp: ENST00000537320.1:c.4326T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5418T>C
  hgvsp: ENST00000423613.2:c.5418T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5145T>C
  hgvsp: ENST00000340094.3:c.5145T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4326T>C
  hgvsp: ENST00000345230.3:c.4326T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4872T>C
  hgvsp: ENST00000535648.1:c.4872T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6237T>C
  hgvsp: ENST00000350763.4:c.6237T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7361
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7705
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 3.25e1
  variant carriers: 0
hgvs: p.His2079His
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

9-117788914-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788914
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788914
    reference: chr 9
allele count: 11
allele frequency: 9.129236795803871e-5
allele num: 120492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4865G>A
  hgvsp: ENSP00000438152.1:p.Arg1622Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4592G>A
  hgvsp: ENSP00000344555.3:p.Arg1531Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5138G>A
  hgvsp: ENSP00000344400.3:p.Arg1713Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4319G>A
  hgvsp: ENSP00000345861.3:p.Arg1440Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4319G>A
  hgvsp: ENSP00000443478.1:p.Arg1440Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5141G>A
  hgvsp: ENSP00000442242.1:p.Arg1714Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5411G>A
  hgvsp: ENSP00000411406.2:p.Arg1804Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6230G>A
  hgvsp: ENSP00000265131.4:p.Arg2077Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5684G>A
  hgvsp: ENSP00000339553.4:p.Arg1895Gln
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7223
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20804
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26207
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg2077Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

9-117788915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788915
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788915
    reference: chr 9
allele count: 1
allele frequency: 8.303165166561494e-6
allele num: 120436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5137C>T
  hgvsp: ENSP00000344400.3:p.Arg1713Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5683C>T
  hgvsp: ENSP00000339553.4:p.Arg1895Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6229C>T
  hgvsp: ENSP00000265131.4:p.Arg2077Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4318C>T
  hgvsp: ENSP00000443478.1:p.Arg1440Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5140C>T
  hgvsp: ENSP00000442242.1:p.Arg1714Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5410C>T
  hgvsp: ENSP00000411406.2:p.Arg1804Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4318C>T
  hgvsp: ENSP00000345861.3:p.Arg1440Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4864C>T
  hgvsp: ENSP00000438152.1:p.Arg1622Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4591C>T
  hgvsp: ENSP00000344555.3:p.Arg1531Trp
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg2077Trp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP

9-117788925-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788925
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788925
    reference: chr 9
allele count: 1
allele frequency: 8.315040244794785e-6
allele num: 120264
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4308G>A
  hgvsp: ENST00000537320.1:c.4308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5673G>A
  hgvsp: ENST00000341037.4:c.5673G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4854G>A
  hgvsp: ENST00000535648.1:c.4854G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6219G>A
  hgvsp: ENST00000350763.4:c.6219G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5127G>A
  hgvsp: ENST00000340094.3:c.5127G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5400G>A
  hgvsp: ENST00000423613.2:c.5400G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5130G>A
  hgvsp: ENST00000542877.1:c.5130G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4308G>A
  hgvsp: ENST00000345230.3:c.4308G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4581G>A
  hgvsp: ENST00000346706.3:c.4581G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21036
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6945
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg2073Arg
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-117788926-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788926
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788926
    reference: chr 9
allele count: 1
allele frequency: 8.319329129299013e-6
allele num: 120202
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4580G>A
  hgvsp: ENSP00000344555.3:p.Arg1527Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5129G>A
  hgvsp: ENSP00000442242.1:p.Arg1710Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5399G>A
  hgvsp: ENSP00000411406.2:p.Arg1800Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5672G>A
  hgvsp: ENSP00000339553.4:p.Arg1891Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6218G>A
  hgvsp: ENSP00000265131.4:p.Arg2073Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4307G>A
  hgvsp: ENSP00000345861.3:p.Arg1436Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4307G>A
  hgvsp: ENSP00000443478.1:p.Arg1436Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4853G>A
  hgvsp: ENSP00000438152.1:p.Arg1618Gln
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5126G>A
  hgvsp: ENSP00000344400.3:p.Arg1709Gln
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7285
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg2073Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP

9-117788927-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788927
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788927
    reference: chr 9
allele count: 1
allele frequency: 8.319605983460623e-6
allele num: 120198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5125C>T
  hgvsp: ENSP00000344400.3:p.Arg1709Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5128C>T
  hgvsp: ENSP00000442242.1:p.Arg1710Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6217C>T
  hgvsp: ENSP00000265131.4:p.Arg2073Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4306C>T
  hgvsp: ENSP00000345861.3:p.Arg1436Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4852C>T
  hgvsp: ENSP00000438152.1:p.Arg1618Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5398C>T
  hgvsp: ENSP00000411406.2:p.Arg1800Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4579C>T
  hgvsp: ENSP00000344555.3:p.Arg1527Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5671C>T
  hgvsp: ENSP00000339553.4:p.Arg1891Trp
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4306C>T
  hgvsp: ENSP00000443478.1:p.Arg1436Trp
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6901
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7276
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg2073Trp
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

9-117788931-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788931
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788931
    reference: chr 9
allele count: 1
allele frequency: 8.323068215867098e-6
allele num: 120148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4302G>A
  hgvsp: ENST00000537320.1:c.4302G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5121G>A
  hgvsp: ENST00000340094.3:c.5121G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4848G>A
  hgvsp: ENST00000535648.1:c.4848G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5394G>A
  hgvsp: ENST00000423613.2:c.5394G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5124G>A
  hgvsp: ENST00000542877.1:c.5124G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4575G>A
  hgvsp: ENST00000346706.3:c.4575G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5667G>A
  hgvsp: ENST00000341037.4:c.5667G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4302G>A
  hgvsp: ENST00000345230.3:c.4302G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6213G>A
  hgvsp: ENST00000350763.4:c.6213G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6833
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu2071Glu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

9-117788933-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788933
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788933
    reference: chr 9
allele count: 33
allele frequency: 2.748213661120272e-4
allele num: 120078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5119G>A
  hgvsp: ENSP00000344400.3:p.Glu1707Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4846G>A
  hgvsp: ENSP00000438152.1:p.Glu1616Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5665G>A
  hgvsp: ENSP00000339553.4:p.Glu1889Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5392G>A
  hgvsp: ENSP00000411406.2:p.Glu1798Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4573G>A
  hgvsp: ENSP00000344555.3:p.Glu1525Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4300G>A
  hgvsp: ENSP00000443478.1:p.Glu1434Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5122G>A
  hgvsp: ENSP00000442242.1:p.Glu1708Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6211G>A
  hgvsp: ENSP00000265131.4:p.Glu2071Lys
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4300G>A
  hgvsp: ENSP00000345861.3:p.Glu1434Lys
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21170
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25549
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6823
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1290
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Glu2071Lys
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

9-117788934-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788934
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788934
    reference: chr 9
allele count: 2
allele frequency: 1.665833749791771e-5
allele num: 120060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4299C>T
  hgvsp: ENST00000345230.3:c.4299C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4845C>T
  hgvsp: ENST00000535648.1:c.4845C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4572C>T
  hgvsp: ENST00000346706.3:c.4572C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5118C>T
  hgvsp: ENST00000340094.3:c.5118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5121C>T
  hgvsp: ENST00000542877.1:c.5121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5664C>T
  hgvsp: ENST00000341037.4:c.5664C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5391C>T
  hgvsp: ENST00000423613.2:c.5391C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6210C>T
  hgvsp: ENST00000350763.4:c.6210C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4299C>T
  hgvsp: ENST00000537320.1:c.4299C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2229
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1117
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Tyr2070Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/9-117788940-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788940
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788940
    reference: chr 9
allele count: 1
allele frequency: 8.343206127250579e-6
allele num: 119858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4293G>T
  hgvsp: ENST00000345230.3:c.4293G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4839G>T
  hgvsp: ENST00000535648.1:c.4839G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5112G>T
  hgvsp: ENST00000340094.3:c.5112G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4566G>T
  hgvsp: ENST00000346706.3:c.4566G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5385G>T
  hgvsp: ENST00000423613.2:c.5385G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5115G>T
  hgvsp: ENST00000542877.1:c.5115G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4293G>T
  hgvsp: ENST00000537320.1:c.4293G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5658G>T
  hgvsp: ENST00000341037.4:c.5658G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6204G>T
  hgvsp: ENST00000350763.4:c.6204G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly2068Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

9-117788946-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788946
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788946
    reference: chr 9
allele count: 25
allele frequency: 2.088659414841178e-4
allele num: 119694
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5652C>T
  hgvsp: ENST00000341037.4:c.5652C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4287C>T
  hgvsp: ENST00000345230.3:c.4287C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6198C>T
  hgvsp: ENST00000350763.4:c.6198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5379C>T
  hgvsp: ENST00000423613.2:c.5379C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4287C>T
  hgvsp: ENST00000537320.1:c.4287C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4833C>T
  hgvsp: ENST00000535648.1:c.4833C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5109C>T
  hgvsp: ENST00000542877.1:c.5109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4560C>T
  hgvsp: ENST00000346706.3:c.4560C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5106C>T
  hgvsp: ENST00000340094.3:c.5106C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25216
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21221
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala2066Ala
num of homozygotes: 1
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

9-117788950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788950
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788950
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 119532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4283C>T
  hgvsp: ENSP00000443478.1:p.Thr1428Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5648C>T
  hgvsp: ENSP00000339553.4:p.Thr1883Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5375C>T
  hgvsp: ENSP00000411406.2:p.Thr1792Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6194C>T
  hgvsp: ENSP00000265131.4:p.Thr2065Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4829C>T
  hgvsp: ENSP00000438152.1:p.Thr1610Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5105C>T
  hgvsp: ENSP00000442242.1:p.Thr1702Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4556C>T
  hgvsp: ENSP00000344555.3:p.Thr1519Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5102C>T
  hgvsp: ENSP00000344400.3:p.Thr1701Ile
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4283C>T
  hgvsp: ENSP00000345861.3:p.Thr1428Ile
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr2065Ile
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

9-117788958-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788958
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788958
    reference: chr 9
allele count: 1
allele frequency: 8.39898540256337e-6
allele num: 119062
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6186C>T
  hgvsp: ENST00000350763.4:c.6186C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5640C>T
  hgvsp: ENST00000341037.4:c.5640C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5094C>T
  hgvsp: ENST00000340094.3:c.5094C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4548C>T
  hgvsp: ENST00000346706.3:c.4548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5097C>T
  hgvsp: ENST00000542877.1:c.5097C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4821C>T
  hgvsp: ENST00000535648.1:c.4821C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4275C>T
  hgvsp: ENST00000345230.3:c.4275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5367C>T
  hgvsp: ENST00000423613.2:c.5367C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4275C>T
  hgvsp: ENST00000537320.1:c.4275C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24646
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn2062Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

9-117788967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788967
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788967
    reference: chr 9
allele count: 1
allele frequency: 8.452656669991378e-6
allele num: 118306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4266C>T
  hgvsp: ENST00000537320.1:c.4266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5088C>T
  hgvsp: ENST00000542877.1:c.5088C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6177C>T
  hgvsp: ENST00000350763.4:c.6177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5358C>T
  hgvsp: ENST00000423613.2:c.5358C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4266C>T
  hgvsp: ENST00000345230.3:c.4266C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5085C>T
  hgvsp: ENST00000340094.3:c.5085C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5631C>T
  hgvsp: ENST00000341037.4:c.5631C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4539C>T
  hgvsp: ENST00000346706.3:c.4539C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4812C>T
  hgvsp: ENST00000535648.1:c.4812C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1551
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23674
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Asp2059Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

9-117788979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788979
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788979
    reference: chr 9
allele count: 4
allele frequency: 3.407735559720566e-5
allele num: 117380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5078-5C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5081-5C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5351-5C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6170-5C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4532-5C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4259-5C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4259-5C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5624-5C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4805-5C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19513
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2199
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.25e1
  variant carriers: 0
hgvs: c.6170-5C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

9-117788985-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788985
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788985
    reference: chr 9
allele count: 12
allele frequency: 1.028471519909494e-4
allele num: 116678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4805-11G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5624-11G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5081-11G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6170-11G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5351-11G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4259-11G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5078-11G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4259-11G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4532-11G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21380
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18169
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5508
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 854
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5456
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

9-117788988-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117788988
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117788988
    reference: chr 9
allele count: 1
allele frequency: 8.605111436193099e-6
allele num: 116210
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6170-14C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4259-14C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5624-14C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5078-14C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4259-14C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5081-14C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4805-14C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5351-14C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4532-14C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20362
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8469
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1440
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

9-117789002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117789002
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117789002
    reference: chr 9
allele count: 1860
allele frequency: 1.619221728910943e-2
allele num: 114870
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5351-28C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4805-28C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4259-28C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4259-28C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5078-28C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5624-28C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4532-28C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6170-28C>T
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5081-28C>T
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 7076
  bin: 1.75e1
  variant carriers: 350
genotype depth: GenotypeDepth
  all individuals: 12625
  bin: 2.25e1
  variant carriers: 438
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 3.25e1
  variant carriers: 245
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 13718
  bin: 1.25e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 15899
  bin: 2.75e1
  variant carriers: 411
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 7.5e0
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 3.75e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 2.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9679
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 8.25e1
  variant carriers: 8
num of homozygotes: 50
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

9-117791605-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117791605
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117791605
    reference: chr 9
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4531+34C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5623+34C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5350+34C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4258+34C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4258+34C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5080+34C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4804+34C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6169+34C>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5077+34C>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3935
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8082
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7990
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

9-117791608-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117791608
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117791608
    reference: chr 9
allele count: 6
allele frequency: 4.95458298926507e-5
allele num: 121100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5077+31A>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4258+31A>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5080+31A>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5350+31A>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6169+31A>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4531+31A>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4804+31A>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5623+31A>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4258+31A>C
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7998
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4309
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4337
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-117791617-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117791617
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117791617
    reference: chr 9
allele count: 26946
allele frequency: 2.224295053820247e-1
allele num: 121144
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4531+22A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4258+22A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5350+22A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6169+22A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5623+22A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5080+22A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5077+22A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4804+22A>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4258+22A>G
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6100
  bin: 4.25e1
  variant carriers: 1316
genotype depth: GenotypeDepth
  all individuals: 6803
  bin: 3.75e1
  variant carriers: 832
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 7.25e1
  variant carriers: 1964
genotype depth: GenotypeDepth
  all individuals: 7122
  bin: 3.25e1
  variant carriers: 429
genotype depth: GenotypeDepth
  all individuals: 3736
  bin: 5.75e1
  variant carriers: 2407
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 2.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 7.75e1
  variant carriers: 1595
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 9.25e1
  variant carriers: 775
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 6.75e1
  variant carriers: 2160
genotype depth: GenotypeDepth
  all individuals: 5801
  bin: 2.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 8.75e1
  variant carriers: 1042
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 6.25e1
  variant carriers: 2378
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 9.75e1
  variant carriers: 3117
genotype depth: GenotypeDepth
  all individuals: 4235
  bin: 5.25e1
  variant carriers: 2134
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 8.25e1
  variant carriers: 1259
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 4.75e1
  variant carriers: 1733
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2963
  bin: 7.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 39581
  bin: 9.75e1
  variant carriers: 23398
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 6
num of homozygotes: 3398
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-117791618-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117791618
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117791618
    reference: chr 9
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5080+21T>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5623+21T>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4531+21T>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4258+21T>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4258+21T>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5350+21T>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6169+21T>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4804+21T>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5077+21T>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4362
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7337
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9527
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6075
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2532
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4475
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/9-117791622-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117791622
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117791622
    reference: chr 9
allele count: 2
allele frequency: 1.64923970049807e-5
allele num: 121268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4804+17T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5350+17T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4531+17T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5077+17T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6169+17T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5080+17T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5623+17T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4258+17T>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4258+17T>G
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3683
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6075
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8015
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4450
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum

9-117791627-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117791627
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117791627
    reference: chr 9
allele count: 1
allele frequency: 8.244430886935875e-6
allele num: 121294
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4258+12C>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5623+12C>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4531+12C>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5080+12C>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6169+12C>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4258+12C>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4804+12C>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5077+12C>G
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5350+12C>G
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7934
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6072
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4454
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4171
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8056
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-117791630-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117791630
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117791630
    reference: chr 9
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5080+9G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5350+9G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5623+9G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4258+9G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6169+9G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5077+9G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4258+9G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4804+9G>A
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4531+9G>A
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7932
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3685
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4454
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8093
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4471
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD

9-117791634-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117791634
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117791634
    reference: chr 9
allele count: 8
allele frequency: 6.593696426216537e-5
allele num: 121328
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4804+5T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5077+5T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5623+5T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5080+5T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4258+5T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6169+5T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5350+5T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4258+5T>C
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4531+5T>C
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6071
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3107
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7415
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7931
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4581
  bin: 6.75e1
  variant carriers: 0
hgvs: c.6169+5T>C
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

9-117791658-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117791658
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117791658
    reference: chr 9
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5061C>T
  hgvsp: ENST00000542877.1:c.5061C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5331C>T
  hgvsp: ENST00000423613.2:c.5331C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5058C>T
  hgvsp: ENST00000340094.3:c.5058C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5604C>T
  hgvsp: ENST00000341037.4:c.5604C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6150C>T
  hgvsp: ENST00000350763.4:c.6150C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4239C>T
  hgvsp: ENST00000537320.1:c.4239C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4512C>T
  hgvsp: ENST00000346706.3:c.4512C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.1837C>T
  hgvsp: ENST00000544972.1:c.1837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4785C>T
  hgvsp: ENST00000535648.1:c.4785C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4239C>T
  hgvsp: ENST00000345230.3:c.4239C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1136
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9549
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7927
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg2050Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-117791659-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 117791659
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 117791659
    reference: chr 9
allele count: 5
allele frequency: 4.119634176485128e-5
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000345861
  ensembl transcript: ENST00000345230
  gene symbol: TNC
  hgvsc: ENST00000345230.3:c.4238G>A
  hgvsp: ENSP00000345861.3:p.Arg1413His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344555
  ensembl transcript: ENST00000346706
  gene symbol: TNC
  hgvsc: ENST00000346706.3:c.4511G>A
  hgvsp: ENSP00000344555.3:p.Arg1504His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000442242
  ensembl transcript: ENST00000542877
  gene symbol: TNC
  hgvsc: ENST00000542877.1:c.5060G>A
  hgvsp: ENSP00000442242.1:p.Arg1687His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000445380
  ensembl transcript: ENST00000544972
  gene symbol: TNC
  hgvsc: ENST00000544972.1:c.1836G>A
  hgvsp: ENSP00000445380.1:p.Arg613His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000411406
  ensembl transcript: ENST00000423613
  gene symbol: TNC
  hgvsc: ENST00000423613.2:c.5330G>A
  hgvsp: ENSP00000411406.2:p.Arg1777His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000344400
  ensembl transcript: ENST00000340094
  gene symbol: TNC
  hgvsc: ENST00000340094.3:c.5057G>A
  hgvsp: ENSP00000344400.3:p.Arg1686His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000438152
  ensembl transcript: ENST00000535648
  gene symbol: TNC
  hgvsc: ENST00000535648.1:c.4784G>A
  hgvsp: ENSP00000438152.1:p.Arg1595His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000443478
  ensembl transcript: ENST00000537320
  gene symbol: TNC
  hgvsc: ENST00000537320.1:c.4238G>A
  hgvsp: ENSP00000443478.1:p.Arg1413His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000339553
  ensembl transcript: ENST00000341037
  gene symbol: TNC
  hgvsc: ENST00000341037.4:c.5603G>A
  hgvsp: ENSP00000339553.4:p.Arg1868His
  variant of: http://identifiers.org/hgnc/5318
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000041982
  ensembl protein: ENSP00000265131
  ensembl transcript: ENST00000350763
  gene symbol: TNC
  hgvsc: ENST00000350763.4:c.6149G>A
  hgvsp: ENSP00000265131.4:p.Arg2050His
  variant of: http://identifiers.org/hgnc/5318
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7928
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9139
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4359
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg2050His
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16177
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21065
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 5640
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4667
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3825
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.845548152634767e-4
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.804920238324044e-4
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 5.995563283170454e-5
allele num: 66716
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.97e-1

QD
type: SiteQuality
SIO_000300: 1.015e1

DP
type: SiteQuality
SIO_000300: 2.430478e6

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

FS
type: SiteQuality
SIO_000300: 5.151e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.78e-1

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21052
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2696
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5636
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4666
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16185
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.494229443328637e-5
allele num: 66718
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.86e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e0

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.091e0

QD
type: SiteQuality
SIO_000300: 1.466e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-1

DP
type: SiteQuality
SIO_000300: 2.429791e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2697
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4287
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5646
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3826
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21049
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2287
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4666
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.79e-1

DP
type: SiteQuality
SIO_000300: 2.42946e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.161e0

GenotypeQuality
all individuals: 4286
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4669
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16207
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21047
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5638
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3825
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2288
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498441620714457e-5
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

FS
type: SiteQuality
SIO_000300: 5.477e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.306e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

InbreedingCoeff
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DP
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele num: 11574
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East Asian
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South Asian
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European (Non-Finnish)
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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DP
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MQ
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Latino
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South Asian
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European (Non-Finnish)
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allele num: 66732
num of homozygotes: 0

European (Finnish)
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Other
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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MQ
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QD
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Finnish)
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Other
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Latino
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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MQ
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SIO_000300: 6.0e1

VQSLOD
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QD
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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African
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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FS
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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South Asian
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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FS
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QD
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MQ
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16470
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Other
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Latino
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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FS
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VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

Other
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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European (Non-Finnish)
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South Asian
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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QD
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MQ
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FS
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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East Asian
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European (Non-Finnish)
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Other
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South Asian
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MQ
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.5008254539997e-5
allele num: 66630
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East Asian
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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ReadPosRankSum
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MQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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QD
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VQSLOD
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FS
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

Other
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MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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allele frequency: 0.0e0
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Other
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.502087902184036e-5
allele num: 66574
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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BaseQRankSum
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DP
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FS
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 6.187353050365054e-5
allele num: 16162
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
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MQ
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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African
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South Asian
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66452
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InbreedingCoeff
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VQSLOD
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FS
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ClippingRankSum
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MQ
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MQRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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East Asian
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Other
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European (Finnish)
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Latino
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MQ
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QD
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DP
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BaseQRankSum
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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South Asian
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FS
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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Latino
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South Asian
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MQRankSum
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VQSLOD
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DP
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QD
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ReadPosRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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Other
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508113651444773e-5
allele num: 66308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.601113e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.59e0

GenotypeQuality
all individuals: 758
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
all individuals: 411
bin: 4.75e1
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GenotypeQuality
all individuals: 336
bin: 4.25e1
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GenotypeQuality
all individuals: 366
bin: 5.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2322
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2221
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508068164681044e-5
allele num: 66310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15924
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.831e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.7e-2

DP
type: SiteQuality
SIO_000300: 1.605276e6

MQRankSum
type: SiteQuality
SIO_000300: 1.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.8e0

VQSLOD
type: SiteQuality
SIO_000300: -3.35e-2

QD
type: SiteQuality
SIO_000300: 1.987e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7772
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 39896
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GenotypeQuality
all individuals: 294
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507613447911955e-5
allele num: 66330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15934
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.14e0

MQRankSum
type: SiteQuality
SIO_000300: 6.78e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.083e0

DP
type: SiteQuality
SIO_000300: 1.607101e6

FS
type: SiteQuality
SIO_000300: 2.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.583e-1

QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 19
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GenotypeQuality
all individuals: 2322
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 138
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2403
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.241002730206007e-4
allele num: 16116
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

QD
type: SiteQuality
SIO_000300: 1.464e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

FS
type: SiteQuality
SIO_000300: 6.821e0

VQSLOD
type: SiteQuality
SIO_000300: 4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.98e-1

DP
type: SiteQuality
SIO_000300: 1.627413e6

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 183
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2393
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variant carriers: 0

GenotypeQuality
all individuals: 2329
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variant carriers: 12

GenotypeQuality
all individuals: 265
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1234
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
all individuals: 7915
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.103277060575968e-4
allele num: 16112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.017752369489996e-5
allele num: 66470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.886836027713626e-4
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

QD
type: SiteQuality
SIO_000300: 1.099e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.247e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 8.59e-1

FS
type: SiteQuality
SIO_000300: 8.132999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-1

DP
type: SiteQuality
SIO_000300: 1.629413e6

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7952
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 2319
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variant carriers: 1

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 475
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GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 113
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GenotypeQuality
all individuals: 42021
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GenotypeQuality
all individuals: 228
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GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 442
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variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.185056902523504e-5
allele num: 16168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

DP
type: SiteQuality
SIO_000300: 1.631041e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.66e-1

QD
type: SiteQuality
SIO_000300: 9.27e0

MQ
type: SiteQuality
SIO_000300: 5.922e1

VQSLOD
type: SiteQuality
SIO_000300: 9.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.9e-1

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 87
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 10
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 1234
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GenotypeQuality
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GenotypeQuality
all individuals: 7977
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GenotypeQuality
all individuals: 435
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GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503397678753984e-5
allele num: 66516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -3.69e-1

DP
type: SiteQuality
SIO_000300: 1.636636e6

VQSLOD
type: SiteQuality
SIO_000300: -1.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e0

MQ
type: SiteQuality
SIO_000300: 5.691e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

QD
type: SiteQuality
SIO_000300: 9.09e0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 44
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 1231
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.098304671301378e-5
allele num: 16398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

FS
type: SiteQuality
SIO_000300: 3.867e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.297e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 1.644489e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.337e0

QD
type: SiteQuality
SIO_000300: 1.224e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 8086
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500555205426008e-5
allele num: 66642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.275e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.993e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

DP
type: SiteQuality
SIO_000300: 1.646426e6

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 2.094e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

VQSLOD
type: SiteQuality
SIO_000300: 7.59e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 43084
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66656
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.070171178827243e-5
allele num: 16474
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.415e0

FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
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SIO_000300: 1.049e1

MQRankSum
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SIO_000300: 2.27e-1

ClippingRankSum
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SIO_000300: -1.162e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

DP
type: SiteQuality
SIO_000300: 1.646946e6

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
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SIO_000300: 1.647817e6

VQSLOD
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SIO_000300: 2.17e-1

MQRankSum
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FS
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QD
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

BaseQRankSum
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SIO_000300: 1.17e0

ReadPosRankSum
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SIO_000300: 1.5e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.499925003749813e-5
allele num: 66670
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.183e0

ReadPosRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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SIO_000300: 6.0e1

QD
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DP
type: SiteQuality
SIO_000300: 1.647817e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499790029395885e-5
allele num: 66676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.596053997923157e-4
allele num: 11556
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.648091e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

FS
type: SiteQuality
SIO_000300: 1.961e0

QD
type: SiteQuality
SIO_000300: 1.1e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele count: 1
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allele num: 11556
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.999490086685263e-5
allele num: 66678
num of homozygotes: 0

South Asian
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allele count: 1
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allele num: 16480
num of homozygotes: 0

Other
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VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.166e0

BaseQRankSum
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DP
type: SiteQuality
SIO_000300: 1.648146e6

ClippingRankSum
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SIO_000300: 1.03e0

InbreedingCoeff
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QD
type: SiteQuality
SIO_000300: 1.101e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66676
num of homozygotes: 0

European (Finnish)
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African
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allele frequency: 0.0e0
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Other
type: Population
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South Asian
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

MQ
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VQSLOD
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QD
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MQRankSum
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DP
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ClippingRankSum
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ReadPosRankSum
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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ReadPosRankSum
type: SiteQuality
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QD
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VQSLOD
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MQ
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MQRankSum
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ClippingRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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Other
type: Population
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European (Non-Finnish)
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allele count: 0
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South Asian
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allele num: 16468
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East Asian
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
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QD
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ReadPosRankSum
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FS
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MQRankSum
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VQSLOD
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MQ
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500420117632937e-5
allele num: 66648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.506e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.97e-1

DP
type: SiteQuality
SIO_000300: 1.646951e6

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.516e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 51

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.031221582297666e-4
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 44
allele frequency: 6.602839220864972e-4
allele num: 66638
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.731002250302925e-4
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.884060757546626e-4
allele num: 10402
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.639e0

FS
type: SiteQuality
SIO_000300: 5.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

QD
type: SiteQuality
SIO_000300: 1.411e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

DP
type: SiteQuality
SIO_000300: 1.648796e6

VQSLOD
type: SiteQuality
SIO_000300: 4.15e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 2376
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214329083181542e-4
allele num: 16470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.646199e6

MQ
type: SiteQuality
SIO_000300: 5.977e1

MQRankSum
type: SiteQuality
SIO_000300: -3.33e-1

QD
type: SiteQuality
SIO_000300: 1.298e1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 2.764e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 498
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variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.594167679222357e-4
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16420
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.640872e6

MQRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 1.252e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.112e0

FS
type: SiteQuality
SIO_000300: 1.8e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.9e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 242
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 191
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GenotypeQuality
all individuals: 2320
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.83127823220608e-4
allele num: 16382
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

QD
type: SiteQuality
SIO_000300: 1.243e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.88e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e0

FS
type: SiteQuality
SIO_000300: 8.058999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -2.121e-1

DP
type: SiteQuality
SIO_000300: 1.636654e6

GenotypeQuality
all individuals: 41352
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 208
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GenotypeQuality
all individuals: 2272
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 1
allele frequency: 6.11545988258317e-5
allele num: 16352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

FS
type: SiteQuality
SIO_000300: 7.416e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -7.28e-1

DP
type: SiteQuality
SIO_000300: 1.630243e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.483e0

VQSLOD
type: SiteQuality
SIO_000300: -1.073e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

QD
type: SiteQuality
SIO_000300: 8.43e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.027000964320154e-5
allele num: 66368
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.779004454774356e-4
allele num: 10326
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.625253e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

FS
type: SiteQuality
SIO_000300: 4.117e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.44e-1

QD
type: SiteQuality
SIO_000300: 1.439e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.29e-1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507386192342478e-5
allele num: 66340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.79e-1

ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.984e1

FS
type: SiteQuality
SIO_000300: 1.2913e1

BaseQRankSum
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SIO_000300: -1.542e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-1

DP
type: SiteQuality
SIO_000300: 1.625319e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 480
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GenotypeQuality
all individuals: 2198
bin: 7.75e1
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GenotypeQuality
all individuals: 2006
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.713837574067619e-5
allele num: 11476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66284
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.19e1

MQ
type: SiteQuality
SIO_000300: 5.967e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

DP
type: SiteQuality
SIO_000300: 1.614719e6

FS
type: SiteQuality
SIO_000300: 5.297e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e0

GenotypeQuality
all individuals: 240
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169864295741694e-4
allele num: 8548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.35e-1

QD
type: SiteQuality
SIO_000300: 9.43e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.613961e6

GenotypeQuality
all individuals: 1970
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509251713000694e-5
allele num: 66258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.53e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

FS
type: SiteQuality
SIO_000300: 3.079e0

MQRankSum
type: SiteQuality
SIO_000300: 7.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.11e-1

DP
type: SiteQuality
SIO_000300: 1.612891e6

VQSLOD
type: SiteQuality
SIO_000300: -3.313e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

QD
type: SiteQuality
SIO_000300: 7.98e0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 470
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variant carriers: 0

GenotypeQuality
all individuals: 1950
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66242
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.726003490401397e-5
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.058e0

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

DP
type: SiteQuality
SIO_000300: 1.609244e6

MQ
type: SiteQuality
SIO_000300: 5.943e1

MQRankSum
type: SiteQuality
SIO_000300: 9.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

FS
type: SiteQuality
SIO_000300: 3.037e0

VQSLOD
type: SiteQuality
SIO_000300: 3.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.73e-1

GenotypeQuality
all individuals: 1125
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 32

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 392
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GenotypeQuality
all individuals: 41040
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.940993788819876e-4
allele num: 10304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.620087336244541e-4
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 28
allele frequency: 4.229351700803577e-4
allele num: 66204
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

QD
type: SiteQuality
SIO_000300: 1.106e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

FS
type: SiteQuality
SIO_000300: 5.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

DP
type: SiteQuality
SIO_000300: 1.608491e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.710623422023694e-5
allele num: 10298
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510710940568632e-5
allele num: 66194
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.608086e6

MQRankSum
type: SiteQuality
SIO_000300: 5.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e0

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.069e0

QD
type: SiteQuality
SIO_000300: 1.15e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.68e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.175889328063241e-5
allele num: 16192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.922e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.673e0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.565e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.054e0

DP
type: SiteQuality
SIO_000300: 1.601607e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10252
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.131221719457014e-3
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.756567425569177e-5
allele num: 11420
num of homozygotes: 0

South Asian
type: Population
allele count: 23
allele frequency: 1.422387136672851e-3
allele num: 16170
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66030
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.223e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.48e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1799
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65952
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6400
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.607e0

MQRankSum
type: SiteQuality
SIO_000300: 8.54e-1

DP
type: SiteQuality
SIO_000300: 1.591573e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.879e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.031e0

QD
type: SiteQuality
SIO_000300: 6.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.19e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 451
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521745746720638e-5
allele num: 65714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.142e1

DP
type: SiteQuality
SIO_000300: 1.577629e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.469e0

VQSLOD
type: SiteQuality
SIO_000300: -6.54e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.619e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 289
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65306
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183151916706105e-4
allele num: 8452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15914
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.168e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

DP
type: SiteQuality
SIO_000300: 1.552024e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.001e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.043e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

VQSLOD
type: SiteQuality
SIO_000300: -2.263e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1607
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variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10076
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64824
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.534854245880862e-4
allele num: 15780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.545e0

QD
type: SiteQuality
SIO_000300: 1.662e1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.18e-1

DP
type: SiteQuality
SIO_000300: 1.515002e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 64
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 591
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GenotypeQuality
all individuals: 1757
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10018
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.173708920187793e-3
allele num: 852
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11124
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.322433277230103e-3
allele num: 8318
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.461e0

VQSLOD
type: SiteQuality
SIO_000300: 2.24e0

MQRankSum
type: SiteQuality
SIO_000300: 2.95e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

DP
type: SiteQuality
SIO_000300: 1.481344e6

FS
type: SiteQuality
SIO_000300: 2.399e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.34e-1

QD
type: SiteQuality
SIO_000300: 1.015e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1504
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556565593674117e-5
allele num: 64244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9976
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.36e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

DP
type: SiteQuality
SIO_000300: 1.451002e6

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

VQSLOD
type: SiteQuality
SIO_000300: -1.565e0

FS
type: SiteQuality
SIO_000300: 7.315e0

MQ
type: SiteQuality
SIO_000300: 5.691e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.65e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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variant carriers: 1733

GenotypeQuality
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GenotypeQuality
all individuals: 3725
bin: 6.75e1
variant carriers: 6

African
type: Population
allele count: 26
allele frequency: 2.629981792433744e-3
allele num: 9886
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 9.456264775413711e-3
allele num: 846
num of homozygotes: 0

Latino
type: Population
allele count: 716
allele frequency: 6.562786434463795e-2
allele num: 10910
num of homozygotes: 21

South Asian
type: Population
allele count: 507
allele frequency: 3.293918918918919e-2
allele num: 15392
num of homozygotes: 8

East Asian
type: Population
allele count: 585
allele frequency: 7.172633643943109e-2
allele num: 8156
num of homozygotes: 21

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.63826998689384e-4
allele num: 6104
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.673965018245879e-4
allele num: 63576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.373e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

FS
type: SiteQuality
SIO_000300: 8.35e-1

DP
type: SiteQuality
SIO_000300: 1.339804e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.28e0

QD
type: SiteQuality
SIO_000300: 1.341e1

MQRankSum
type: SiteQuality
SIO_000300: 6.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.45e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4303
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167406023815083e-4
allele num: 8566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.235e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

DP
type: SiteQuality
SIO_000300: 2.547849e6

QD
type: SiteQuality
SIO_000300: 1.286e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

MQ
type: SiteQuality
SIO_000300: 5.921e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.97e-1

GenotypeQuality
all individuals: 2611
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 30606
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
all individuals: 4069
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003544182134919e-5
allele num: 66588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.846153846153846e-4
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.655e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e0

DP
type: SiteQuality
SIO_000300: 2.550185e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

GenotypeQuality
all individuals: 43
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 84
bin: 2.25e1
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GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 2569
bin: 9.25e1
variant carriers: 24

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1647
bin: 8.75e1
variant carriers: 16

GenotypeQuality
all individuals: 1786
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 5631
bin: 6.25e1
variant carriers: 13

GenotypeQuality
all individuals: 2926
bin: 8.25e1
variant carriers: 33

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 3158
bin: 6.75e1
variant carriers: 6

Latino
type: Population
allele count: 2103
allele frequency: 1.82204124068619e-1
allele num: 11542
num of homozygotes: 206

European (Non-Finnish)
type: Population
allele count: 18099
allele frequency: 2.716588616714697e-1
allele num: 66624
num of homozygotes: 2532

European (Finnish)
type: Population
allele count: 1772
allele frequency: 2.689738919247116e-1
allele num: 6588
num of homozygotes: 241

African
type: Population
allele count: 908
allele frequency: 8.732448547797654e-2
allele num: 10398
num of homozygotes: 52

South Asian
type: Population
allele count: 2454
allele frequency: 1.48691226369365e-1
allele num: 16504
num of homozygotes: 210

East Asian
type: Population
allele count: 1425
allele frequency: 1.660065237651445e-1
allele num: 8584
num of homozygotes: 136

Other
type: Population
allele count: 185
allele frequency: 2.046460176991151e-1
allele num: 904
num of homozygotes: 21

MQ
type: SiteQuality
SIO_000300: 5.976e1

VQSLOD
type: SiteQuality
SIO_000300: 5.17e0

MQRankSum
type: SiteQuality
SIO_000300: 6.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

DP
type: SiteQuality
SIO_000300: 3.177679e6

QD
type: SiteQuality
SIO_000300: 1.923e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.68e-2

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4562
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4454
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4172
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29827
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2445
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7947
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.24e-1

QD
type: SiteQuality
SIO_000300: 1.511e1

FS
type: SiteQuality
SIO_000300: 9.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

DP
type: SiteQuality
SIO_000300: 2.718043e6

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2447
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4473
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29826
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4168
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.437e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

QD
type: SiteQuality
SIO_000300: 1.493e1

DP
type: SiteQuality
SIO_000300: 2.718626e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.58e-1

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4472
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29824
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499520153550864e-5
allele num: 66688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.388e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.61e-1

DP
type: SiteQuality
SIO_000300: 2.719237e6

QD
type: SiteQuality
SIO_000300: 1.491e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.534e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4171
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4576
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2519
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29820
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.137e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 9.88e-1

DP
type: SiteQuality
SIO_000300: 2.719476e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.91e-1

QD
type: SiteQuality
SIO_000300: 1.419e1

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8139
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4471
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4173
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4452
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29821
bin: 9.75e1
variant carriers: 8

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.68787238131847e-4
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.405e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 2.720062e6

MQ
type: SiteQuality
SIO_000300: 5.975e1

MQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

FS
type: SiteQuality
SIO_000300: 7.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.018e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

GenotypeQuality
all individuals: 4172
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4591
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4470
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29815
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4456
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2522
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8196
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 2.720735e6

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

VQSLOD
type: SiteQuality
SIO_000300: -3.281e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

QD
type: SiteQuality
SIO_000300: 1.166e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.415e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.11e-1