5-140812607-A-ACGGACT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812607
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812613
    reference: chr 5
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: ACGGACT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2284_2289dupGACTCG
  hgvsp: ENSP00000252085.3:p.Asp762_Ser763dup
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6530
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp762_Ser763dup
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

5-140812609-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812609
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812609
    reference: chr 5
allele count: 2
allele frequency: 1.647419317638919e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61765G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9382G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22422G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2283G>A
  hgvsp: ENST00000252085.3:c.2283G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12768G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61765G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61765G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42761G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56535G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47719G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61765G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60233G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17431G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37805G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61765G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27666G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61765G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9937G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61765G>A
  variant of: http://identifiers.org/hgnc/8709
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr761Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP

5-140812609-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812609
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812609
    reference: chr 5
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61765G>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37805G>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61765G>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22422G>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61765G>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47719G>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17431G>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2283G>T
  hgvsp: ENST00000252085.3:c.2283G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56535G>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42761G>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9937G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9382G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61765G>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61765G>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61765G>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60233G>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61765G>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12768G>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27666G>T
  variant of: http://identifiers.org/hgnc/8707
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr761Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

5-140812615-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812615
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812615
    reference: chr 5
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47725G>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2289G>T
  hgvsp: ENST00000252085.3:c.2289G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61759G>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61759G>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61759G>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61759G>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22428G>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9388G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12774G>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17437G>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61759G>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61759G>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37811G>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56541G>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60239G>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9943G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61759G>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42767G>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27672G>T
  variant of: http://identifiers.org/hgnc/8707
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ser763Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

5-140812618-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812618
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812618
    reference: chr 5
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37814G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9391G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56544G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61756G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27675G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61756G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47728G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61756G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17440G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61756G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60242G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2292G>A
  hgvsp: ENST00000252085.3:c.2292G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9946G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61756G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61756G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42770G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22431G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12777G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61756G>A
  variant of: http://identifiers.org/hgnc/8709
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg764Arg
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS

http://identifiers.org/exac.variant/5-140812619-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812619
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812619
    reference: chr 5
allele count: 4
allele frequency: 3.29489291598023e-5
allele num: 121400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9947A>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47729A>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61755A>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61755A>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61755A>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61755A>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22432A>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37815A>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61755A>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2293A>C
  hgvsp: ENSP00000252085.3:p.Lys765Gln
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61755A>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60243A>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17441A>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9392A>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12778A>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42771A>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61755A>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27676A>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56545A>C
  variant of: http://identifiers.org/hgnc/8704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys765Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ

5-140812619-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812619
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812619
    reference: chr 5
allele count: 2
allele frequency: 1.647446457990115e-5
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12778A>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61755A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42771A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2293A>G
  hgvsp: ENSP00000252085.3:p.Lys765Glu
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61755A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61755A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27676A>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61755A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9947A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61755A>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17441A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22432A>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37815A>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9392A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61755A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61755A>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47729A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60243A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56545A>G
  variant of: http://identifiers.org/hgnc/8704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys765Glu
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

5-140812626-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812626
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812626
    reference: chr 5
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42778A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2300A>G
  hgvsp: ENSP00000252085.3:p.His767Arg
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27683A>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61748A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47736A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61748A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9954A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9399A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61748A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61748A>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17448A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37822A>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56552A>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61748A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61748A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60250A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61748A>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12785A>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22439A>G
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His767Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

5-140812636-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812636
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812636
    reference: chr 5
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42788C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27693C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60260C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61738C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17458C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61738C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12795C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37832C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61738C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61738C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2310C>T
  hgvsp: ENST00000252085.3:c.2310C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61738C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47746C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9964C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61738C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61738C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22449C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9409C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56562C>T
  variant of: http://identifiers.org/hgnc/8704
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe770Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

5-140812650-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812650
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812650
    reference: chr 5
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2324A>G
  hgvsp: ENSP00000252085.3:p.Tyr775Cys
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17472A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61724A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27707A>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56576A>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61724A>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37846A>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12809A>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47760A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61724A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60274A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9423A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61724A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61724A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22463A>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42802A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61724A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61724A>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9978A>G
  variant of: http://identifiers.org/hgnc/8698
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr775Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/5-140812653-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812653
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812653
    reference: chr 5
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42805C>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2327C>A
  hgvsp: ENSP00000252085.3:p.Ala776Glu
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17475C>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12812C>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61721C>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47763C>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61721C>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61721C>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60277C>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37849C>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9981C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61721C>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61721C>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56579C>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27710C>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9426C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22466C>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61721C>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61721C>A
  variant of: http://identifiers.org/hgnc/8702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala776Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/5-140812654-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812654
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812654
    reference: chr 5
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61720A>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9982A>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47764A>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61720A>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60278A>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61720A>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61720A>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61720A>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61720A>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56580A>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2328A>C
  hgvsp: ENST00000252085.3:c.2328A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22467A>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37850A>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42806A>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9427A>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17476A>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61720A>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27711A>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12813A>C
  variant of: http://identifiers.org/hgnc/8714
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6564
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala776Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

5-140812664-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812664
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812664
    reference: chr 5
allele count: 4
allele frequency: 3.295381522795802e-5
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37860G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2338G>A
  hgvsp: ENSP00000252085.3:p.Val780Ile
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61710G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27721G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61710G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61710G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61710G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56590G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47774G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42816G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12823G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17486G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9437G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61710G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60288G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61710G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61710G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9992G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22477G>A
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7511
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val780Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-140812670-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812670
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812670
    reference: chr 5
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37866C>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47780C>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61704C>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2344C>A
  hgvsp: ENSP00000252085.3:p.Gln782Lys
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61704C>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61704C>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42822C>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61704C>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61704C>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61704C>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27727C>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9998C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12829C>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9443C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61704C>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56596C>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17492C>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60294C>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22483C>A
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2127
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln782Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

5-140812690-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812690
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812690
    reference: chr 5
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61684C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9463C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61684C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61684C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17512C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10018C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61684C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37886C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47800C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60314C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22503C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12849C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2364C>T
  hgvsp: ENST00000252085.3:c.2364C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56616C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61684C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61684C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42842C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61684C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27747C>T
  variant of: http://identifiers.org/hgnc/8707
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser788Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

5-140812695-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812695
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812695
    reference: chr 5
allele count: 2
allele frequency: 1.648233917357551e-5
allele num: 121342
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61679C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37891C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61679C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42847C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61679C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10023C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61679C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56621C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12854C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2369C>T
  hgvsp: ENSP00000252085.3:p.Pro790Leu
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17517C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47805C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60319C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61679C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22508C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27752C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61679C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9468C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61679C>T
  variant of: http://identifiers.org/hgnc/8703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7417
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro790Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/5-140812716-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812716
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812716
    reference: chr 5
allele count: 2
allele frequency: 1.649947201689546e-5
allele num: 121216
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56642C>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10044C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61658C>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61658C>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22529C>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61658C>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60340C>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37912C>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42868C>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47826C>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27773C>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2390C>A
  hgvsp: ENSP00000252085.3:p.Ser797Ter
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61658C>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61658C>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9489C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61658C>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17538C>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12875C>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61658C>A
  variant of: http://identifiers.org/hgnc/8709
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7413
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser797Ter
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum

5-140812739-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812739
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812739
    reference: chr 5
allele count: 98
allele frequency: 8.109763161814601e-4
allele num: 120842
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61635G>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61635G>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9512G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42891G>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61635G>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37935G>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27796G>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2413G>C
  hgvsp: ENSP00000252085.3:p.Gly805Arg
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56665G>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47849G>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61635G>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61635G>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17561G>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61635G>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61635G>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22552G>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60363G>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12898G>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10067G>C
  variant of: http://identifiers.org/hgnc/8698
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10298
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
hgvs: p.Gly805Arg
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

5-140812740-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812740
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812740
    reference: chr 5
allele count: 1
allele frequency: 8.280613427842734e-6
allele num: 120764
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9513G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37936G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42892G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27797G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2414G>A
  hgvsp: ENSP00000252085.3:p.Gly805Glu
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61634G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61634G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61634G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17562G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61634G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61634G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22553G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60364G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56666G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47850G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61634G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61634G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12899G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10068G>A
  variant of: http://identifiers.org/hgnc/8698
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10111
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly805Glu
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

5-140812746-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812746
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812746
    reference: chr 5
allele count: 1
allele frequency: 8.295450774795103e-6
allele num: 120548
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17568T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61628T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47856T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37942T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42898T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9519T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61628T>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61628T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60370T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2420T>C
  hgvsp: ENSP00000252085.3:p.Ile807Thr
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61628T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10074T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12905T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27803T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61628T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61628T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56672T>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22559T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61628T>C
  variant of: http://identifiers.org/hgnc/8703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile807Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

5-140812748-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812748
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812748
    reference: chr 5
allele count: 4
allele frequency: 3.318455590768056e-5
allele num: 120538
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2422G>T
  hgvsp: ENSP00000252085.3:p.Glu808Ter
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61626G>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22561G>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61626G>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61626G>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47858G>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61626G>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61626G>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56674G>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37944G>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60372G>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27805G>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61626G>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17570G>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12907G>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61626G>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10076G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42900G>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9521G>T
  variant of: http://identifiers.org/hgnc/8698
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu808Ter
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

5-140812753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812753
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812753
    reference: chr 5
allele count: 4
allele frequency: 3.326016097917914e-5
allele num: 120264
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61621G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+3G>A
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17575G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47863G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56679G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61621G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27810G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9526G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61621G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22566G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61621G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61621G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61621G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60377G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10081G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42905G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61621G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37949G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12912G>A
  variant of: http://identifiers.org/hgnc/8714
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6515
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2424+3G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

5-140812759-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812759
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812759
    reference: chr 5
allele count: 1
allele frequency: 8.357430591538938e-6
allele num: 119654
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37955A>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61615A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56685A>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61615A>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61615A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61615A>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61615A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47869A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9532A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61615A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42911A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61615A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22572A>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17581A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60383A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+9A>G
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27816A>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10087A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12918A>G
  variant of: http://identifiers.org/hgnc/8714
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

5-140812762-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812762
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812762
    reference: chr 5
allele count: 1
allele frequency: 8.414391976035812e-6
allele num: 118844
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61612T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60386T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61612T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61612T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61612T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61612T>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61612T>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56688T>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10090T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27819T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+12T>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17584T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47872T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9535T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61612T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42914T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12921T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22575T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37958T>C
  variant of: http://identifiers.org/hgnc/8706
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/5-140812763-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812763
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812763
    reference: chr 5
allele count: 1
allele frequency: 8.42133629764371e-6
allele num: 118746
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61611C>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61611C>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56689C>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9536C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42915C>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27820C>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17585C>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47873C>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+13C>A
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12922C>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61611C>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61611C>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61611C>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61611C>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60387C>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22576C>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61611C>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37959C>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10091C>A
  variant of: http://identifiers.org/hgnc/8698
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7239
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

5-140812765-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812765
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812765
    reference: chr 5
allele count: 3
allele frequency: 2.532970837062429e-5
allele num: 118438
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61609A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61609A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61609A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47875A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22578A>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61609A>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61609A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42917A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9538A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60389A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61609A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56691A>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17587A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+15A>G
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12924A>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10093A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27822A>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61609A>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37961A>G
  variant of: http://identifiers.org/hgnc/8706
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5115
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

5-140812768-CTTCT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812768
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812764
    reference: chr 5
allele count: 8
allele frequency: 6.821864074358318e-5
allele num: 117270
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42927_2397+42930delCTTT
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12934_2415+12937delCTTT
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37971_2424+37974delCTTT
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10103_1878+10106delCTTT
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61599_2410-61596delCTTT
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+25_2424+28delCTTT
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47885_2424+47888delCTTT
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61599_2422-61596delCTTT
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61599_2422-61596delCTTT
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17597_2436+17600delCTTT
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60399_2415+60402delCTTT
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22588_2418+22591delCTTT
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61599_2425-61596delCTTT
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61599_2422-61596delCTTT
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61599_2422-61596delCTTT
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9548_2433+9551delCTTT
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61599_2425-61596delCTTT
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27832_2424+27835delCTTT
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56701_2424+56704delCTTT
  variant of: http://identifiers.org/hgnc/8704
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: CTTCT
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-140812774-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812774
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812773
    reference: chr 5
allele count: 1
allele frequency: 8.761016978850905e-6
allele num: 114142
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61599delC
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10103delC
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37971delC
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61599delC
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61599delC
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61599delC
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22588delC
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12934delC
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61599delC
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61599delC
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9548delC
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27832delC
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+25delC
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60399delC
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56701delC
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61599delC
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17597delC
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47885delC
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42927delC
  variant of: http://identifiers.org/hgnc/8711
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: TC
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-140812775-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812775
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812776
    reference: chr 5
allele count: 1228
allele frequency: 1.632110579479e-2
allele num: 75240
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47897dupT
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10115dupT
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9560dupT
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37983dupT
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61587dupT
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+37dupT
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61587dupT
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22600dupT
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61587dupT
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27844dupT
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61587dupT
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60411dupT
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61587dupT
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61587dupT
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61587dupT
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42939dupT
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12946dupT
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17609dupT
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56713dupT
  variant of: http://identifiers.org/hgnc/8704
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 8650
  bin: 3.25e1
  variant carriers: 429
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 1.75e1
  variant carriers: 228
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 4.75e1
  variant carriers: 51
genotype quality: GenotypeQuality
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD

5-140812775-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812775
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812774
    reference: chr 5
allele count: 10064
allele frequency: 1.337586390217969e-1
allele num: 75240
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42939delT
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56713delT
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61587delT
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17609delT
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61587delT
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10115delT
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27844delT
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37983delT
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61587delT
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61587delT
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60411delT
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22600delT
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61587delT
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9560delT
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61587delT
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61587delT
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47897delT
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+37delT
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12946delT
  variant of: http://identifiers.org/hgnc/8714
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 5.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 5.25e1
  variant carriers: 257
genotype quality: GenotypeQuality
num of homozygotes: 1
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: CT
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

5-140812775-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812775
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812773
    reference: chr 5
allele count: 61
allele frequency: 8.107389686337054e-4
allele num: 75240
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+36_2424+37delTT
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10114_1878+10115delTT
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60410_2415+60411delTT
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61588_2410-61587delTT
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61588_2422-61587delTT
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12945_2415+12946delTT
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27843_2424+27844delTT
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47896_2424+47897delTT
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61588_2422-61587delTT
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37982_2424+37983delTT
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56712_2424+56713delTT
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9559_2433+9560delTT
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22599_2418+22600delTT
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61588_2425-61587delTT
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17608_2436+17609delTT
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61588_2425-61587delTT
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42938_2397+42939delTT
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61588_2422-61587delTT
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61588_2422-61587delTT
  variant of: http://identifiers.org/hgnc/8696
canonical: true
consequence: intron
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 1.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
reference allele: CTT
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

5-140812775-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812775
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812775
    reference: chr 5
allele count: 2
allele frequency: 2.658160552897395e-5
allele num: 75240
alternate allele: T
canonical: false
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 9568
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3397
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2190
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4333
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3768
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2406
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1500
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1736
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12461
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2830
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5342
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2878
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1938
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2618
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2695
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2293
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10587
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 1
  allele frequency: 2.358935648235516e-5
  allele num: 42392
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 602
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 6928
  num of homozygotes: 0
population: African
  type: Population
  allele count: 1
  allele frequency: 1.561036528254761e-4
  allele num: 6406
  num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-140812779-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812779
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812779
    reference: chr 5
allele count: 4
allele frequency: 3.647239040046685e-5
allele num: 109672
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+29T>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27836T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61595T>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61595T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61595T>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61595T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42931T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10107T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47889T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17601T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22592T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60403T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61595T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37975T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12938T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61595T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61595T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56705T>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9552T>C
  variant of: http://identifiers.org/hgnc/8698
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21133
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

5-140812782-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812782
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812782
    reference: chr 5
allele count: 1
allele frequency: 9.272309175877161e-6
allele num: 107848
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12941T>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61592T>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61592T>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+32T>A
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17604T>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9555T>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61592T>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27839T>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61592T>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10110T>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37978T>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47892T>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61592T>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42934T>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61592T>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60406T>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61592T>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22595T>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56708T>A
  variant of: http://identifiers.org/hgnc/8704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-140812787-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812787
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812787
    reference: chr 5
allele count: 1
allele frequency: 9.817010916516139e-6
allele num: 101864
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12946T>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61587T>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+37T>A
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61587T>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42939T>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47897T>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17609T>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61587T>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9560T>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27844T>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61587T>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61587T>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61587T>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22600T>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56713T>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10115T>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60411T>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61587T>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37983T>A
  variant of: http://identifiers.org/hgnc/8706
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20321
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

5-140812787-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812787
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812787
    reference: chr 5
allele count: 1
allele frequency: 9.817010916516139e-6
allele num: 101864
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12946T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61587T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9560T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47897T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17609T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61587T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61587T>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56713T>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37983T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+37T>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61587T>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61587T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60411T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27844T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42939T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61587T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10115T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61587T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22600T>C
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

5-140812798-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812798
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812798
    reference: chr 5
allele count: 1
allele frequency: 1.068490223314457e-5
allele num: 93590
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61576T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47908T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9571T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56724T>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61576T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17620T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61576T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60422T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61576T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61576T>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22611T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+48T>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12957T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61576T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61576T>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37994T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27855T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10126T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42950T>C
  variant of: http://identifiers.org/hgnc/8711
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9315
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13741
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD

5-140812801-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812801
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812801
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 92448
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61573C>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61573C>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47911C>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17623C>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+51C>G
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60425C>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22614C>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37997C>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12960C>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61573C>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56727C>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9574C>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61573C>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61573C>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61573C>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10129C>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42953C>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27858C>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61573C>G
  variant of: http://identifiers.org/hgnc/8700
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9368
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

5-140812801-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812801
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812801
    reference: chr 5
allele count: 2
allele frequency: 2.163378331602631e-5
allele num: 92448
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61573C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61573C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42953C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61573C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37997C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17623C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47911C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9574C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60425C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61573C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61573C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61573C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56727C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61573C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22614C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+51C>T
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12960C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27858C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10129C>T
  variant of: http://identifiers.org/hgnc/8698
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3440
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

http://identifiers.org/exac.variant/5-140812807-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812807
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812807
    reference: chr 5
allele count: 1
allele frequency: 1.108917917895717e-5
allele num: 90178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10135C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61567C>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9580C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+38003C>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17629C>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61567C>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56733C>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61567C>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27864C>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+57C>A
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61567C>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60431C>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61567C>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42959C>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61567C>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47917C>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61567C>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12966C>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22620C>A
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17332
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7845
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-140812813-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812813
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812813
    reference: chr 5
allele count: 1
allele frequency: 1.140276859221419e-5
allele num: 87698
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47923T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27870T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61561T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17635T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61561T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61561T>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61561T>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61561T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61561T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+63T>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9586T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42965T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22626T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61561T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10141T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12972T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+38009T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60437T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56739T>C
  variant of: http://identifiers.org/hgnc/8704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5818
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

5-140812823-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812823
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812823
    reference: chr 5
allele count: 1
allele frequency: 1.229195860068343e-5
allele num: 81354
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61551C>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61551C>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61551C>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27880C>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42975C>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+38019C>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61551C>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+73C>G
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61551C>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47933C>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61551C>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9596C>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60447C>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17645C>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61551C>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56749C>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22636C>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10151C>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12982C>G
  variant of: http://identifiers.org/hgnc/8714
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20727
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP

5-140812824-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812824
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812824
    reference: chr 5
allele count: 1
allele frequency: 1.239925604463732e-5
allele num: 80650
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27881G>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56750G>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61550G>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9597G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22637G>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61550G>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61550G>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61550G>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61550G>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+74G>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42976G>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47934G>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+38020G>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60448G>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61550G>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61550G>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10152G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12983G>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17646G>C
  variant of: http://identifiers.org/hgnc/8697
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4037
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6798
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS

5-140812826-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812826
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812826
    reference: chr 5
allele count: 2
allele frequency: 2.471882338400692e-5
allele num: 80910
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61548T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12985T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61548T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60450T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61548T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61548T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9599T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17648T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61548T>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61548T>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22639T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+38022T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27883T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+76T>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10154T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47936T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61548T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42978T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56752T>C
  variant of: http://identifiers.org/hgnc/8704
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20545
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

5-140812828-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812828
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812828
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 78444
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2424+78A>G
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-61546A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+9601A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12987A>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42980A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+60452A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+22641A>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-61546A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27885A>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47938A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-61546A>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-61546A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-61546A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+17650A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-61546A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+10156A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+56754A>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-61546A>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+38024A>G
  variant of: http://identifiers.org/hgnc/8706
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/5-140855640-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855640
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855640
    reference: chr 5
allele count: 2
allele frequency: 1.810872478360074e-5
allele num: 110444
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18734A>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18734A>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18734A>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18734A>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18734A>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18734A>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.-44A>C
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18734A>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18734A>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18734A>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18734A>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18734A>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18734A>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18734A>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18734A>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18734A>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18734A>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18734A>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18734A>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18734A>C
  variant of: http://identifiers.org/hgnc/8707
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

5-140855640-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855640
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855640
    reference: chr 5
allele count: 1
allele frequency: 9.054362391800369e-6
allele num: 110444
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18734A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18734A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18734A>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18734A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18734A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18734A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18734A>G
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18734A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18734A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18734A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18734A>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.-44A>G
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18734A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18734A>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18734A>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18734A>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18734A>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18734A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18734A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18734A>G
  variant of: http://identifiers.org/hgnc/8706
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: A
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: QD

5-140855654-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855654
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855654
    reference: chr 5
allele count: 2
allele frequency: 1.803459034428033e-5
allele num: 110898
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18720C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18720C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.-30C>T
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18720C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18720C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18720C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18720C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18720C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18720C>T
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18720C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18720C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18720C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18720C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18720C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18720C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18720C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18720C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18720C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18720C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18720C>T
  variant of: http://identifiers.org/hgnc/8709
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

5-140855661-GAGAGGAACT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855661
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855652
    reference: chr 5
allele count: 1
allele frequency: 8.972472454509564e-6
allele num: 111452
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.-22_-14delAGAGGAACT
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
reference allele: GAGAGGAACT
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP

5-140855683-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855683
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855683
    reference: chr 5
allele count: 10
allele frequency: 8.82005327312177e-5
allele num: 113378
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18691G>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18691G>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18691G>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18691G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18691G>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18691G>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18691G>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18691G>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18691G>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18691G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18691G>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18691G>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18691G>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.-1G>C
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18691G>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18691G>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18691G>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18691G>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18691G>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18691G>C
  variant of: http://identifiers.org/hgnc/8704
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

5-140855699-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855699
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855699
    reference: chr 5
allele count: 1
allele frequency: 8.633043838596612e-6
allele num: 115834
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18675T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18675T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18675T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18675T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18675T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18675T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18675T>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18675T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18675T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18675T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18675T>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18675T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18675T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.16T>C
  hgvsp: ENSP00000312070.3:p.Trp6Arg
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18675T>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18675T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18675T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18675T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18675T>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18675T>C
  variant of: http://identifiers.org/hgnc/8705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6836
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp6Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-140855702-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855702
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855702
    reference: chr 5
allele count: 24
allele frequency: 2.062741727546197e-4
allele num: 116350
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18672A>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18672A>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18672A>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18672A>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18672A>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18672A>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18672A>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18672A>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18672A>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18672A>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18672A>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18672A>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18672A>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18672A>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18672A>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.19A>C
  hgvsp: ENST00000308177.3:c.19A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18672A>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18672A>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18672A>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18672A>C
  variant of: http://identifiers.org/hgnc/8710
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg7Arg
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

5-140855727-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855727
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855727
    reference: chr 5
allele count: 1
allele frequency: 8.365120792344242e-6
allele num: 119544
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18647G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18647G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18647G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18647G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18647G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18647G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18647G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18647G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18647G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18647G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18647G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.44G>A
  hgvsp: ENSP00000312070.3:p.Arg15Lys
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18647G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18647G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18647G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18647G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18647G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18647G>A
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18647G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18647G>A
  variant of: http://identifiers.org/hgnc/8703
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5509
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg15Lys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

5-140855728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855728
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855728
    reference: chr 5
allele count: 1
allele frequency: 8.36050497450046e-6
allele num: 119610
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18646G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18646G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18646G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18646G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18646G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18646G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18646G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18646G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18646G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18646G>A
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.45G>A
  hgvsp: ENST00000308177.3:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18646G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18646G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18646G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18646G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18646G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18646G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18646G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18646G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18646G>A
  variant of: http://identifiers.org/hgnc/8698
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14667
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg15Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

5-140855733-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855733
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855733
    reference: chr 5
allele count: 1
allele frequency: 8.328197611472925e-6
allele num: 120074
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18641T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18641T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18641T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18641T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18641T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18641T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18641T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18641T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18641T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18641T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18641T>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.50T>C
  hgvsp: ENSP00000312070.3:p.Val17Ala
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18641T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18641T>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18641T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18641T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18641T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18641T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18641T>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18641T>C
  variant of: http://identifiers.org/hgnc/8703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val17Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
reference allele: T
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum

5-140855743-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855743
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855743
    reference: chr 5
allele count: 1
allele frequency: 8.285278716776033e-6
allele num: 120696
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18631G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18631G>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18631G>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18631G>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18631G>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18631G>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18631G>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18631G>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18631G>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18631G>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18631G>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18631G>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18631G>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18631G>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18631G>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.60G>C
  hgvsp: ENSP00000312070.3:p.Leu20Phe
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18631G>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18631G>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18631G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18631G>C
  variant of: http://identifiers.org/hgnc/8706
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu20Phe
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

5-140855776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855776
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855776
    reference: chr 5
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18598G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18598G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18598G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18598G>A
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18598G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18598G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18598G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18598G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18598G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18598G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18598G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18598G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18598G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.93G>A
  hgvsp: ENST00000308177.3:c.93G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18598G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18598G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18598G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18598G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18598G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18598G>A
  variant of: http://identifiers.org/hgnc/8706
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10833
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr31Thr
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

5-140855776-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855776
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855776
    reference: chr 5
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18598G>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18598G>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18598G>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18598G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18598G>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18598G>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18598G>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18598G>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18598G>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18598G>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.93G>T
  hgvsp: ENST00000308177.3:c.93G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18598G>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18598G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18598G>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18598G>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18598G>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18598G>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18598G>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18598G>T
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18598G>T
  variant of: http://identifiers.org/hgnc/8709
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr31Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-140855778-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855778
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855778
    reference: chr 5
allele count: 5
allele frequency: 4.119159032491926e-5
allele num: 121384
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18596T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18596T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18596T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18596T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18596T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18596T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18596T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18596T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18596T>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18596T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18596T>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.95T>C
  hgvsp: ENSP00000312070.3:p.Val32Ala
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18596T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18596T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18596T>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18596T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18596T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18596T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18596T>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18596T>C
  variant of: http://identifiers.org/hgnc/8707
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8505
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val32Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

5-140855779-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855779
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855779
    reference: chr 5
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18595C>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18595C>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18595C>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18595C>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18595C>G
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18595C>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18595C>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18595C>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18595C>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18595C>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18595C>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18595C>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.96C>G
  hgvsp: ENST00000308177.3:c.96C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18595C>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18595C>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18595C>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18595C>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18595C>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18595C>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18595C>G
  variant of: http://identifiers.org/hgnc/8698
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5513
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val32Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

5-140855781-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140855781
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140855781
    reference: chr 5
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-18593T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2425-18593T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1879-18593T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.2425-18593T>C
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-18593T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000240184
  ensembl protein: ENSP00000312070
  ensembl transcript: ENST00000308177
  gene symbol: PCDHGC3
  hgvsc: ENST00000308177.3:c.98T>C
  hgvsp: ENSP00000312070.3:p.Ile33Thr
  variant of: http://identifiers.org/hgnc/8716
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2425-18593T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2425-18593T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-18593T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2437-18593T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-18593T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2434-18593T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2425-18593T>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2419-18593T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2416-18593T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-18593T>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-18593T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2416-18593T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2398-18593T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-18593T>C
  variant of: http://identifiers.org/hgnc/8709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5515
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile33Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum

5-140855787-A-G
type: Variant
allele count: 2
allele frequency: 1.647555028337947e-5
allele num: 121392
alternate allele: G
canonical: true
consequence: missense
filter: PASS
hgvs: p.Tyr35Cys
num of homozygotes: 0
reference allele: A

GenotypeDepth
all individuals: 308
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7416
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7510
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5120
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 213
bin: 9.75e1
variant carriers: 3

GenotypeDepth
all individuals: 184
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 134
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1108
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3213
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4328
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3022
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3796
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24516
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11950
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2037
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Latino
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East Asian
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African
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South Asian
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Other
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ClippingRankSum
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VQSLOD
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DP
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MQ
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BaseQRankSum
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FS
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MQRankSum
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QD
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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East Asian
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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FS
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QD
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Latino
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European (Non-Finnish)
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Other
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QD
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VQSLOD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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FS
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InbreedingCoeff
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BaseQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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Latino
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European (Non-Finnish)
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Other
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FS
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BaseQRankSum
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MQ
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QD
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ClippingRankSum
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MQRankSum
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InbreedingCoeff
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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African
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East Asian
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VQSLOD
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MQ
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MQRankSum
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DP
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InbreedingCoeff
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FS
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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European (Non-Finnish)
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South Asian
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East Asian
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FS
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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VQSLOD
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DP
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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South Asian
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European (Non-Finnish)
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VQSLOD
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MQRankSum
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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Other
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QD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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DP
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MQ
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VQSLOD
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FS
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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South Asian
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European (Finnish)
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MQ
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MQRankSum
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VQSLOD
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DP
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FS
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InbreedingCoeff
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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South Asian
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MQ
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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African
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Latino
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European (Non-Finnish)
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South Asian
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DP
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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FS
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VQSLOD
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MQ
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InbreedingCoeff
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QD
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InbreedingCoeff
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MQ
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VQSLOD
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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African
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South Asian
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QD
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MQ
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InbreedingCoeff
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FS
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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African
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ReadPosRankSum
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MQ
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FS
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QD
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East Asian
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10376
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.00228173411793e-5
allele num: 66616
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 4.19e0

MQRankSum
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SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.332e1

MQ
type: SiteQuality
SIO_000300: 5.929e1

DP
type: SiteQuality
SIO_000300: 2.395709e6

FS
type: SiteQuality
SIO_000300: 5.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.45e-1

GenotypeDepth
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bin: 9.75e1
variant carriers: 17

GenotypeDepth
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bin: 4.75e1
variant carriers: 3

GenotypeDepth
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variant carriers: 9

GenotypeDepth
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bin: 4.25e1
variant carriers: 6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 6

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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variant carriers: 5

GenotypeDepth
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GenotypeDepth
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variant carriers: 6

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 8

GenotypeDepth
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variant carriers: 10

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 97

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.529440110833359e-5
allele num: 66406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 2
allele frequency: 2.232142857142857e-3
allele num: 896
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

South Asian
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allele count: 91
allele frequency: 5.551488530990727e-3
allele num: 16392
num of homozygotes: 1

BaseQRankSum
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SIO_000300: -3.42e0

FS
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SIO_000300: 2.923e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-2

QD
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SIO_000300: 1.162e1

DP
type: SiteQuality
SIO_000300: 2.379625e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.16e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.53e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 2030
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506841058405159e-5
allele num: 66364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.371172e6

MQ
type: SiteQuality
SIO_000300: 6.012e1

FS
type: SiteQuality
SIO_000300: 3.267e0

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.16e-1

BaseQRankSum
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SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

QD
type: SiteQuality
SIO_000300: 1.359e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3788
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509479531457553e-5
allele num: 66248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16306
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

FS
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SIO_000300: 1.672e0

MQRankSum
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SIO_000300: 3.1e-2

VQSLOD
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MQ
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SIO_000300: 5.967e1

ReadPosRankSum
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BaseQRankSum
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SIO_000300: 6.77e0

QD
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ClippingRankSum
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SIO_000300: -1.416e0

DP
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SIO_000300: 2.359701e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.72762645914397e-5
allele num: 10280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.31535077564251e-4
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
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QD
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DP
type: SiteQuality
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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SIO_000300: -2.677e0

MQ
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SIO_000300: 5.977e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4266
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.049972775122512e-5
allele num: 66116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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East Asian
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Latino
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African
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DP
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ClippingRankSum
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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African
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Other
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DP
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FS
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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QD
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MQ
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Other
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Latino
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East Asian
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VQSLOD
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ClippingRankSum
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MQRankSum
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DP
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InbreedingCoeff
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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European (Finnish)
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BaseQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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MQRankSum
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MQ
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Latino
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African
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East Asian
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European (Finnish)
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MQRankSum
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MQ
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VQSLOD
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FS
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DP
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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European (Non-Finnish)
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African
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South Asian
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DP
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MQ
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FS
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BaseQRankSum
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SIO_000300: -9.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.3e-1

QD
type: SiteQuality
SIO_000300: 9.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.4e-2

GenotypeDepth
all individuals: 613
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2758
bin: 1.75e1
variant carriers: 0

GenotypeDepth
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bin: 5.25e1
variant carriers: 0

GenotypeDepth
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bin: 5.75e1
variant carriers: 0

GenotypeDepth
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bin: 7.75e1
variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7779
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 497
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 7025
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 266
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1205
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variant carriers: 0

GenotypeQuality
all individuals: 1257
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578233010321644e-5
allele num: 63362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 2.260318e6

MQRankSum
type: SiteQuality
SIO_000300: -7.5e-2

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

QD
type: SiteQuality
SIO_000300: 3.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 4216
bin: 1.25e1
variant carriers: 148

GenotypeDepth
all individuals: 511
bin: 2.5e0
variant carriers: 2

GenotypeDepth
all individuals: 5302
bin: 2.25e1
variant carriers: 453

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 5784
bin: 4.25e1
variant carriers: 134

GenotypeDepth
all individuals: 2335
bin: 7.5e0
variant carriers: 69

GenotypeDepth
all individuals: 1483
bin: 6.25e1
variant carriers: 3

GenotypeDepth
all individuals: 7169
bin: 3.75e1
variant carriers: 253

GenotypeDepth
all individuals: 2190
bin: 5.75e1
variant carriers: 16

GenotypeDepth
all individuals: 220
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variant carriers: 0

GenotypeDepth
all individuals: 241
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variant carriers: 1

GenotypeDepth
all individuals: 911
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variant carriers: 2

GenotypeDepth
all individuals: 3251
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variant carriers: 13

GenotypeDepth
all individuals: 9568
bin: 2.75e1
variant carriers: 445

GenotypeDepth
all individuals: 578
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variant carriers: 4

GenotypeDepth
all individuals: 327
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variant carriers: 0

GenotypeDepth
all individuals: 70
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variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 3.75e1
variant carriers: 137

GenotypeQuality
all individuals: 2406
bin: 6.75e1
variant carriers: 32

GenotypeQuality
all individuals: 1034
bin: 7.25e1
variant carriers: 27

GenotypeQuality
all individuals: 5342
bin: 2.25e1
variant carriers: 198

GenotypeQuality
all individuals: 2618
bin: 1.75e1
variant carriers: 239

GenotypeQuality
all individuals: 1736
bin: 5.25e1
variant carriers: 75

GenotypeQuality
all individuals: 454
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variant carriers: 9

GenotypeQuality
all individuals: 2695
bin: 3.25e1
variant carriers: 150

GenotypeQuality
all individuals: 1915
bin: 4.75e1
variant carriers: 100

GenotypeQuality
all individuals: 628
bin: 8.25e1
variant carriers: 20

GenotypeQuality
all individuals: 12461
bin: 2.5e0
variant carriers: 205

GenotypeQuality
all individuals: 2878
bin: 2.75e1
variant carriers: 193

GenotypeQuality
all individuals: 2830
bin: 1.25e1
variant carriers: 256

GenotypeQuality
all individuals: 1938
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variant carriers: 96

GenotypeQuality
all individuals: 899
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variant carriers: 27

GenotypeQuality
all individuals: 1500
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variant carriers: 79

GenotypeQuality
all individuals: 10587
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variant carriers: 53

GenotypeQuality
all individuals: 358
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variant carriers: 8

GenotypeQuality
all individuals: 3768
bin: 7.5e0
variant carriers: 258

GenotypeQuality
all individuals: 2293
bin: 9.75e1
variant carriers: 90

East Asian
type: Population
allele count: 146
allele frequency: 2.544440571627745e-2
allele num: 5738
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 21
allele frequency: 3.779697624190065e-3
allele num: 5556
num of homozygotes: 0

Latino
type: Population
allele count: 131
allele frequency: 1.890877598152425e-2
allele num: 6928
num of homozygotes: 0

African
type: Population
allele count: 105
allele frequency: 1.639088354667499e-2
allele num: 6406
num of homozygotes: 0

South Asian
type: Population
allele count: 205
allele frequency: 2.690995011814125e-2
allele num: 7618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 610
allele frequency: 1.438950745423665e-2
allele num: 42392
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.661129568106312e-2
allele num: 602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

DP
type: SiteQuality
SIO_000300: 2.068973e6

FS
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 1.5e0

GenotypeDepth
all individuals: 9568
bin: 2.75e1
variant carriers: 2237

GenotypeDepth
all individuals: 3397
bin: 1.75e1
variant carriers: 1040

GenotypeDepth
all individuals: 5784
bin: 4.25e1
variant carriers: 1196

GenotypeDepth
all individuals: 135
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variant carriers: 36

GenotypeDepth
all individuals: 1483
bin: 6.25e1
variant carriers: 73

GenotypeDepth
all individuals: 4333
bin: 4.75e1
variant carriers: 633

GenotypeDepth
all individuals: 911
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variant carriers: 74

GenotypeDepth
all individuals: 8650
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variant carriers: 2374

GenotypeDepth
all individuals: 511
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variant carriers: 4

GenotypeDepth
all individuals: 4216
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variant carriers: 871

GenotypeDepth
all individuals: 5302
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variant carriers: 1518

GenotypeDepth
all individuals: 578
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variant carriers: 67

GenotypeDepth
all individuals: 2335
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variant carriers: 261

GenotypeDepth
all individuals: 241
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variant carriers: 109

GenotypeDepth
all individuals: 70
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variant carriers: 20

GenotypeDepth
all individuals: 220
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variant carriers: 36

GenotypeDepth
all individuals: 7169
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variant carriers: 2066

GenotypeQuality
all individuals: 2878
bin: 2.75e1
variant carriers: 718

GenotypeQuality
all individuals: 454
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variant carriers: 302

GenotypeQuality
all individuals: 1500
bin: 5.75e1
variant carriers: 658

GenotypeQuality
all individuals: 358
bin: 9.25e1
variant carriers: 229

GenotypeQuality
all individuals: 3768
bin: 7.5e0
variant carriers: 740

GenotypeQuality
all individuals: 1736
bin: 5.25e1
variant carriers: 708

GenotypeQuality
all individuals: 899
bin: 7.75e1
variant carriers: 383

GenotypeQuality
all individuals: 5342
bin: 2.25e1
variant carriers: 768

GenotypeQuality
all individuals: 1915
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variant carriers: 734

GenotypeQuality
all individuals: 2618
bin: 1.75e1
variant carriers: 750

GenotypeQuality
all individuals: 2406
bin: 6.75e1
variant carriers: 433

GenotypeQuality
all individuals: 12461
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variant carriers: 582

GenotypeQuality
all individuals: 2695
bin: 3.25e1
variant carriers: 813

GenotypeQuality
all individuals: 628
bin: 8.25e1
variant carriers: 335

GenotypeQuality
all individuals: 2331
bin: 3.75e1
variant carriers: 738

GenotypeQuality
all individuals: 10587
bin: 6.25e1
variant carriers: 522

GenotypeQuality
all individuals: 1034
bin: 7.25e1
variant carriers: 410

GenotypeQuality
all individuals: 1938
bin: 4.25e1
variant carriers: 675

GenotypeQuality
all individuals: 2830
bin: 1.25e1
variant carriers: 676

GenotypeQuality
all individuals: 2293
bin: 9.75e1
variant carriers: 1891

African
type: Population
allele count: 714
allele frequency: 1.114580081173899e-1
allele num: 6406
num of homozygotes: 1

Latino
type: Population
allele count: 1316
allele frequency: 1.899538106235566e-1
allele num: 6928
num of homozygotes: 0

East Asian
type: Population
allele count: 527
allele frequency: 9.184384803067271e-2
allele num: 5738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 127
allele frequency: 2.28581713462923e-2
allele num: 5556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5775
allele frequency: 1.362285336856011e-1
allele num: 42392
num of homozygotes: 0

South Asian
type: Population
allele count: 1529
allele frequency: 2.007088474665266e-1
allele num: 7618
num of homozygotes: 0

Other
type: Population
allele count: 76
allele frequency: 1.262458471760797e-1
allele num: 602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

FS
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

QD
type: SiteQuality
SIO_000300: 1.5e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-2

DP
type: SiteQuality
SIO_000300: 2.068973e6

GenotypeDepth
all individuals: 135
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variant carriers: 0

GenotypeDepth
all individuals: 5784
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variant carriers: 2

GenotypeDepth
all individuals: 4333
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GenotypeDepth
all individuals: 511
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GenotypeDepth
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GenotypeDepth
all individuals: 2190
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GenotypeDepth
all individuals: 3397
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variant carriers: 13

GenotypeDepth
all individuals: 8650
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GenotypeDepth
all individuals: 220
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GenotypeDepth
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GenotypeDepth
all individuals: 9568
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variant carriers: 21

GenotypeDepth
all individuals: 241
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GenotypeDepth
all individuals: 70
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GenotypeDepth
all individuals: 7169
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variant carriers: 12

GenotypeDepth
all individuals: 2335
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variant carriers: 1

GenotypeDepth
all individuals: 1483
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variant carriers: 0

GenotypeDepth
all individuals: 578
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variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1736
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 10587
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variant carriers: 3

GenotypeQuality
all individuals: 5342
bin: 2.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1034
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variant carriers: 6

GenotypeQuality
all individuals: 628
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variant carriers: 8

GenotypeQuality
all individuals: 1938
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variant carriers: 2

GenotypeQuality
all individuals: 2618
bin: 1.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2830
bin: 1.25e1
variant carriers: 9

GenotypeQuality
all individuals: 2878
bin: 2.75e1
variant carriers: 10

GenotypeQuality
all individuals: 1915
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variant carriers: 7

GenotypeQuality
all individuals: 3768
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variant carriers: 8

GenotypeQuality
all individuals: 454
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variant carriers: 1

GenotypeQuality
all individuals: 12461
bin: 2.5e0
variant carriers: 13

GenotypeQuality
all individuals: 2406
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2695
bin: 3.25e1
variant carriers: 6

GenotypeQuality
all individuals: 358
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GenotypeQuality
all individuals: 899
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variant carriers: 1

GenotypeQuality
all individuals: 1500
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2293
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 4
allele frequency: 6.971070059254096e-4
allele num: 5738
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 4.683109584764284e-4
allele num: 6406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 36
allele frequency: 8.492168333647858e-4
allele num: 42392
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.050144394854293e-3
allele num: 7618
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.661129568106312e-3
allele num: 602
num of homozygotes: 0

Latino
type: Population
allele count: 9
allele frequency: 1.299076212471132e-3
allele num: 6928
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.068973e6

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

QD
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FS
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-2

InbreedingCoeff
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SIO_000300: 2.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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DP
type: SiteQuality
SIO_000300: 2.068973e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

FS
type: SiteQuality
SIO_000300: 1.65e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-2

MQ
type: SiteQuality
SIO_000300: 5.958e1

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.63e-1

QD
type: SiteQuality
SIO_000300: 1.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

GenotypeDepth
all individuals: 10
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variant carriers: 0

GenotypeDepth
all individuals: 7598
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GenotypeDepth
all individuals: 23
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
all individuals: 12886
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GenotypeDepth
all individuals: 169
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GenotypeDepth
all individuals: 5
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GenotypeDepth
all individuals: 14
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GenotypeDepth
all individuals: 17
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GenotypeDepth
all individuals: 1494
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GenotypeDepth
all individuals: 4089
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GenotypeDepth
all individuals: 442
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GenotypeDepth
all individuals: 40
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GenotypeDepth
all individuals: 16
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GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 1393
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GenotypeQuality
all individuals: 327
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variant carriers: 0

GenotypeQuality
all individuals: 215
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GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 243
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GenotypeQuality
all individuals: 72
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GenotypeQuality
all individuals: 8904
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GenotypeQuality
all individuals: 1158
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variant carriers: 0

GenotypeQuality
all individuals: 1428
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GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 36738
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variant carriers: 0

GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 225
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GenotypeQuality
all individuals: 604
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GenotypeQuality
all individuals: 102
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GenotypeQuality
all individuals: 522
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GenotypeQuality
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GenotypeQuality
all individuals: 805
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GenotypeQuality
all individuals: 936
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.900999803960008e-5
allele num: 61212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12928
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.136880400181901e-4
allele num: 8796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8062
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 816
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MQRankSum
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QD
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DP
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FS
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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South Asian
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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MQ
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VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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FS
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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Latino
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InbreedingCoeff
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ClippingRankSum
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QD
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VQSLOD
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MQRankSum
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DP
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MQ
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FS
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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East Asian
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South Asian
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ClippingRankSum
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FS
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VQSLOD
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MQRankSum
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MQ
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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South Asian
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Latino
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East Asian
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MQRankSum
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FS
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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DP
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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FS
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DP
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ReadPosRankSum
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MQ
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BaseQRankSum
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QD
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MQRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Other
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Latino
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East Asian
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MQ
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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FS
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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South Asian
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VQSLOD
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QD
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MQRankSum
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FS
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BaseQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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African
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VQSLOD
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InbreedingCoeff
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MQRankSum
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FS
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MQ
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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East Asian
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Other
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African
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European (Non-Finnish)
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Latino
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ReadPosRankSum
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MQ
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DP
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InbreedingCoeff
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QD
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VQSLOD
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 4.332380209687202e-5
allele num: 46164
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 9044
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7116
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.59e0

DP
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InbreedingCoeff
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SIO_000300: -1.38e-2

VQSLOD
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FS
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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MQ
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SIO_000300: 6.051e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
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SIO_000300: -4.21e-1

QD
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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SIO_000300: -1.67e-2

VQSLOD
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FS
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SIO_000300: 0.0e0

MQ
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DP
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SIO_000300: 7.74627e5

ClippingRankSum
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SIO_000300: 9.22e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 2
allele frequency: 1.750087504375219e-4
allele num: 11428
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63652
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.098597e6

FS
type: SiteQuality
SIO_000300: 7.24e-1

QD
type: SiteQuality
SIO_000300: 1.295e1

MQRankSum
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SIO_000300: 3.22e-1

BaseQRankSum
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SIO_000300: 4.4e-2

MQ
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SIO_000300: 5.963e1

ReadPosRankSum
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SIO_000300: 9.340000000000001e-1

ClippingRankSum
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SIO_000300: -5.45e-1

VQSLOD
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SIO_000300: 2.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.571042543832087e-5
allele num: 63652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
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SIO_000300: 5.963e1

BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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East Asian
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allele count: 0
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num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 2.036245163917736e-4
allele num: 9822
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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BaseQRankSum
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DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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MQ
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QD
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FS
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Latino
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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BaseQRankSum
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MQ
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FS
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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Latino
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South Asian
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BaseQRankSum
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VQSLOD
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FS
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ClippingRankSum
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DP
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MQ
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MQRankSum
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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African
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South Asian
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Other
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European (Non-Finnish)
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East Asian
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InbreedingCoeff
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FS
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QD
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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East Asian
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European (Non-Finnish)
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Other
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Latino
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ReadPosRankSum
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VQSLOD
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DP
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FS
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MQRankSum
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BaseQRankSum
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QD
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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Other
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African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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FS
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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VQSLOD
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East Asian
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South Asian
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European (Non-Finnish)
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FS
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QD
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VQSLOD
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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Other
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African
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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FS
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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Latino
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DP
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ClippingRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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DP
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MQ
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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East Asian
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African
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.494454103963068e-5
allele num: 66716
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 5.23e-1

DP
type: SiteQuality
SIO_000300: 2.20995e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.222e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.17e0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e0

QD
type: SiteQuality
SIO_000300: 1.406e1

MQ
type: SiteQuality
SIO_000300: 5.991e1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 10834
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15283
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3147
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6882
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1414
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8507
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4323
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 359
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 229
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2207
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 908
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17350
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3543
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1835
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7307
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.65e0

VQSLOD
type: SiteQuality
SIO_000300: -3.081e-1

QD
type: SiteQuality
SIO_000300: 1.148e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.888e1

DP
type: SiteQuality
SIO_000300: 2.209408e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.64e-1

GenotypeDepth
all individuals: 10833
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 359
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 908
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8510
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 85
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4323
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 617
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15284
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 228
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6882
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3147
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 222
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 2207
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1414
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21396
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1835
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2412
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7308
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17350
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3543
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.039e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e0

QD
type: SiteQuality
SIO_000300: 1.454e1

DP
type: SiteQuality
SIO_000300: 2.209465e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0