6-30889944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30889944
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30889944
    reference: chr 6
allele count: 2
allele frequency: 1.72259353682905e-5
allele num: 116104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.645G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1778G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1858G>A
  hgvsp: ENSP00000316092.5:p.Asp620Asn
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1858G>A
  hgvsp: ENSP00000394802.2:p.Asp620Asn
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1948G>A
  hgvsp: ENSP00000441000.1:p.Asp650Asn
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1438G>A
  hgvsp: ENSP00000438200.1:p.Asp480Asn
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4471G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11374
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2345
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp650Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

6-30889951-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30889951
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30889951
    reference: chr 6
allele count: 2
allele frequency: 1.722445183182045e-5
allele num: 116114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1445T>C
  hgvsp: ENSP00000438200.1:p.Leu482Pro
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1785T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1865T>C
  hgvsp: ENSP00000316092.5:p.Leu622Pro
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1955T>C
  hgvsp: ENSP00000441000.1:p.Leu652Pro
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4478T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.652T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1865T>C
  hgvsp: ENSP00000394802.2:p.Leu622Pro
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2794
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11373
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu652Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

6-30889964-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30889964
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30889964
    reference: chr 6
allele count: 1
allele frequency: 8.613857974709713e-6
allele num: 116092
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1968G>A
  hgvsp: ENST00000541562.1:c.1968G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1458G>A
  hgvsp: ENST00000542001.1:c.1458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1798G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1878G>A
  hgvsp: ENST00000416670.2:c.1878G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4491G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.665G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1878G>A
  hgvsp: ENST00000321897.5:c.1878G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11373
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val656Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS

6-30889980-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30889980
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30889980
    reference: chr 6
allele count: 1
allele frequency: 8.622324923692425e-6
allele num: 115978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1894T>C
  hgvsp: ENST00000416670.2:c.1894T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1894T>C
  hgvsp: ENST00000321897.5:c.1894T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.681T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1814T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1474T>C
  hgvsp: ENST00000542001.1:c.1474T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1984T>C
  hgvsp: ENST00000541562.1:c.1984T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4507T>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11373
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu662Leu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

6-30889994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30889994
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30889994
    reference: chr 6
allele count: 1
allele frequency: 8.641847281274845e-6
allele num: 115716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1908C>T
  hgvsp: ENST00000321897.5:c.1908C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1488C>T
  hgvsp: ENST00000542001.1:c.1488C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1998C>T
  hgvsp: ENST00000541562.1:c.1998C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1828C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1908C>T
  hgvsp: ENST00000416670.2:c.1908C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4521C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.695C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3275
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11375
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1083
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu666Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

6-30889995-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30889995
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30889995
    reference: chr 6
allele count: 25
allele frequency: 2.160461820318711e-4
allele num: 115716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1909A>G
  hgvsp: ENSP00000394802.2:p.Thr637Ala
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1489A>G
  hgvsp: ENSP00000438200.1:p.Thr497Ala
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1999A>G
  hgvsp: ENSP00000441000.1:p.Thr667Ala
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.696A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1909A>G
  hgvsp: ENSP00000316092.5:p.Thr637Ala
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1829A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4522A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 992
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11388
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4527
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4438
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Thr667Ala
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

6-30890007-C-CCCTTCAGCAAGGTAAGAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890007
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890025
    reference: chr 6
allele count: 8
allele frequency: 6.936977558877598e-5
allele num: 115324
alternate allele: CCCTTCAGCAAGGTAAGAG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11371
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1045
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3854
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48208
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

6-30890018-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890018
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890018
    reference: chr 6
allele count: 2
allele frequency: 1.738344400792685e-5
allele num: 115052
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1512G>T
  hgvsp: ENSP00000438200.1:p.Lys504Asn
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1932G>T
  hgvsp: ENSP00000316092.5:p.Lys644Asn
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.719G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1932G>T
  hgvsp: ENSP00000394802.2:p.Lys644Asn
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1852G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4545G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2022G>T
  hgvsp: ENSP00000441000.1:p.Lys674Asn
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4442
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11372
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 735
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48202
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys674Asn
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD

6-30890019-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890019
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890019
    reference: chr 6
allele count: 1
allele frequency: 8.69187309865276e-6
allele num: 115050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4545+1G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1512+1G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1852+1G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1932+1G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1932+1G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2022+1G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.719+1G>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1988
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1538
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11372
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1006
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1409
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
hgvs: c.2022+1G>T
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

6-30890024-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890024
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890024
    reference: chr 6
allele count: 1
allele frequency: 8.699585899711174e-6
allele num: 114948
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2022+6A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.719+6A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1852+6A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1932+6A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1512+6A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4545+6A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1932+6A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11371
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4529
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2603
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.25e1
  variant carriers: 0
hgvs: c.2022+6A>G
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

6-30890032-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890032
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890032
    reference: chr 6
allele count: 1
allele frequency: 8.720372534314665e-6
allele num: 114674
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2022+14A>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4545+14A>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1512+14A>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.719+14A>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1932+14A>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1852+14A>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1932+14A>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11371
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3136
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2344
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2288
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

6-30890054-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890054
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890054
    reference: chr 6
allele count: 3
allele frequency: 2.632595036680824e-5
allele num: 113956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1852+36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1932+36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2022+36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.719+36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1512+36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4545+36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1932+36C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11368
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4440
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4777
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4708
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3276
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3137
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

6-30890055-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890055
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890055
    reference: chr 6
allele count: 36805
allele frequency: 3.225283488441383e-1
allele num: 114114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1852+37T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.719+37T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1512+37T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4545+37T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1932+37T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2022+37T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1932+37T>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2116
  bin: 1.25e1
  variant carriers: 962
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 4.75e1
  variant carriers: 784
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 7.75e1
  variant carriers: 2531
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 1.75e1
  variant carriers: 845
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.5e0
  variant carriers: 327
genotype depth: GenotypeDepth
  all individuals: 1041
  bin: 2.25e1
  variant carriers: 437
genotype depth: GenotypeDepth
  all individuals: 4810
  bin: 7.25e1
  variant carriers: 2509
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 2.5e0
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 8.75e1
  variant carriers: 2101
genotype depth: GenotypeDepth
  all individuals: 12116
  bin: 9.75e1
  variant carriers: 7673
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 296
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.25e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 5.75e1
  variant carriers: 1585
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 6.75e1
  variant carriers: 2325
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 4.25e1
  variant carriers: 489
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 6.25e1
  variant carriers: 2012
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 2.75e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 4415
  bin: 8.25e1
  variant carriers: 2368
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 9.25e1
  variant carriers: 1861
genotype depth: GenotypeDepth
  all individuals: 2356
  bin: 5.25e1
  variant carriers: 1148
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 7.75e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 7.5e0
  variant carriers: 51
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 8.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.25e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 6.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 6.25e1
  variant carriers: 72
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 3.25e1
  variant carriers: 70
num of homozygotes: 6458
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

6-30890067-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890067
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890067
    reference: chr 6
allele count: 1
allele frequency: 8.813678829543451e-6
allele num: 113460
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1932+49C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1512+49C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4545+49C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1932+49C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.719+49C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1852+49C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2022+49C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4899
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4443
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7761
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3762
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2470
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4811
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1335
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-30890111-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890111
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890111
    reference: chr 6
allele count: 7
allele frequency: 6.224656754641816e-5
allele num: 112456
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2022+93G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1853-48G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.719+93G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1932+93G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1932+93G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1512+93G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4545+93G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1851
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7090
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6793
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6501
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2433
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2529
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

6-30890116-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890116
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890116
    reference: chr 6
allele count: 11
allele frequency: 9.782821365681862e-5
allele num: 112442
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1853-43T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2022+98T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1932+98T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1932+98T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.719+98T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1512+98T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4545+98T>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7086
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4957
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6493
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2722
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3521
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

6-30890130-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890130
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890130
    reference: chr 6
allele count: 1
allele frequency: 8.887308922858158e-6
allele num: 112520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-97T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-97T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1853-29T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-97T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-97T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-97T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-97T>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1509
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6795
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7080
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2746
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1901
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

6-30890138-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890138
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890138
    reference: chr 6
allele count: 1
allele frequency: 8.87342940299567e-6
allele num: 112696
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-89T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-89T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-89T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-89T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-89T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-89T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1853-21T>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6798
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3708
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7088
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5421
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2245
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2556
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2998
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ

6-30890140-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890140
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890140
    reference: chr 6
allele count: 1
allele frequency: 8.881941237076776e-6
allele num: 112588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-87C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-87C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-87C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-87C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-87C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-87C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1853-19C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6802
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7088
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6535
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5393
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3002
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2553
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-30890154-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890154
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890154
    reference: chr 6
allele count: 1
allele frequency: 8.820364457459382e-6
allele num: 113374
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-73A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-73A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1853-5A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-73A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-73A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-73A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-73A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2170
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3031
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6820
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6579
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6804
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2777
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.75e1
  variant carriers: 0
hgvs: n.1853-5A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

6-30890158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890158
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890158
    reference: chr 6
allele count: 348
allele frequency: 3.064027611467211e-3
allele num: 113576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-69G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-69G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-69G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-69G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-69G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1853-1G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-69G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 7107
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6791
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 9.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 3034
  bin: 6.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 2.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 3.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 7.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 5254
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4002
  bin: 2.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 6.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 8.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2840
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 3.25e1
  variant carriers: 0
hgvs: n.1853-1G>A
num of homozygotes: 4
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

6-30890163-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890163
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890163
    reference: chr 6
allele count: 1
allele frequency: 8.790745103554977e-6
allele num: 113756
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-64G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-64G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-64G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1857G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-64G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-64G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-64G>C
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5357
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3052
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2856
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1492
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/6-30890184-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890184
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890184
    reference: chr 6
allele count: 1
allele frequency: 8.763934656103204e-6
allele num: 114104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-43C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-43C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1878C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-43C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-43C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-43C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-43C>A
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6816
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1348
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1883
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

6-30890186-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890186
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890186
    reference: chr 6
allele count: 16
allele frequency: 1.402229544976513e-4
allele num: 114104
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-41T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-41T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-41T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-41T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1880T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-41T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-41T>G
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32492
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3061
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

6-30890194-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890194
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890195
    reference: chr 6
allele count: 580
allele frequency: 5.078186562067697e-3
allele num: 114214
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-33_4546-32insG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-33_2023-32insG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-33_1513-32insG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1888_1889insG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-33_720-32insG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-33_1933-32insG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-33_1933-32insG
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 2.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 7069
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6762
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 319
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3039
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32852
  bin: 9.75e1
  variant carriers: 568
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 11
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-30890194-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890194
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890194
    reference: chr 6
allele count: 1
allele frequency: 8.755494072530513e-6
allele num: 114214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-33A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-33A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-33A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-33A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1888A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-33A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-33A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6762
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7069
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6550
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32852
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7052
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/6-30890195-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890195
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890195
    reference: chr 6
allele count: 580
allele frequency: 5.07489850202996e-3
allele num: 114288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-32A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1889A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-32A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-32A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-32A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-32A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-32A>C
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 3.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 2.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 9.75e1
  variant carriers: 335
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 6433
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.75e1
  variant carriers: 47
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6326
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 11
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

6-30890195-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890195
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890195
    reference: chr 6
allele count: 5969
allele frequency: 5.222770544589108e-2
allele num: 114288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-32A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-32A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1889A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-32A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-32A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-32A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-32A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 2.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 8.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 5996
  bin: 9.75e1
  variant carriers: 4486
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 8.75e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 7.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4673
  bin: 2.25e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 5977
  bin: 3.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 4.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 6.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 5.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 5013
  bin: 5.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 6.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 4801
  bin: 3.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 9.25e1
  variant carriers: 156
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 6433
  bin: 4.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2779
  bin: 9.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6326
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2601
  bin: 8.25e1
  variant carriers: 7
num of homozygotes: 211
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

6-30890199-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890199
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890199
    reference: chr 6
allele count: 1
allele frequency: 8.767469182345825e-6
allele num: 114058
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-28C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-28C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1893C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-28C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-28C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-28C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-28C>G
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

6-30890200-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890200
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890200
    reference: chr 6
allele count: 1
allele frequency: 8.772853282801699e-6
allele num: 113988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-27C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-27C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1894C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-27C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-27C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-27C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-27C>G
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2973
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5414
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2164
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1458
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6314
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2659
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-30890201-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890201
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890201
    reference: chr 6
allele count: 101
allele frequency: 8.860426353188876e-4
allele num: 113990
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1895C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-26C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-26C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-26C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-26C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-26C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-26C>A
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 9.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 6298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2792
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 412
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

6-30890201-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890201
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890201
    reference: chr 6
allele count: 1
allele frequency: 8.772699359592947e-6
allele num: 113990
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-26C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-26C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-26C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1895C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-26C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-26C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-26C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6621
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5043
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3056
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4196
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6298
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2653
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

6-30890203-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890203
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890203
    reference: chr 6
allele count: 2
allele frequency: 1.754878562403482e-5
allele num: 113968
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-24C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-24C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-24C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1897C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-24C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-24C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-24C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3039
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4450
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33465
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

6-30890205-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890205
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890205
    reference: chr 6
allele count: 1
allele frequency: 8.772391529378739e-6
allele num: 113994
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-22G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-22G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1899G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-22G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-22G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-22G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-22G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6301
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6857
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 684
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2165
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1799
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6166
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQRankSum

6-30890206-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890206
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890206
    reference: chr 6
allele count: 37100
allele frequency: 3.245730683090706e-1
allele num: 114304
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-21T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-21T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-21T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-21T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-21T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1900T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-21T>C
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3422
  bin: 4.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 1076
  bin: 1.25e1
  variant carriers: 472
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 3.75e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 9.25e1
  variant carriers: 435
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.5e0
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 6.75e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 2564
  bin: 3.25e1
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 5.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 8.25e1
  variant carriers: 247
genotype depth: GenotypeDepth
  all individuals: 1765
  bin: 6.25e1
  variant carriers: 145
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 4.25e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 7.25e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 1.75e1
  variant carriers: 704
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 2.75e1
  variant carriers: 541
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 7.75e1
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 2.25e1
  variant carriers: 774
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 7.5e0
  variant carriers: 146
genotype depth: GenotypeDepth
  all individuals: 2256
  bin: 5.75e1
  variant carriers: 112
genotype depth: GenotypeDepth
  all individuals: 25974
  bin: 9.75e1
  variant carriers: 25364
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 8.75e1
  variant carriers: 341
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 2.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1470
  bin: 8.25e1
  variant carriers: 53
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 1534
  bin: 9.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 7.5e0
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 3.25e1
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 6.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 878
  bin: 7.25e1
  variant carriers: 55
num of homozygotes: 6524
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum

6-30890211-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890211
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890211
    reference: chr 6
allele count: 1
allele frequency: 8.844861135680169e-6
allele num: 113060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-16C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-16C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1905C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-16C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-16C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-16C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-16C>G
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4557
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1506
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 621
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2498
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

6-30890216-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890216
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890216
    reference: chr 6
allele count: 5
allele frequency: 4.428776417651331e-5
allele num: 112898
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-11C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-11C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-11C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1910C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-11C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-11C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-11C>G
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1507
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/6-30890222-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890222
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890222
    reference: chr 6
allele count: 1
allele frequency: 8.889362988248262e-6
allele num: 112494
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-5C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-5C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-5C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-5C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-5C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1916C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-5C>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4572
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2612
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34901
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 3.25e1
  variant carriers: 0
hgvs: c.2023-5C>A
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

6-30890222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890222
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890222
    reference: chr 6
allele count: 1
allele frequency: 8.889362988248262e-6
allele num: 112494
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-5C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-5C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1916C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-5C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-5C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-5C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-5C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6966
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1349
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
hgvs: c.2023-5C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

6-30890223-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890223
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890223
    reference: chr 6
allele count: 14
allele frequency: 1.245573764657734e-4
allele num: 112398
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-4C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-4C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-4C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-4C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-4C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1917C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-4C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6967
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3828
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2587
  bin: 2.25e1
  variant carriers: 0
hgvs: c.2023-4C>T
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

6-30890226-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890226
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890226
    reference: chr 6
allele count: 1
allele frequency: 8.907416314823723e-6
allele num: 112266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1933-1G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1513-1G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2023-1G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1933-1G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.720-1G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1920G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4546-1G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4526
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4401
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34894
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
hgvs: c.2023-1G>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff

6-30890232-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890232
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890232
    reference: chr 6
allele count: 1
allele frequency: 8.936071345593623e-6
allele num: 111906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1938T>G
  hgvsp: ENST00000321897.5:c.1938T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1926T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2028T>G
  hgvsp: ENST00000541562.1:c.2028T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1938T>G
  hgvsp: ENST00000416670.2:c.1938T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.725T>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1518T>G
  hgvsp: ENST00000542001.1:c.1518T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4551T>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2749
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34893
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu676Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

6-30890237-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890237
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890237
    reference: chr 6
allele count: 1
allele frequency: 8.958165367732689e-6
allele num: 111630
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2033A>G
  hgvsp: ENSP00000441000.1:p.His678Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1523A>G
  hgvsp: ENSP00000438200.1:p.His508Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.730A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1943A>G
  hgvsp: ENSP00000316092.5:p.His648Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1931A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1943A>G
  hgvsp: ENSP00000394802.2:p.His648Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4556A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
hgvs: p.His678Arg
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

6-30890248-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890248
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890248
    reference: chr 6
allele count: 7
allele frequency: 6.301083786411263e-5
allele num: 111092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4567C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1942C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1534C>T
  hgvsp: ENSP00000438200.1:p.Arg512Trp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1954C>T
  hgvsp: ENSP00000394802.2:p.Arg652Trp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1954C>T
  hgvsp: ENSP00000316092.5:p.Arg652Trp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2044C>T
  hgvsp: ENSP00000441000.1:p.Arg682Trp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.741C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5839
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2884
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg682Trp
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

6-30890249-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890249
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890249
    reference: chr 6
allele count: 1
allele frequency: 9.00835975785529e-6
allele num: 111008
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2045G>A
  hgvsp: ENSP00000441000.1:p.Arg682Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.742G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1955G>A
  hgvsp: ENSP00000316092.5:p.Arg652Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1955G>A
  hgvsp: ENSP00000394802.2:p.Arg652Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4568G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1535G>A
  hgvsp: ENSP00000438200.1:p.Arg512Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1943G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1833
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3826
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34890
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Arg682Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-30890256-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890256
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890256
    reference: chr 6
allele count: 1
allele frequency: 9.029997652200611e-6
allele num: 110742
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2052G>T
  hgvsp: ENSP00000441000.1:p.Arg684Ser
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1962G>T
  hgvsp: ENSP00000316092.5:p.Arg654Ser
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1542G>T
  hgvsp: ENSP00000438200.1:p.Arg514Ser
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4575G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1962G>T
  hgvsp: ENSP00000394802.2:p.Arg654Ser
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.749G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1950G>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg684Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD

6-30890263-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890263
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890263
    reference: chr 6
allele count: 2
allele frequency: 1.81123326873268e-5
allele num: 110422
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1549C>G
  hgvsp: ENSP00000438200.1:p.Arg517Gly
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.756C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1969C>G
  hgvsp: ENSP00000316092.5:p.Arg657Gly
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1957C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1969C>G
  hgvsp: ENSP00000394802.2:p.Arg657Gly
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2059C>G
  hgvsp: ENSP00000441000.1:p.Arg687Gly
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4582C>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg687Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: DP

6-30890263-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890263
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890263
    reference: chr 6
allele count: 1
allele frequency: 9.0561663436634e-6
allele num: 110422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.756C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1969C>T
  hgvsp: ENSP00000394802.2:p.Arg657Trp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1969C>T
  hgvsp: ENSP00000316092.5:p.Arg657Trp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1957C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4582C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2059C>T
  hgvsp: ENSP00000441000.1:p.Arg687Trp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1549C>T
  hgvsp: ENSP00000438200.1:p.Arg517Trp
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6852
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2515
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1788
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34888
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3765
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3551
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1051
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg687Trp
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

6-30890264-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890264
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890264
    reference: chr 6
allele count: 27
allele frequency: 2.447115123171461e-4
allele num: 110334
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1550G>A
  hgvsp: ENSP00000438200.1:p.Arg517Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.757G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1970G>A
  hgvsp: ENSP00000316092.5:p.Arg657Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1970G>A
  hgvsp: ENSP00000394802.2:p.Arg657Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2060G>A
  hgvsp: ENSP00000441000.1:p.Arg687Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4583G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1958G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3831
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6969
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5837
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1492
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2884
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1088
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg687Gln
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/6-30890266-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890266
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890266
    reference: chr 6
allele count: 1
allele frequency: 9.071775890848393e-6
allele num: 110232
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1972A>C
  hgvsp: ENSP00000394802.2:p.Lys658Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1972A>C
  hgvsp: ENSP00000316092.5:p.Lys658Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2062A>C
  hgvsp: ENSP00000441000.1:p.Lys688Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.759A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1552A>C
  hgvsp: ENSP00000438200.1:p.Lys518Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1960A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4585A>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1546
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3647
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys688Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

6-30890268-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890268
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890268
    reference: chr 6
allele count: 1
allele frequency: 9.072269700433655e-6
allele num: 110226
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1974G>A
  hgvsp: ENST00000321897.5:c.1974G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1554G>A
  hgvsp: ENST00000542001.1:c.1554G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4587G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1974G>A
  hgvsp: ENST00000416670.2:c.1974G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1962G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.761G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2064G>A
  hgvsp: ENST00000541562.1:c.2064G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34889
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys688Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD

6-30890300-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890300
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890300
    reference: chr 6
allele count: 2
allele frequency: 1.852812569480471e-5
allele num: 107944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.793C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4619C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1586C>T
  hgvsp: ENSP00000438200.1:p.Pro529Leu
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2006C>T
  hgvsp: ENSP00000394802.2:p.Pro669Leu
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2096C>T
  hgvsp: ENSP00000441000.1:p.Pro699Leu
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1994C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2006C>T
  hgvsp: ENSP00000316092.5:p.Pro669Leu
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2609
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro699Leu
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

6-30890302-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890302
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890302
    reference: chr 6
allele count: 1
allele frequency: 9.263033087554189e-6
allele num: 107956
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2098A>G
  hgvsp: ENSP00000441000.1:p.Arg700Gly
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1588A>G
  hgvsp: ENSP00000438200.1:p.Arg530Gly
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2008A>G
  hgvsp: ENSP00000316092.5:p.Arg670Gly
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.795A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2008A>G
  hgvsp: ENSP00000394802.2:p.Arg670Gly
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4621A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1996A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg700Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-30890316-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890316
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890316
    reference: chr 6
allele count: 1
allele frequency: 9.335847788337658e-6
allele num: 107114
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1602T>C
  hgvsp: ENST00000542001.1:c.1602T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4635T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2022T>C
  hgvsp: ENST00000321897.5:c.2022T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2010T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2022T>C
  hgvsp: ENST00000416670.2:c.2022T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2112T>C
  hgvsp: ENST00000541562.1:c.2112T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.809T>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3370
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser704Ser
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

6-30890317-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890317
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890317
    reference: chr 6
allele count: 2
allele frequency: 1.867692652497105e-5
allele num: 107084
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1603G>C
  hgvsp: ENSP00000438200.1:p.Gly535Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2011G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2023G>C
  hgvsp: ENSP00000316092.5:p.Gly675Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.810G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2023G>C
  hgvsp: ENSP00000394802.2:p.Gly675Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4636G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2113G>C
  hgvsp: ENSP00000441000.1:p.Gly705Arg
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2582
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34890
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2605
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly705Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

6-30890319-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890319
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890319
    reference: chr 6
allele count: 2
allele frequency: 1.869857890800299e-5
allele num: 106960
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2115G>A
  hgvsp: ENST00000541562.1:c.2115G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2025G>A
  hgvsp: ENST00000416670.2:c.2025G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1605G>A
  hgvsp: ENST00000542001.1:c.1605G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2025G>A
  hgvsp: ENST00000321897.5:c.2025G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4638G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.812G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2013G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 877
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1535
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Gly705Gly
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

6-30890330-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890330
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890330
    reference: chr 6
allele count: 9
allele frequency: 8.449593480669208e-5
allele num: 106514
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2036A>G
  hgvsp: ENSP00000394802.2:p.Gln679Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2024A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2036A>G
  hgvsp: ENSP00000316092.5:p.Gln679Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1616A>G
  hgvsp: ENSP00000438200.1:p.Gln539Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4649A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2126A>G
  hgvsp: ENSP00000441000.1:p.Gln709Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.823A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5056
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6970
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1786
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2115
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln709Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

6-30890339-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890339
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890339
    reference: chr 6
allele count: 5
allele frequency: 4.707300080965561e-5
allele num: 106218
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2127+8C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2025+8C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2037+8C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4650+8C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2037+8C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1617+8C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.824+8C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3833
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2871
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2338
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 2.25e1
  variant carriers: 0
hgvs: c.2127+8C>T
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

6-30890340-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890340
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890340
    reference: chr 6
allele count: 2
allele frequency: 1.882565560345639e-5
allele num: 106238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2025+9G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2037+9G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.824+9G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2037+9G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1617+9G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4650+9G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2127+9G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6858
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4463
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5832
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3145
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1924
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3148
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2340
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

6-30890346-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890346
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890346
    reference: chr 6
allele count: 1
allele frequency: 9.421163702140488e-6
allele num: 106144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2037+15C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2037+15C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.824+15C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1617+15C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4650+15C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2127+15C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2025+15C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2060
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3369
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3298
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2330
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP

6-30890351-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890351
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890351
    reference: chr 6
allele count: 3
allele frequency: 2.827521206409048e-5
allele num: 106100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.824+20T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2037+20T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4650+20T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1617+20T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2127+20T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2025+20T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2037+20T>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5829
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3383
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4447
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34882
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2325
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

6-30890352-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890352
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890352
    reference: chr 6
allele count: 1
allele frequency: 9.42684766214178e-6
allele num: 106080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2037+21A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1617+21A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4650+21A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2127+21A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.824+21A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2025+21A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2037+21A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6972
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6849
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2061
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2873
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1530
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

6-30890356-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890356
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890356
    reference: chr 6
allele count: 27
allele frequency: 2.545584824543209e-4
allele num: 106066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1617+25G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4650+25G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.824+25G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2127+25G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2025+25G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2037+25G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2037+25G>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5823
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6973
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4434
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1340
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3239
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

6-30890358-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890358
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890358
    reference: chr 6
allele count: 3
allele frequency: 2.828747619137421e-5
allele num: 106054
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2037+27A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2025+27A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4650+27A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.824+27A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1617+27A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2037+27A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2127+27A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6848
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6977
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3377
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5821
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2582
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3207
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1894
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

6-30890363-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890363
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890363
    reference: chr 6
allele count: 2
allele frequency: 1.888395807761307e-5
allele num: 105910
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477052
  gene symbol: VARS2
  hgvsc: ENST00000477052.1:n.4G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4650+32G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1617+32G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2037+32G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2127+32G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2037+32G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2025+32G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.824+32G>T
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3313
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6953
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34861
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2988
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

6-30890367-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890367
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890367
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 105970
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2025+36G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1617+36G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4650+36G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2037+36G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477052
  gene symbol: VARS2
  hgvsc: ENST00000477052.1:n.8G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.824+36G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2127+36G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2037+36G>T
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6944
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6774
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3295
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3103
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3118
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

6-30890371-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890371
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890371
    reference: chr 6
allele count: 1
allele frequency: 9.432894389314418e-6
allele num: 106012
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1617+40G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2127+40G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2037+40G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2025+40G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4650+40G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477052
  gene symbol: VARS2
  hgvsc: ENST00000477052.1:n.12G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.824+40G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2037+40G>C
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6935
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6163
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3836
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2877
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2059
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2790
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

6-30890441-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890441
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890441
    reference: chr 6
allele count: 4
allele frequency: 3.612977816316208e-5
allele num: 110712
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2128-42G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2038-42G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4651-42G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2038-42G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1618-42G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477052
  gene symbol: VARS2
  hgvsc: ENST00000477052.1:n.82G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2026-42G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.825-42G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8989
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3843
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10704
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2924
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5675
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

6-30890443-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890443
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890443
    reference: chr 6
allele count: 2
allele frequency: 1.818380186929483e-5
allele num: 109988
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.825-40C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2026-40C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2128-40C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477052
  gene symbol: VARS2
  hgvsc: ENST00000477052.1:n.84C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2038-40C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2038-40C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1618-40C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4651-40C>G
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8910
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2890
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10655
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3423
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

6-30890447-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890447
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890447
    reference: chr 6
allele count: 20
allele frequency: 1.806227873708547e-4
allele num: 110728
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477052
  gene symbol: VARS2
  hgvsc: ENST00000477052.1:n.88C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.825-36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2128-36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2038-36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1618-36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4651-36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2038-36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2026-36C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2476
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6908
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10603
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4231
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8907
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4142
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-30890450-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890450
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890450
    reference: chr 6
allele count: 1
allele frequency: 9.008035167369294e-6
allele num: 111012
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2128-33C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477052
  gene symbol: VARS2
  hgvsc: ENST00000477052.1:n.91C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2038-33C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2026-33C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.825-33C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1618-33C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2038-33C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4651-33C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9250
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6918
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3544
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4515
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2568
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-30890451-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30890451
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30890451
    reference: chr 6
allele count: 1
allele frequency: 9.001062125330788e-6
allele num: 111098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477052
  gene symbol: VARS2
  hgvsc: ENST00000477052.1:n.92C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.825-32C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.2038-32C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.2026-32C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.2038-32C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.2128-32C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.1618-32C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4651-32C>G
  variant of: http://identifiers.org/hgnc/21642
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9283
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 5849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48194
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.161755406601745e-5
allele num: 63256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.225e0

FS
type: SiteQuality
SIO_000300: 2.947e0

DP
type: SiteQuality
SIO_000300: 4.202117e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: 3.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 1.183e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48193
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5864
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 7.5e0
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.185314685314685e-4
allele num: 9152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.85e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

DP
type: SiteQuality
SIO_000300: 4.202387e6

QD
type: SiteQuality
SIO_000300: 1.406e1

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48195
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 624
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5825
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.726003490401397e-5
allele num: 11460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63256
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

DP
type: SiteQuality
SIO_000300: 4.202137e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

QD
type: SiteQuality
SIO_000300: 1.173e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.267e0

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.675e0

FS
type: SiteQuality
SIO_000300: 4.85e0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5616
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48199
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 522
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581477732793522e-5
allele num: 63232
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.999999999999999e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.461e0

VQSLOD
type: SiteQuality
SIO_000300: -7.314000000000001e-1

FS
type: SiteQuality
SIO_000300: 7.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

QD
type: SiteQuality
SIO_000300: 1.108e1

DP
type: SiteQuality
SIO_000300: 4.20003e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

MQ
type: SiteQuality
SIO_000300: 5.793e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e-1

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4846
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48204
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.583180292571718e-5
allele num: 63164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15940
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.96e0

FS
type: SiteQuality
SIO_000300: 4.943e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.971e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.325e0

QD
type: SiteQuality
SIO_000300: 1.233e1

MQRankSum
type: SiteQuality
SIO_000300: 8.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

MQ
type: SiteQuality
SIO_000300: 5.927e1

DP
type: SiteQuality
SIO_000300: 4.191327e6

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4900
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1080
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48207
bin: 9.75e1
variant carriers: 25

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.091226538629419e-4
allele num: 9164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 21
allele frequency: 3.324468085106383e-4
allele num: 63168
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.618715083798883e-4
allele num: 11456
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.89e-1

QD
type: SiteQuality
SIO_000300: 1.211e1

DP
type: SiteQuality
SIO_000300: 4.192232e6

MQRankSum
type: SiteQuality
SIO_000300: 1.14e-1

FS
type: SiteQuality
SIO_000300: 1.114e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQ
type: SiteQuality
SIO_000300: 5.957e1

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 476
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 5.105948429920858e-4
allele num: 15668
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63052
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.346e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.71e-1

MQ
type: SiteQuality
SIO_000300: 5.247e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

DP
type: SiteQuality
SIO_000300: 4.176455e6

MQRankSum
type: SiteQuality
SIO_000300: -2.858e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

QD
type: SiteQuality
SIO_000300: 3.34e0

VQSLOD
type: SiteQuality
SIO_000300: 2.37e-1

GenotypeQuality
all individuals: 3010
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.02571860816944e-4
allele num: 6610
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.162548e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.741e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

VQSLOD
type: SiteQuality
SIO_000300: -3.389e-1

FS
type: SiteQuality
SIO_000300: 8.699e0

MQRankSum
type: SiteQuality
SIO_000300: -1.011e0

QD
type: SiteQuality
SIO_000300: 1.208e1

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 467
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variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48202
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 581
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9154
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588158688816186e-5
allele num: 62966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.050000000000001e0

FS
type: SiteQuality
SIO_000300: 7.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.859e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.323e0

DP
type: SiteQuality
SIO_000300: 4.161615e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
all individuals: 1486
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48202
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 580
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15412
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.588612823282709e-5
allele num: 62948
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.647e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e0

DP
type: SiteQuality
SIO_000300: 4.156502e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.207e1

GenotypeQuality
all individuals: 495
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 752
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1579
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48201
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.590381373453354e-5
allele num: 62878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15214
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.25e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.888e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.61e-1

FS
type: SiteQuality
SIO_000300: 1.3166e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.3e-1

DP
type: SiteQuality
SIO_000300: 4.150367e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 3.503e1

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeQuality
all individuals: 254
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1559
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48196
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.190708656392585e-5
allele num: 62682
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9142
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.732099196646873e-5
allele num: 11452
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.142095e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.36e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.15e-1

FS
type: SiteQuality
SIO_000300: 7.549e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e0

QD
type: SiteQuality
SIO_000300: 1.287e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.914e0

VQSLOD
type: SiteQuality
SIO_000300: 3.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.14e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 188
bin: 4.75e1
variant carriers: 96

GenotypeQuality
all individuals: 301
bin: 2.5e0
variant carriers: 9

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 58

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 58

GenotypeQuality
all individuals: 52018
bin: 9.75e1
variant carriers: 29641

GenotypeQuality
all individuals: 243
bin: 7.25e1
variant carriers: 45

GenotypeQuality
all individuals: 898
bin: 2.25e1
variant carriers: 49

GenotypeQuality
all individuals: 394
bin: 3.75e1
variant carriers: 108

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 49

GenotypeQuality
all individuals: 355
bin: 8.25e1
variant carriers: 74

East Asian
type: Population
allele count: 2434
allele frequency: 2.868929750117869e-1
allele num: 8484
num of homozygotes: 348

African
type: Population
allele count: 1131
allele frequency: 1.236606166630221e-1
allele num: 9146
num of homozygotes: 78

European (Non-Finnish)
type: Population
allele count: 23737
allele frequency: 3.782909415439536e-1
allele num: 62748
num of homozygotes: 4496

Latino
type: Population
allele count: 2443
allele frequency: 2.13437008561943e-1
allele num: 11446
num of homozygotes: 284

European (Finnish)
type: Population
allele count: 2678
allele frequency: 4.056346561647985e-1
allele num: 6602
num of homozygotes: 561

South Asian
type: Population
allele count: 4074
allele frequency: 2.745653052972098e-1
allele num: 14838
num of homozygotes: 624

Other
type: Population
allele count: 308
allele frequency: 3.623529411764706e-1
allele num: 850
num of homozygotes: 67

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

FS
type: SiteQuality
SIO_000300: 6.64e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 4.72e0

MQRankSum
type: SiteQuality
SIO_000300: 9.6e-2

DP
type: SiteQuality
SIO_000300: 4.245343e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 1.795e1

GenotypeQuality
all individuals: 559
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48376
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 455
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 627
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62546
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

FS
type: SiteQuality
SIO_000300: 4.723e0

DP
type: SiteQuality
SIO_000300: 3.859029e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

MQ
type: SiteQuality
SIO_000300: 5.964e1

VQSLOD
type: SiteQuality
SIO_000300: -1.563e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

QD
type: SiteQuality
SIO_000300: 2.458e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.462e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e-1

GenotypeQuality
all individuals: 1901
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3370
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2714
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1292
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32375
bin: 9.75e1
variant carriers: 7

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.422272791921491e-4
allele num: 14062
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.432624113475177e-4
allele num: 9024
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.611759396557282e-5
allele num: 62044
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.563099e6

FS
type: SiteQuality
SIO_000300: 6.354e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

QD
type: SiteQuality
SIO_000300: 1.304e1

GenotypeQuality
all individuals: 171
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1302
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
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variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32377
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 2962
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2521
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.222222222222222e-3
allele num: 9000
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62038
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.653e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.63e-1

FS
type: SiteQuality
SIO_000300: 3.209e0

QD
type: SiteQuality
SIO_000300: 1.243e1

MQRankSum
type: SiteQuality
SIO_000300: 8.03e-1

DP
type: SiteQuality
SIO_000300: 2.560702e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.971e1

VQSLOD
type: SiteQuality
SIO_000300: 8.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.25e-1

GenotypeQuality
all individuals: 2446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2984
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4570
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
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variant carriers: 0

GenotypeQuality
all individuals: 32376
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1182
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.611499661585071e-5
allele num: 62054
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.306e0

DP
type: SiteQuality
SIO_000300: 2.567069e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

QD
type: SiteQuality
SIO_000300: 7.37e0

VQSLOD
type: SiteQuality
SIO_000300: -1.482e0

GenotypeQuality
all individuals: 732
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32385
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 967
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1910
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62116
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.125112511251125e-4
allele num: 8888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14378
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.489e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 6.545e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.13e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.892e0

DP
type: SiteQuality
SIO_000300: 2.57586e6

QD
type: SiteQuality
SIO_000300: 9.210000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.2e1

GenotypeQuality
all individuals: 2167
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1774
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
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GenotypeQuality
all individuals: 2613
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 7.5e0
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GenotypeQuality
all individuals: 209
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32390
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 228
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2780
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.179245283018868e-4
allele num: 8480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

FS
type: SiteQuality
SIO_000300: 7.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

DP
type: SiteQuality
SIO_000300: 2.577726e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.382e1

VQSLOD
type: SiteQuality
SIO_000300: 6.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32446
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3050
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2853
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 314
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1942
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2727
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.133529811834051e-4
allele num: 8822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.45e-1

DP
type: SiteQuality
SIO_000300: 2.598756e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.552e0

MQ
type: SiteQuality
SIO_000300: 4.984e1

QD
type: SiteQuality
SIO_000300: 1.07e1

GenotypeQuality
all individuals: 258
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1589
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3042
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 561
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variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7123
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2799
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2716
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32587
bin: 9.75e1
variant carriers: 342

European (Non-Finnish)
type: Population
allele count: 61
allele frequency: 9.762811689766653e-4
allele num: 62482
num of homozygotes: 0

Latino
type: Population
allele count: 25
allele frequency: 2.18799229826711e-3
allele num: 11426
num of homozygotes: 0

African
type: Population
allele count: 209
allele frequency: 2.366394927536232e-2
allele num: 8832
num of homozygotes: 3

Other
type: Population
allele count: 5
allele frequency: 5.924170616113744e-3
allele num: 844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-4
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 47
allele frequency: 3.158602150537634e-3
allele num: 14880
num of homozygotes: 1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.488e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.425e0

DP
type: SiteQuality
SIO_000300: 2.611151e6

GenotypeQuality
all individuals: 7410
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
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variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 3.75e1
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GenotypeQuality
all individuals: 57
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
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GenotypeQuality
all individuals: 2843
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
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GenotypeQuality
all individuals: 32471
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14978
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5992835209826e-5
allele num: 62528
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.423e1

FS
type: SiteQuality
SIO_000300: 4.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.001e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 6.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.814e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.07e-1

DP
type: SiteQuality
SIO_000300: 2.60855e6

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32488
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2752
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7436
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2886
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62708
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8918
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

DP
type: SiteQuality
SIO_000300: 2.615881e6

FS
type: SiteQuality
SIO_000300: 7.843e0

MQRankSum
type: SiteQuality
SIO_000300: -4.69e-1

QD
type: SiteQuality
SIO_000300: 1.749e1

VQSLOD
type: SiteQuality
SIO_000300: -1.09e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.768e0

MQ
type: SiteQuality
SIO_000300: 5.937e1

GenotypeQuality
all individuals: 317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1885
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2867
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7371
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1954
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8916
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.550857725910337e-4
allele num: 62724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

DP
type: SiteQuality
SIO_000300: 2.617426e6

MQ
type: SiteQuality
SIO_000300: 5.959e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.117e0

VQSLOD
type: SiteQuality
SIO_000300: 4.96e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

QD
type: SiteQuality
SIO_000300: 1.406e1

GenotypeQuality
all individuals: 551
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1874
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1295
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 6.75e1
variant carriers: 1

African
type: Population
allele count: 4
allele frequency: 4.465282429113642e-4
allele num: 8958
num of homozygotes: 0

East Asian
type: Population
allele count: 62
allele frequency: 7.283834586466165e-3
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 476
allele frequency: 3.154825026511135e-2
allele num: 15088
num of homozygotes: 10

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 3.027984955695799e-4
allele num: 62748
num of homozygotes: 0

Other
type: Population
allele count: 14
allele frequency: 1.654846335697399e-2
allele num: 846
num of homozygotes: 1

Latino
type: Population
allele count: 5
allele frequency: 4.366049598323437e-4
allele num: 11452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

MQ
type: SiteQuality
SIO_000300: 5.991e1

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

FS
type: SiteQuality
SIO_000300: 1.541e0

DP
type: SiteQuality
SIO_000300: 2.646983e6

QD
type: SiteQuality
SIO_000300: 1.704e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.33e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-2

GenotypeQuality
all individuals: 120
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1874
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3039
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.593676292471473e-5
allele num: 62748
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.07e-1

MQ
type: SiteQuality
SIO_000300: 5.991e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.33e-2

QD
type: SiteQuality
SIO_000300: 1.704e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.7e-2

FS
type: SiteQuality
SIO_000300: 1.541e0

DP
type: SiteQuality
SIO_000300: 2.646983e6

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

GenotypeQuality
all individuals: 1751
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 291
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 203
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2601
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35084
bin: 9.75e1
variant carriers: 568

GenotypeQuality
all individuals: 2779
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 3.026441541892323e-4
allele num: 62780
num of homozygotes: 0

South Asian
type: Population
allele count: 476
allele frequency: 3.15273546165055e-2
allele num: 15098
num of homozygotes: 10

Latino
type: Population
allele count: 5
allele frequency: 4.366812227074236e-4
allele num: 11450
num of homozygotes: 0

Other
type: Population
allele count: 14
allele frequency: 1.650943396226415e-2
allele num: 848
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.449388209121246e-4
allele num: 8990
num of homozygotes: 0

East Asian
type: Population
allele count: 62
allele frequency: 7.283834586466165e-3
allele num: 8512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.26e0

QD
type: SiteQuality
SIO_000300: 1.441e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

DP
type: SiteQuality
SIO_000300: 3.100646e6

GenotypeQuality
all individuals: 83
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 35084
bin: 9.75e1
variant carriers: 5713

GenotypeQuality
all individuals: 334
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 203
bin: 4.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1202
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 151
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2573
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1700
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1751
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2474
bin: 7.75e1
variant carriers: 6

Other
type: Population
allele count: 52
allele frequency: 6.132075471698113e-2
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 377
allele frequency: 5.703479576399395e-2
allele num: 6610
num of homozygotes: 19

African
type: Population
allele count: 505
allele frequency: 5.617352614015573e-2
allele num: 8990
num of homozygotes: 11

South Asian
type: Population
allele count: 285
allele frequency: 1.887667240694132e-2
allele num: 15098
num of homozygotes: 7

Latino
type: Population
allele count: 325
allele frequency: 2.838427947598253e-2
allele num: 11450
num of homozygotes: 11

East Asian
type: Population
allele count: 31
allele frequency: 3.641917293233083e-3
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4394
allele frequency: 6.99904428161835e-2
allele num: 62780
num of homozygotes: 163

ClippingRankSum
type: SiteQuality
SIO_000300: -3.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.03e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

QD
type: SiteQuality
SIO_000300: 1.441e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e0

DP
type: SiteQuality
SIO_000300: 3.100646e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.63e-1

GenotypeQuality
all individuals: 2659
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1800
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33431
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2800
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.594743724683443e-5
allele num: 62706
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

DP
type: SiteQuality
SIO_000300: 2.80134e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.691e0

VQSLOD
type: SiteQuality
SIO_000300: 1.42e0

MQRankSum
type: SiteQuality
SIO_000300: -1.05e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

FS
type: SiteQuality
SIO_000300: 2.247e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.3e1

GenotypeQuality
all individuals: 355
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33432
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6071
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2725
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2799
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62688
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.716818914562064e-5
allele num: 14888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.007e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

DP
type: SiteQuality
SIO_000300: 2.800678e6

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

FS
type: SiteQuality
SIO_000300: 3.012e0

QD
type: SiteQuality
SIO_000300: 1.416e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33475
bin: 9.75e1
variant carriers: 101

GenotypeQuality
all individuals: 2977
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 18
allele frequency: 1.572052401746725e-3
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 71
allele frequency: 1.132484767282355e-3
allele num: 62694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 1.223581757508343e-3
allele num: 8990
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14888
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.182033096926714e-3
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.492e0

QD
type: SiteQuality
SIO_000300: 1.414e1

MQ
type: SiteQuality
SIO_000300: 5.951e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

DP
type: SiteQuality
SIO_000300: 2.810366e6

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

GenotypeQuality
all individuals: 350
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33475
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2731
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6139
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1868
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.595048968003318e-5
allele num: 62694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14888
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.951e1

MQRankSum
type: SiteQuality
SIO_000300: 3.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.492e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.414e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

DP
type: SiteQuality
SIO_000300: 2.810366e6

GenotypeQuality
all individuals: 336
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6019
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2658
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2977
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.189996172004593e-5
allele num: 62696
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14854
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.620000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

QD
type: SiteQuality
SIO_000300: 1.593e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.412e0

FS
type: SiteQuality
SIO_000300: 3.062e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.41e-1

DP
type: SiteQuality
SIO_000300: 2.807918e6

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33468
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 351
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2977
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9016
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62700
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174536058256989e-4
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.887e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 4.087e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.749e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.493e0

VQSLOD
type: SiteQuality
SIO_000300: -1.136e0

DP
type: SiteQuality
SIO_000300: 2.808388e6

QD
type: SiteQuality
SIO_000300: 1.12e1

MQRankSum
type: SiteQuality
SIO_000300: -7.92e-1

GenotypeQuality
all individuals: 1367
bin: 7.75e1
variant carriers: 70

GenotypeQuality
all individuals: 53
bin: 1.75e1
variant carriers: 31

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 12

GenotypeQuality
all individuals: 171
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 51

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 44

GenotypeQuality
all individuals: 1355
bin: 6.75e1
variant carriers: 66

GenotypeQuality
all individuals: 45306
bin: 9.75e1
variant carriers: 29942

GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 78

GenotypeQuality
all individuals: 922
bin: 8.75e1
variant carriers: 50

Latino
type: Population
allele count: 2451
allele frequency: 2.13986380303824e-1
allele num: 11454
num of homozygotes: 287

South Asian
type: Population
allele count: 4259
allele frequency: 2.835175076554387e-1
allele num: 15022
num of homozygotes: 654

Other
type: Population
allele count: 310
allele frequency: 3.638497652582159e-1
allele num: 852
num of homozygotes: 69

European (Non-Finnish)
type: Population
allele count: 23834
allele frequency: 3.792565718286551e-1
allele num: 62844
num of homozygotes: 4523

East Asian
type: Population
allele count: 2436
allele frequency: 2.870610417157671e-1
allele num: 8486
num of homozygotes: 349

African
type: Population
allele count: 1127
allele frequency: 1.246405662464057e-1
allele num: 9042
num of homozygotes: 78

European (Finnish)
type: Population
allele count: 2683
allele frequency: 4.062689279224712e-1
allele num: 6604
num of homozygotes: 564

VQSLOD
type: SiteQuality
SIO_000300: 3.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.4e0

QD
type: SiteQuality
SIO_000300: 1.855e1

FS
type: SiteQuality
SIO_000300: 6.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

DP
type: SiteQuality
SIO_000300: 5.693848e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 1.21e-1

GenotypeQuality
all individuals: 111
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4642
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34910
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.174812030075188e-4
allele num: 8512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9054
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14180
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

DP
type: SiteQuality
SIO_000300: 2.793987e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.263e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.319e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 4823
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2881
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34908
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14064
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9058
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.622836160167862e-4
allele num: 11438
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.205744694492531e-5
allele num: 62388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.792388e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.892e0

VQSLOD
type: SiteQuality
SIO_000300: 3.89e-1

FS
type: SiteQuality
SIO_000300: 6.46e-1

MQ
type: SiteQuality
SIO_000300: 5.916e1

QD
type: SiteQuality
SIO_000300: 1.173e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-1

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2555
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9060
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.605239501733659e-5
allele num: 62296
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.067e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

DP
type: SiteQuality
SIO_000300: 2.786919e6

FS
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 5.941e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.108e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

GenotypeQuality
all individuals: 395
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4572
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1784
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2884
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34901
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 263
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13756
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.605239501733659e-5
allele num: 62296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.786919e6

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

FS
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

QD
type: SiteQuality
SIO_000300: 1.278e1

VQSLOD
type: SiteQuality
SIO_000300: -5.108e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.067e0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2610
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34901
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 2884
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.644736842105263e-3
allele num: 8512
num of homozygotes: 1

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.45e-1

QD
type: SiteQuality
SIO_000300: 1.336e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

FS
type: SiteQuality
SIO_000300: 1.196e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.33e0

DP
type: SiteQuality
SIO_000300: 2.785348e6

GenotypeQuality
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1546
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2886
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.607355257659048e-5
allele num: 62214
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9078
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.942e0

MQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.876e-1

FS
type: SiteQuality
SIO_000300: 6.26e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.47e-1

DP
type: SiteQuality
SIO_000300: 2.782482e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

GenotypeQuality
all individuals: 3143
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4192
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2411
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13372
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.610720958701115e-5
allele num: 62084
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.46e1

MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.22e0

DP
type: SiteQuality
SIO_000300: 2.778457e6

GenotypeQuality
all individuals: 2961
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13168
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.612279117760867e-5
allele num: 62024
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 8.179999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.87e-1

FS
type: SiteQuality
SIO_000300: 2.642e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.04e-1

QD
type: SiteQuality
SIO_000300: 1.129e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
all individuals: 54
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.102049812651532e-4
allele num: 9074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.080155138978668e-5
allele num: 61880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.222493887530562e-3
allele num: 818
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 2.14e-1

QD
type: SiteQuality
SIO_000300: 1.166e1

FS
type: SiteQuality
SIO_000300: 5.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.03e-1

DP
type: SiteQuality
SIO_000300: 2.771947e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2610
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.616658044490429e-5
allele num: 61856
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

FS
type: SiteQuality
SIO_000300: 5.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 2.769916e6

QD
type: SiteQuality
SIO_000300: 1.342e1

MQ
type: SiteQuality
SIO_000300: 5.971e1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.195e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.97e0

GenotypeQuality
all individuals: 411
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34891
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61788
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.982120051085569e-5
allele num: 12528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.437e0

MQRankSum
type: SiteQuality
SIO_000300: -7.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

DP
type: SiteQuality
SIO_000300: 2.768269e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
SIO_000300: 1.206e1

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2611
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2885
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1788
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.239705834710208e-5
allele num: 61734
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

FS
type: SiteQuality
SIO_000300: 5.27e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

QD
type: SiteQuality
SIO_000300: 1.276e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

DP
type: SiteQuality
SIO_000300: 2.765892e6

GenotypeQuality
all individuals: 282
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 150
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177856301531213e-4
allele num: 8490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12268
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

DP
type: SiteQuality
SIO_000300: 2.765892e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.3e0

FS
type: SiteQuality
SIO_000300: 5.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.276e1

GenotypeQuality
all individuals: 1788
bin: 8.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 29

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.177301624676242e-4
allele num: 8494
num of homozygotes: 0

South Asian
type: Population
allele count: 25
allele frequency: 2.050524934383202e-3
allele num: 12192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.620220349967596e-5
allele num: 61720
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.65e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.231e1

FS
type: SiteQuality
SIO_000300: 1.107e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.98e-1

DP
type: SiteQuality
SIO_000300: 2.767e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.620955715489853e-5
allele num: 61692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.433e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.21e0

QD
type: SiteQuality
SIO_000300: 1.054e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.061e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.185e0

DP
type: SiteQuality
SIO_000300: 2.763439e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1787
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GenotypeQuality
all individuals: 1548
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.621060822202049e-5
allele num: 61688
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9080
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: 6.04e-1

DP
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SIO_000300: 2.763445e6

FS
type: SiteQuality
SIO_000300: 5.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

QD
type: SiteQuality
SIO_000300: 1.237e1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 10472
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9042
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Latino
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allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61172
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele frequency: 2.359603586597452e-4
allele num: 8476
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -3.1e-3

ClippingRankSum
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MQRankSum
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MQ
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SIO_000300: 5.979e1

FS
type: SiteQuality
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VQSLOD
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QD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 10466
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.634414225941422e-5
allele num: 61184
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9044
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.181e0

VQSLOD
type: SiteQuality
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QD
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DP
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ClippingRankSum
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SIO_000300: -7.99e-1

MQ
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MQRankSum
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SIO_000300: -9.5e-2

ReadPosRankSum
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SIO_000300: 5.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

BaseQRankSum
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SIO_000300: 3.44e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9026
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.639236771359255e-5
allele num: 61004
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.392e1

DP
type: SiteQuality
SIO_000300: 2.743637e6

FS
type: SiteQuality
SIO_000300: 1.914e0

MQRankSum
type: SiteQuality
SIO_000300: 9.55e-1

InbreedingCoeff
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SIO_000300: -3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.38e-1

MQ
type: SiteQuality
SIO_000300: 5.987e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.703e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.629999999999999e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.639451767329005e-5
allele num: 60996
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.791981712678038e-5
allele num: 11374
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8472
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 776
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.242e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.621e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

DP
type: SiteQuality
SIO_000300: 2.74326e6

FS
type: SiteQuality
SIO_000300: 6.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.5e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.640635253970337e-5
allele num: 60952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.025430680885972e-4
allele num: 9752
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.74254e6

VQSLOD
type: SiteQuality
SIO_000300: 4.16e-1

FS
type: SiteQuality
SIO_000300: 6.78e-1

BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9466
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.791981712678038e-5
allele num: 11374
num of homozygotes: 0

African
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allele count: 8
allele frequency: 8.882966910948257e-4
allele num: 9006
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60826
num of homozygotes: 0

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
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allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.112594570538496e-4
allele num: 8988
num of homozygotes: 0

European (Finnish)
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allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 60754
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East Asian
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South Asian
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allele frequency: 3.234850118611171e-4
allele num: 9274
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.736317e6

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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FS
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VQSLOD
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QD
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BaseQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.291747588794891e-5
allele num: 60758
num of homozygotes: 0

South Asian
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ReadPosRankSum
type: SiteQuality
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DP
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
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FS
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ClippingRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele num: 60748
num of homozygotes: 0

South Asian
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Other
type: Population
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African
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East Asian
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allele count: 0
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Latino
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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MQ
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MQRankSum
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FS
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BaseQRankSum
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QD
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VQSLOD
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 3267
bin: 6.25e1
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GenotypeQuality
all individuals: 2593
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8988
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9204
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.940386008826823e-5
allele num: 60724
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.469e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

FS
type: SiteQuality
SIO_000300: 2.204e0

DP
type: SiteQuality
SIO_000300: 2.733794e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

GenotypeQuality
all individuals: 153
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
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GenotypeQuality
all individuals: 3139
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34881
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.647066574430938e-5
allele num: 60714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.037e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.86e-1

FS
type: SiteQuality
SIO_000300: 3.811e0

QD
type: SiteQuality
SIO_000300: 1.144e1

DP
type: SiteQuality
SIO_000300: 2.733363e6

MQ
type: SiteQuality
SIO_000300: 5.94e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.271e0

VQSLOD
type: SiteQuality
SIO_000300: -2.148e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.65e-1

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2873
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 27

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2323
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 19
allele frequency: 2.874432677760968e-3
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8988
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.317566454758062e-4
allele num: 60718
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.994e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

DP
type: SiteQuality
SIO_000300: 2.733263e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.96e0

QD
type: SiteQuality
SIO_000300: 1.399e1

GenotypeQuality
all individuals: 2314
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3135
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GenotypeQuality
all individuals: 3219
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8986
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.270111183780249e-4
allele num: 9174
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.95e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

FS
type: SiteQuality
SIO_000300: 4.606e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.732321e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

QD
type: SiteQuality
SIO_000300: 1.184e1

VQSLOD
type: SiteQuality
SIO_000300: 8.41e-1

GenotypeQuality
all individuals: 3104
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2922
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
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variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 3.25e1
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GenotypeQuality
all individuals: 632
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 165
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variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.297609233305853e-5
allele num: 60650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.041e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.248e0

DP
type: SiteQuality
SIO_000300: 2.727047e6

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

QD
type: SiteQuality
SIO_000300: 1.335e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 158
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variant carriers: 0

GenotypeQuality
all individuals: 186
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variant carriers: 0

GenotypeQuality
all individuals: 2486
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variant carriers: 0

GenotypeQuality
all individuals: 1687
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variant carriers: 0

GenotypeQuality
all individuals: 34862
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

DP
type: SiteQuality
SIO_000300: 2.726137e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.307e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.76e-1

QD
type: SiteQuality
SIO_000300: 5.09e0

GenotypeQuality
all individuals: 1468
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3321
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60676
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.114827201783724e-4
allele num: 8970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.258e1

MQRankSum
type: SiteQuality
SIO_000300: 5.77e-1

FS
type: SiteQuality
SIO_000300: 1.202e0

VQSLOD
type: SiteQuality
SIO_000300: -2.736e-1

MQ
type: SiteQuality
SIO_000300: 5.891e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.861e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

DP
type: SiteQuality
SIO_000300: 2.726173e6

GenotypeQuality
all individuals: 584
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3497
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.634814684700509e-4
allele num: 11386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6178088397075e-5
allele num: 61812
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.55e-1

QD
type: SiteQuality
SIO_000300: 1.57e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.377e0

VQSLOD
type: SiteQuality
SIO_000300: 2.49e-1

FS
type: SiteQuality
SIO_000300: 2.658e0

DP
type: SiteQuality
SIO_000300: 2.024113e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5511
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.25351379489849e-5
allele num: 61472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.291e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.075e2

FS
type: SiteQuality
SIO_000300: 1.4982e2

MQRankSum
type: SiteQuality
SIO_000300: -6.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.304e0

MQ
type: SiteQuality
SIO_000300: 5.827e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

DP
type: SiteQuality
SIO_000300: 2.016905e6

GenotypeQuality
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variant carriers: 20

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8397
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variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12594
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.211900022119e-4
allele num: 9042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.618437237003949e-5
allele num: 61788
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 1.881910138790873e-3
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11382
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.219512195121951e-3
allele num: 820
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

FS
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.199e1

DP
type: SiteQuality
SIO_000300: 2.0176e6

MQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.308e0

GenotypeQuality
all individuals: 135
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9763
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3499
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17042
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4200
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.829627309740057e-5
allele num: 12772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9040
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.470000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.57e-1

DP
type: SiteQuality
SIO_000300: 2.023965e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.87e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.967e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1