9-134394332-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394332
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394332
    reference: chr 9
allele count: 1
allele frequency: 8.399126490844953e-6
allele num: 119060
alternate allele: G
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2029C>G
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.808C>G
  hgvsp: ENSP00000440895.1:p.Arg270Gly
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1018C>G
  hgvsp: ENSP00000403032.2:p.Arg340Gly
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1474C>G
  hgvsp: ENSP00000404119.1:p.Arg492Gly
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1540C>G
  hgvsp: ENSP00000361302.3:p.Arg514Gly
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.337C>G
  hgvsp: ENSP00000361294.4:p.Arg113Gly
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-1977G>C
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1384C>G
  hgvsp: ENSP00000346748.4:p.Arg462Gly
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1474C>G
  hgvsp: ENSP00000385797.3:p.Arg492Gly
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1312C>G
  hgvsp: ENSP00000343034.7:p.Arg438Gly
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1123C>G
  hgvsp: ENSP00000384531.2:p.Arg375Gly
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: pathogenic
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.178C>G
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg514Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

9-134394333-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394333
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394333
    reference: chr 9
allele count: 4
allele frequency: 3.359142746771024e-5
allele num: 119078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1019G>A
  hgvsp: ENSP00000403032.2:p.Arg340Gln
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2030G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1541G>A
  hgvsp: ENSP00000361302.3:p.Arg514Gln
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1124G>A
  hgvsp: ENSP00000384531.2:p.Arg375Gln
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1385G>A
  hgvsp: ENSP00000346748.4:p.Arg462Gln
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.338G>A
  hgvsp: ENSP00000361294.4:p.Arg113Gln
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1475G>A
  hgvsp: ENSP00000385797.3:p.Arg492Gln
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.809G>A
  hgvsp: ENSP00000440895.1:p.Arg270Gln
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1475G>A
  hgvsp: ENSP00000404119.1:p.Arg492Gln
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1313G>A
  hgvsp: ENSP00000343034.7:p.Arg438Gln
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-1978C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.179G>A
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8935
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11367
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg514Gln
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

9-134394337-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394337
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394337
    reference: chr 9
allele count: 429
allele frequency: 3.604739097554828e-3
allele num: 119010
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2034C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1545C>T
  hgvsp: ENST00000372228.3:c.1545C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-1982G>A
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1389C>T
  hgvsp: ENST00000354713.4:c.1389C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.342C>T
  hgvsp: ENST00000372220.4:c.342C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1128C>T
  hgvsp: ENST00000404875.2:c.1128C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.183C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1479C>T
  hgvsp: ENST00000402686.3:c.1479C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.813C>T
  hgvsp: ENST00000541219.1:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1479C>T
  hgvsp: ENST00000423007.1:c.1479C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1317C>T
  hgvsp: ENST00000341012.7:c.1317C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  clinical significance: likely_benign
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1023C>T
  hgvsp: ENST00000419118.2:c.1023C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 8.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 6.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 8849
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 5.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 4.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 5891
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 18836
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2878
  bin: 9.75e1
  variant carriers: 33
genotype quality: GenotypeQuality
hgvs: p.Tyr515Tyr
num of homozygotes: 8
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

9-134394338-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394338
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394338
    reference: chr 9
allele count: 1
allele frequency: 8.406045628015669e-6
allele num: 118962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1318G>A
  hgvsp: ENSP00000343034.7:p.Gly440Ser
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.343G>A
  hgvsp: ENSP00000361294.4:p.Gly115Ser
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1546G>A
  hgvsp: ENSP00000361302.3:p.Gly516Ser
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1024G>A
  hgvsp: ENSP00000403032.2:p.Gly342Ser
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.184G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1480G>A
  hgvsp: ENSP00000404119.1:p.Gly494Ser
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1390G>A
  hgvsp: ENSP00000346748.4:p.Gly464Ser
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-1983C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.814G>A
  hgvsp: ENSP00000440895.1:p.Gly272Ser
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1480G>A
  hgvsp: ENSP00000385797.3:p.Gly494Ser
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2035G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1129G>A
  hgvsp: ENSP00000384531.2:p.Gly377Ser
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1337
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly516Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: G
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/9-134394340-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394340
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394340
    reference: chr 9
allele count: 1
allele frequency: 8.413400864897609e-6
allele num: 118858
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.345C>A
  hgvsp: ENST00000372220.4:c.345C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1482C>A
  hgvsp: ENST00000423007.1:c.1482C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-1985G>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1131C>A
  hgvsp: ENST00000404875.2:c.1131C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1548C>A
  hgvsp: ENST00000372228.3:c.1548C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.816C>A
  hgvsp: ENST00000541219.1:c.816C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1026C>A
  hgvsp: ENST00000419118.2:c.1026C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1320C>A
  hgvsp: ENST00000341012.7:c.1320C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2037C>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1482C>A
  hgvsp: ENST00000402686.3:c.1482C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.186C>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1392C>A
  hgvsp: ENST00000354713.4:c.1392C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8809
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Gly516Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

9-134394340-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394340
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394340
    reference: chr 9
allele count: 3
allele frequency: 2.524020259469283e-5
allele num: 118858
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-1985G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.186C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1482C>T
  hgvsp: ENST00000402686.3:c.1482C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1548C>T
  hgvsp: ENST00000372228.3:c.1548C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1131C>T
  hgvsp: ENST00000404875.2:c.1131C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.816C>T
  hgvsp: ENST00000541219.1:c.816C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.345C>T
  hgvsp: ENST00000372220.4:c.345C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1482C>T
  hgvsp: ENST00000423007.1:c.1482C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1320C>T
  hgvsp: ENST00000341012.7:c.1320C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1026C>T
  hgvsp: ENST00000419118.2:c.1026C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2037C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1392C>T
  hgvsp: ENST00000354713.4:c.1392C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18931
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3290
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8809
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly516Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS

9-134394341-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394341
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394341
    reference: chr 9
allele count: 1
allele frequency: 8.418358756776778e-6
allele num: 118788
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.346G>A
  hgvsp: ENSP00000361294.4:p.Ala116Thr
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1027G>A
  hgvsp: ENSP00000403032.2:p.Ala343Thr
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1549G>A
  hgvsp: ENSP00000361302.3:p.Ala517Thr
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.187G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2038G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1321G>A
  hgvsp: ENSP00000343034.7:p.Ala441Thr
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1393G>A
  hgvsp: ENSP00000346748.4:p.Ala465Thr
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.817G>A
  hgvsp: ENSP00000440895.1:p.Ala273Thr
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1483G>A
  hgvsp: ENSP00000385797.3:p.Ala495Thr
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1132G>A
  hgvsp: ENSP00000384531.2:p.Ala378Thr
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-1986C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1483G>A
  hgvsp: ENSP00000404119.1:p.Ala495Thr
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala517Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD

9-134394342-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394342
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394342
    reference: chr 9
allele count: 2
allele frequency: 1.686966496845373e-5
allele num: 118556
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.818C>T
  hgvsp: ENSP00000440895.1:p.Ala273Val
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1550C>T
  hgvsp: ENSP00000361302.3:p.Ala517Val
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1028C>T
  hgvsp: ENSP00000403032.2:p.Ala343Val
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1133C>T
  hgvsp: ENSP00000384531.2:p.Ala378Val
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1484C>T
  hgvsp: ENSP00000404119.1:p.Ala495Val
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-1987G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1484C>T
  hgvsp: ENSP00000385797.3:p.Ala495Val
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2039C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1322C>T
  hgvsp: ENSP00000343034.7:p.Ala441Val
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.188C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.347C>T
  hgvsp: ENSP00000361294.4:p.Ala116Val
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1394C>T
  hgvsp: ENSP00000346748.4:p.Ala465Val
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18644
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8571
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala517Val
num of homozygotes: 0
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

9-134394343-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394343
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394343
    reference: chr 9
allele count: 6
allele frequency: 5.060558010863331e-5
allele num: 118564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1029G>A
  hgvsp: ENST00000419118.2:c.1029G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.189G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1485G>A
  hgvsp: ENST00000423007.1:c.1485G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-1988C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1485G>A
  hgvsp: ENST00000402686.3:c.1485G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2040G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1395G>A
  hgvsp: ENST00000354713.4:c.1395G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.348G>A
  hgvsp: ENST00000372220.4:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1323G>A
  hgvsp: ENST00000341012.7:c.1323G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1134G>A
  hgvsp: ENST00000404875.2:c.1134G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.819G>A
  hgvsp: ENST00000541219.1:c.819G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1551G>A
  hgvsp: ENST00000372228.3:c.1551G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11252
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8573
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1551G>A
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

9-134394352-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394352
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394352
    reference: chr 9
allele count: 2
allele frequency: 1.694570595811022e-5
allele num: 118024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1324+8C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.190+8C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.820+8C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1486+8C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1396+8C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1552+8C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.349+8C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2041+8C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1030+8C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1486+8C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-1997G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1135+8C>T
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18164
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1552+8C>T
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

9-134394353-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394353
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394353
    reference: chr 9
allele count: 7
allele frequency: 5.930494603249911e-5
allele num: 118034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2041+9G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1486+9G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-1998C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.349+9G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1396+9G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.820+9G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1030+9G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1552+9G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1324+9G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.190+9G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1486+9G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1135+9G>A
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18171
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

9-134394354-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394354
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394354
    reference: chr 9
allele count: 15
allele frequency: 1.271380380057975e-4
allele num: 117982
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1135+10C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2041+10C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1486+10C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1396+10C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.349+10C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1486+10C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-1999G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.820+10C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1552+10C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1324+10C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.190+10C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1030+10C>T
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11031
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8178
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18109
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

9-134394355-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394355
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394355
    reference: chr 9
allele count: 1
allele frequency: 8.482339768601771e-6
allele num: 117892
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-2000C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1135+11G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1486+11G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.820+11G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1030+11G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1324+11G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.190+11G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1552+11G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2041+11G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1396+11G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.349+11G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1486+11G>A
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11000
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18016
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2851
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

9-134394357-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394357
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394357
    reference: chr 9
allele count: 11
allele frequency: 9.375106535301538e-5
allele num: 117332
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.820+13C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1135+13C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.349+13C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-2002G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1396+13C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.190+13C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1552+13C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1324+13C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1030+13C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1486+13C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1486+13C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2041+13C>T
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10939
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

9-134394358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394358
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394358
    reference: chr 9
allele count: 104
allele frequency: 8.86041439476554e-4
allele num: 117376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1135+14G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1486+14G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.820+14G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1030+14G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-2003C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1486+14G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1552+14G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1396+14G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.190+14G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2041+14G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.349+14G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1324+14G>A
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10931
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17740
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7831
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 4.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

9-134394358-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394358
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394358
    reference: chr 9
allele count: 1
allele frequency: 8.519629225736096e-6
allele num: 117376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.190+14G>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1030+14G>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2041+14G>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1486+14G>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1552+14G>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-2003C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.820+14G>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1324+14G>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1396+14G>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.349+14G>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1135+14G>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1486+14G>C
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17740
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2856
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

9-134394366-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394366
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394366
    reference: chr 9
allele count: 6
allele frequency: 5.140507196710076e-5
allele num: 116720
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1486+22C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.349+22C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.190+22C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2041+22C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.820+22C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-2011G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1135+22C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1486+22C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1552+22C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1396+22C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1030+22C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1324+22C>T
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3047
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1997
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5792
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

9-134394367-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394367
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394367
    reference: chr 9
allele count: 1
allele frequency: 8.579714123925391e-6
allele num: 116554
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1135+23G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-2012C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.349+23G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1552+23G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1486+23G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1486+23G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1030+23G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.820+23G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2041+23G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1324+23G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.190+23G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1396+23G>A
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1816
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1994
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD

9-134394370-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394370
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394370
    reference: chr 9
allele count: 3
allele frequency: 2.577142464435434e-5
allele num: 116408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.820+26G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1552+26G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-2015C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2041+26G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1486+26G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1324+26G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.190+26G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1135+26G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1396+26G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1030+26G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.349+26G>A
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1486+26G>A
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16818
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

9-134394384-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394384
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394384
    reference: chr 9
allele count: 1
allele frequency: 8.64020460004493e-6
allele num: 115738
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1135+40C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1552+40C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1030+40C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2041+40C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.820+40C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1486+40C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1486+40C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.349+40C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.190+40C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-2029G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1396+40C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1324+40C>T
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7138
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1014
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13516
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

9-134394396-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394396
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394396
    reference: chr 9
allele count: 26
allele frequency: 2.259769155889306e-4
allele num: 115056
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-2041G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1135+52C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2041+52C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.190+52C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.349+52C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1552+52C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.820+52C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1030+52C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1486+52C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1324+52C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1486+52C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1396+52C>T
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11338
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2160
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6095
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10357
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8499
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2850
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/10-64954150-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954150
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954150
    reference: chr 10
allele count: 1
allele frequency: 8.296827293243064e-6
allele num: 120528
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-15T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-15T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-15T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-15T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.305T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-15T>G
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7443
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4369
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12649
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21680
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

10-64954152-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954152
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954152
    reference: chr 10
allele count: 12
allele frequency: 9.958175662218681e-5
allele num: 120504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-17G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-17G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.303G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-17G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-17G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-17G>A
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7946
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14034
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4373
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12655
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3406
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21548
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5069
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

10-64954161-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954161
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954161
    reference: chr 10
allele count: 1
allele frequency: 8.314072398942449e-6
allele num: 120278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-26G>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.294G>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-26G>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-26G>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-26G>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-26G>C
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7926
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13848
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4371
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7392
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12643
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3364
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-64954163-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954163
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954163
    reference: chr 10
allele count: 3
allele frequency: 2.494678020223523e-5
allele num: 120256
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-28G>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-28G>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-28G>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.292G>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-28G>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-28G>T
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4368
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3004
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12644
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5027
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum

10-64954171-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954171
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954171
    reference: chr 10
allele count: 1
allele frequency: 8.333472224537076e-6
allele num: 119998
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-36C>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-36C>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.284C>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-36C>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-36C>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-36C>T
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1934
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4078
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1294
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15253
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3253
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

9-134394737-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394737
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394737
    reference: chr 9
allele count: 1
allele frequency: 4.839334107626791e-5
allele num: 20664
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-2382A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1397-39T>G
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.191-39T>G
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.350-39T>G
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.821-39T>G
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1553-39T>G
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2042-44T>G
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1031-39T>G
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1136-39T>G
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1325-39T>G
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1487-39T>G
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1487-39T>G
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

9-134394753-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394753
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394753
    reference: chr 9
allele count: 1
allele frequency: 4.835122328594914e-5
allele num: 20682
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1325-23T>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1553-23T>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2042-28T>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-2398A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1487-23T>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1397-23T>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1136-23T>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.191-23T>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.821-23T>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.350-23T>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1487-23T>C
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1031-23T>C
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27225
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum

9-134394759-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394759
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394759
    reference: chr 9
allele count: 1
allele frequency: 4.834187373102581e-5
allele num: 20686
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-2404G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.821-17C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1397-17C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2042-22C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1031-17C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.191-17C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1553-17C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1487-17C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1325-17C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1136-17C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.350-17C>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1487-17C>T
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

9-134394771-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134394771
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134394771
    reference: chr 9
allele count: 10
allele frequency: 4.829051574270813e-4
allele num: 20708
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.350-5G>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1397-5G>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1487-5G>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.191-5G>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2042-10G>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1325-5G>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1553-5G>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1031-5G>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.821-5G>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1487-5G>T
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.63-2416C>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1136-5G>T
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29603
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2258
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1553-5G>T
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

9-134395581-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 134395581
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 134395582
    reference: chr 9
allele count: 1
allele frequency: 8.378577652657685e-6
allele num: 119352
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000467848
  gene symbol: POMT1
  hgvsc: ENST00000467848.1:n.402+2dupT
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000343034
  ensembl transcript: ENST00000341012
  gene symbol: POMT1
  hgvsc: ENST00000341012.7:c.1536+2dupT
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000440895
  ensembl transcript: ENST00000541219
  gene symbol: POMT1
  hgvsc: ENST00000541219.1:c.918+709dupT
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361294
  ensembl transcript: ENST00000372220
  gene symbol: POMT1
  hgvsc: ENST00000372220.4:c.561+2dupT
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000346748
  ensembl transcript: ENST00000354713
  gene symbol: POMT1
  hgvsc: ENST00000354713.4:c.1608+2dupT
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000130714
  ensembl transcript: ENST00000485278
  gene symbol: POMT1
  hgvsc: ENST00000485278.1:n.2248+2dupT
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000384531
  ensembl transcript: ENST00000404875
  gene symbol: POMT1
  hgvsc: ENST00000404875.2:c.1347+2dupT
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000361302
  ensembl transcript: ENST00000372228
  gene symbol: POMT1
  hgvsc: ENST00000372228.3:c.1764+2dupT
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000230289
  ensembl transcript: ENST00000415423
  gene symbol: RP11-334J6.6
  hgvsc: ENST00000415423.1:n.62+1973dupA
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000404119
  ensembl transcript: ENST00000423007
  gene symbol: POMT1
  hgvsc: ENST00000423007.1:c.1698+2dupT
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000385797
  ensembl transcript: ENST00000402686
  gene symbol: POMT1
  hgvsc: ENST00000402686.3:c.1698+2dupT
  variant of: http://identifiers.org/hgnc/9202
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000130714
  ensembl protein: ENSP00000403032
  ensembl transcript: ENST00000419118
  gene symbol: POMT1
  hgvsc: ENST00000419118.2:c.1242+2dupT
  variant of: http://identifiers.org/hgnc/9202
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4577
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1764+2dupT
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

10-64954177-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954177
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954177
    reference: chr 10
allele count: 3
allele frequency: 2.505930702662969e-5
allele num: 119716
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.278A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-42A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-42A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-42A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-42A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-42A>G
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4316
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7638
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13149
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1623
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6175
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4876
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2493
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3177
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12204
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

10-64954178-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954178
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954178
    reference: chr 10
allele count: 1
allele frequency: 8.350172848577966e-6
allele num: 119758
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-43T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-43T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.277T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-43T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-43T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-43T>C
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7623
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12877
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12626
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4075
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6247
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3193
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2617
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1234
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

10-64954181-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954181
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954181
    reference: chr 10
allele count: 1
allele frequency: 8.370442294170824e-6
allele num: 119468
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-46A>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-46A>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-46A>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.274A>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-46A>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-46A>T
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11350
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12218
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5895
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10190
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4061
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1971
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

10-64954182-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954182
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954182
    reference: chr 10
allele count: 4
allele frequency: 3.346496218459273e-5
allele num: 119528
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-47T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-47T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-47T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.273T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-47T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-47T>C
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12274
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8961
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2308
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10886
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1544
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3073
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP

10-64954183-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954183
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954183
    reference: chr 10
allele count: 7
allele frequency: 5.852255626525767e-5
allele num: 119612
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-48A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-48A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-48A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-48A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.272A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-48A>G
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12347
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11278
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5939
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11435
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3172
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

10-64954183-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954183
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954184
    reference: chr 10
allele count: 1
allele frequency: 8.360365180751095e-6
allele num: 119612
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-49dupT
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-49dupT
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-49dupT
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-49dupT
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-49dupT
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.271dupT
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7589
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5085
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2303
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 352
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1173
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 778
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3001
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4071
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/10-64954185-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954185
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954185
    reference: chr 10
allele count: 8
allele frequency: 6.698708823874198e-5
allele num: 119426
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-50T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.270T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-50T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-50T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-50T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-50T>G
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5059
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12213
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9245
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7578
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 12629
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2321
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5871
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3151
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2624
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4065
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-64954186-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954186
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954186
    reference: chr 10
allele count: 1
allele frequency: 8.375630266177531e-6
allele num: 119394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-51T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-51T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.269T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-51T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-51T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-51T>C
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9301
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5858
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2999
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2994
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4894
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1080
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1562
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum

10-64954187-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64954187
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64954187
    reference: chr 10
allele count: 25
allele frequency: 2.095381778560054e-4
allele num: 119310
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1285-52A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5099-52A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000171988
  ensembl transcript: ENST00000483298
  gene symbol: JMJD1C
  hgvsc: ENST00000483298.1:n.268A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4988-52A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5645-52A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*343-52A>G
  variant of: http://identifiers.org/hgnc/12313
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2207
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5027
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7573
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4317
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9290
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11106
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12218
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3144
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8793
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4908
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3215
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2306
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1978
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2997
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1754
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

10-64957122-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957122
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957122
    reference: chr 10
allele count: 36
allele frequency: 3.176844334627603e-4
allele num: 113320
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4987+49A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*342+49A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5644+49A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5098+49A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1284+49A>G
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7108
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10470
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4186
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11905
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2099
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

10-64957122-TAAAGAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957122
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957116
    reference: chr 10
allele count: 1
allele frequency: 8.824567596187787e-6
allele num: 113320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1284+43_1284+48delTTCTTT
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4987+43_4987+48delTTCTTT
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5644+43_5644+48delTTCTTT
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5098+43_5098+48delTTCTTT
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*342+43_*342+48delTTCTTT
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10470
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1829
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2631
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12607
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2098
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: TAAAGAA
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-64957123-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957123
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957123
    reference: chr 10
allele count: 1
allele frequency: 8.824723344923136e-6
allele num: 113318
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4987+48T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5644+48T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*342+48T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5098+48T>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1284+48T>C
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7117
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12583
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12688
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2627
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1976
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1455
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum

http://identifiers.org/exac.variant/10-64957131-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957131
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957131
    reference: chr 10
allele count: 2
allele frequency: 1.758798388940676e-5
allele num: 113714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4987+40T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1284+40T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5098+40T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5644+40T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*342+40T>G
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11379
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2045
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12593
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4187
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

10-64957131-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957131
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957130
    reference: chr 10
allele count: 5
allele frequency: 4.396995972351689e-5
allele num: 113714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4987+39delA
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5098+39delA
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*342+39delA
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1284+39delA
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5644+39delA
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11379
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2604
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3816
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11030
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4706
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1714
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3809
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4187
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: AT
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

10-64957143-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957143
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957143
    reference: chr 10
allele count: 2
allele frequency: 1.722504521574369e-5
allele num: 116110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4987+28A>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5644+28A>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1284+28A>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5098+28A>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*342+28A>T
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4716
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15763
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2607
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11699
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2972
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2296
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2714
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ

10-64957145-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957145
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957145
    reference: chr 10
allele count: 1
allele frequency: 8.568833439015613e-6
allele num: 116702
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5644+26G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5098+26G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*342+26G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4987+26G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1284+26G>A
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4719
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11792
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7172
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2608
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6213
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12594
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4258
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

http://identifiers.org/exac.variant/10-64957147-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957147
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957147
    reference: chr 10
allele count: 1
allele frequency: 8.51469636592759e-6
allele num: 117444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4987+24T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*342+24T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5644+24T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1284+24T>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5098+24T>G
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4262
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2974
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3849
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22927
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/10-64957166-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957166
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957166
    reference: chr 10
allele count: 1
allele frequency: 8.295726041943191e-6
allele num: 120544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4987+5G>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1284+5G>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*342+5G>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5098+5G>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5644+5G>T
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18506
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2974
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2767
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 7
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
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genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 3859
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2061
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
hgvs: c.5644+5G>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

10-64957167-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957167
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957167
    reference: chr 10
allele count: 28
allele frequency: 2.322610614330507e-4
allele num: 120554
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*342+4G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4987+4G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5098+4G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1284+4G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5644+4G>A
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7184
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18490
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1475
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12335
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9843
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2617
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4294
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2974
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 2762
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genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
hgvs: c.5644+4G>A
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

10-64957208-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957208
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957208
    reference: chr 10
allele count: 1
allele frequency: 8.282670995742708e-6
allele num: 120734
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1247A>G
  hgvsp: ENST00000327520.7:c.1247A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4950A>G
  hgvsp: ENST00000402544.1:c.4950A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*305A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5607A>G
  hgvsp: ENST00000399262.2:c.5607A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5061A>G
  hgvsp: ENST00000542921.1:c.5061A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7182
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12595
  bin: 9.75e1
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
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genotype quality: GenotypeQuality
  all individuals: 3864
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4297
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 25307
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2060
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Leu1869Leu
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD

10-64957256-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957256
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957256
    reference: chr 10
allele count: 1
allele frequency: 8.298204268596276e-6
allele num: 120508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*257G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4902G>A
  hgvsp: ENST00000402544.1:c.4902G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1199G>A
  hgvsp: ENST00000327520.7:c.1199G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5013G>A
  hgvsp: ENST00000542921.1:c.5013G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5559G>A
  hgvsp: ENST00000399262.2:c.5559G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9893
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12474
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2756
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4295
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3861
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6434
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu1853Leu
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD

10-64957262-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957262
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957262
    reference: chr 10
allele count: 1
allele frequency: 8.308408109006315e-6
allele num: 120360
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1193A>G
  hgvsp: ENST00000327520.7:c.1193A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5553A>G
  hgvsp: ENST00000399262.2:c.5553A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*251A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.5007A>G
  hgvsp: ENST00000542921.1:c.5007A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4896A>G
  hgvsp: ENST00000402544.1:c.4896A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3860
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24544
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4293
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2059
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6426
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala1851Ala
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

10-64957287-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957287
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957287
    reference: chr 10
allele count: 4
allele frequency: 3.355254328278084e-5
allele num: 119216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4982G>A
  hgvsp: ENSP00000444682.1:p.Arg1661Gln
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1168G>A
  hgvsp: ENSP00000335929.5:p.Arg390Gln
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4871G>A
  hgvsp: ENSP00000384990.1:p.Arg1624Gln
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5528G>A
  hgvsp: ENSP00000382204.2:p.Arg1843Gln
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*226G>A
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9822
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7184
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12049
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2740
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12594
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23307
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg1843Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

10-64957288-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957288
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957288
    reference: chr 10
allele count: 1
allele frequency: 8.397010664203544e-6
allele num: 119090
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4870C>T
  hgvsp: ENSP00000384990.1:p.Arg1624Trp
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*225C>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5527C>T
  hgvsp: ENSP00000382204.2:p.Arg1843Trp
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1167C>T
  hgvsp: ENSP00000335929.5:p.Arg390Trp
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4981C>T
  hgvsp: ENSP00000444682.1:p.Arg1661Trp
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7186
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12016
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16951
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6258
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2730
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23259
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4273
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg1843Trp
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

10-64957301-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957301
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957301
    reference: chr 10
allele count: 1
allele frequency: 8.462527926342156e-6
allele num: 118168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1154A>C
  hgvsp: ENST00000327520.7:c.1154A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4968A>C
  hgvsp: ENST00000542921.1:c.4968A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*212A>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5514A>C
  hgvsp: ENST00000399262.2:c.5514A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4857A>C
  hgvsp: ENST00000402544.1:c.4857A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7175
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2320
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2705
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4252
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22516
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12593
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala1838Ala
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

10-64957305-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957305
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957305
    reference: chr 10
allele count: 1
allele frequency: 8.497187430960352e-6
allele num: 117686
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5510G>A
  hgvsp: ENSP00000382204.2:p.Arg1837Lys
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1150G>A
  hgvsp: ENSP00000335929.5:p.Arg384Lys
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4964G>A
  hgvsp: ENSP00000444682.1:p.Arg1655Lys
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*208G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4853G>A
  hgvsp: ENSP00000384990.1:p.Arg1618Lys
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7179
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9723
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2975
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6096
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2697
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg1837Lys
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD

10-64957318-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957318
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957318
    reference: chr 10
allele count: 7
allele frequency: 6.010853884728996e-5
allele num: 116456
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5497A>G
  hgvsp: ENSP00000382204.2:p.Ile1833Val
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1137A>G
  hgvsp: ENSP00000335929.5:p.Ile380Val
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4840A>G
  hgvsp: ENSP00000384990.1:p.Ile1614Val
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4951A>G
  hgvsp: ENSP00000444682.1:p.Ile1651Val
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*195A>G
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12598
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3727
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3846
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6006
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile1833Val
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

10-64957318-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957318
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957318
    reference: chr 10
allele count: 1
allele frequency: 8.586934121041424e-6
allele num: 116456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4951A>C
  hgvsp: ENSP00000444682.1:p.Ile1651Leu
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1137A>C
  hgvsp: ENSP00000335929.5:p.Ile380Leu
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5497A>C
  hgvsp: ENSP00000382204.2:p.Ile1833Leu
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4840A>C
  hgvsp: ENSP00000384990.1:p.Ile1614Leu
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*195A>C
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11251
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2130
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7173
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3727
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12598
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2974
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3846
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4232
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile1833Leu
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS

10-64957330-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957330
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957330
    reference: chr 10
allele count: 5
allele frequency: 4.361251155731556e-5
allele num: 114646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1132-7A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5492-7A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*190-7A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4946-7A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4835-7A>G
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3842
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 585
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4227
  bin: 7.75e1
  variant carriers: 0
hgvs: c.5492-7A>G
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ

10-64957351-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957351
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957351
    reference: chr 10
allele count: 2
allele frequency: 1.790863016887838e-5
allele num: 111678
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4946-28T>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1132-28T>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5492-28T>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*190-28T>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4835-28T>A
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9615
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2613
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10641
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13508
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4221
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2645
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5846
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2911
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1945
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18803
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

10-64957360-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957360
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957360
    reference: chr 10
allele count: 1
allele frequency: 9.047481181239142e-6
allele num: 110528
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1132-37G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5492-37G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4835-37G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4946-37G>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*190-37G>A
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7148
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2024
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9387
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10246
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2966
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 686
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12581
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3820
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17030
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ

10-64957370-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957370
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957370
    reference: chr 10
allele count: 46
allele frequency: 4.185166314870078e-4
allele num: 109912
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*190-47A>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1132-47A>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4835-47A>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5492-47A>C
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4946-47A>C
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7087
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1473
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13025
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9454
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 8951
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2043
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5517
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 1.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 588
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3791
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4140
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2241
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13480
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

10-64957374-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64957374
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64957374
    reference: chr 10
allele count: 1
allele frequency: 9.123754607496077e-6
allele num: 109604
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*190-51T>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5492-51T>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1132-51T>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4946-51T>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4835-51T>A
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7084
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2204
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12570
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 440
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2977
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4122
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2033
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3779
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2557
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1443
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-64958228-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64958228
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64958228
    reference: chr 10
allele count: 1
allele frequency: 8.946464357286e-6
allele num: 111776
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1132-905A>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4945+45A>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5491+45A>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*189+45A>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4834+45A>T
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4103
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1450
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 7.25e1
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genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

10-64958240-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64958240
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64958240
    reference: chr 10
allele count: 1
allele frequency: 8.918219923303308e-6
allele num: 112130
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1132-917A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*189+33A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5491+33A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4945+33A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4834+33A>G
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3558
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3538
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12845
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8166
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 34342
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genotype quality: GenotypeQuality
  all individuals: 3190
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 99
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
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genotype quality: GenotypeQuality
  all individuals: 547
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

10-64958241-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64958241
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64958241
    reference: chr 10
allele count: 4
allele frequency: 3.562712649411262e-5
allele num: 112274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1132-918A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4945+32A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4834+32A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5491+32A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*189+32A>G
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24741
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3266
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4096
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8175
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34386
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

10-64958242-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64958242
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64958242
    reference: chr 10
allele count: 1
allele frequency: 8.914721771533511e-6
allele num: 112174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*189+31C>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4834+31C>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1132-919C>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5491+31C>T
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4945+31C>T
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7913
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3536
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 707
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ

10-64958252-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64958252
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64958252
    reference: chr 10
allele count: 3
allele frequency: 2.650083035935126e-5
allele num: 113204
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1132-929A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*189+21A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5491+21A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4945+21A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4834+21A>G
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3332
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24841
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8189
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1438
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35224
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

10-64958253-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64958253
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64958253
    reference: chr 10
allele count: 1
allele frequency: 8.825034858887692e-6
allele num: 113314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*189+20C>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1132-930C>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4945+20C>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5491+20C>A
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4834+20C>A
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24851
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12878
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2414
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35316
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1437
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2159
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD

10-64958255-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 64958255
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 64958255
    reference: chr 10
allele count: 1
allele frequency: 8.801112460615022e-6
allele num: 113622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000384990
  ensembl transcript: ENST00000402544
  gene symbol: JMJD1C
  hgvsc: ENST00000402544.1:c.4834+18A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000444682
  ensembl transcript: ENST00000542921
  gene symbol: JMJD1C
  hgvsc: ENST00000542921.1:c.4945+18A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382195
  ensembl transcript: ENST00000399251
  gene symbol: JMJD1C
  hgvsc: ENST00000399251.1:c.*189+18A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000382204
  ensembl transcript: ENST00000399262
  gene symbol: JMJD1C
  hgvsc: ENST00000399262.2:c.5491+18A>G
  variant of: http://identifiers.org/hgnc/12313
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000171988
  ensembl protein: ENSP00000335929
  ensembl transcript: ENST00000327520
  gene symbol: JMJD1C
  hgvsc: ENST00000327520.7:c.1132-932A>G
  variant of: http://identifiers.org/hgnc/12313
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3537
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8208
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4085
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2160
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeDepth
all individuals: 420
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1239
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2016
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 449
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 18950
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 595
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12096
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 63
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2113
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7740
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

African
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allele count: 1
allele frequency: 9.899029895070283e-5
allele num: 10102
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65124
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.033e0

VQSLOD
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SIO_000300: 1.24e0

InbreedingCoeff
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SIO_000300: 1.3e-3

MQRankSum
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SIO_000300: 3.6e-1

ReadPosRankSum
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SIO_000300: 4.91e-1

ClippingRankSum
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SIO_000300: -5.94e-1

BaseQRankSum
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SIO_000300: 2.85e0

MQ
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SIO_000300: 5.909e1

QD
type: SiteQuality
SIO_000300: 1.525e1

DP
type: SiteQuality
SIO_000300: 2.196527e6

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 2
allele frequency: 2.338634237605239e-4
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.070404372255826e-5
allele num: 65138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.19e-1

MQ
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SIO_000300: 5.967e1

DP
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SIO_000300: 2.196184e6

BaseQRankSum
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SIO_000300: -1.984e0

MQRankSum
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SIO_000300: 5.610000000000001e-1

VQSLOD
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SIO_000300: 2.08e0

ReadPosRankSum
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SIO_000300: 6.02e-1

FS
type: SiteQuality
SIO_000300: 4.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

QD
type: SiteQuality
SIO_000300: 1.264e1

GenotypeDepth
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variant carriers: 32

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 417

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 23399
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variant carriers: 2

Other
type: Population
allele count: 3
allele frequency: 3.409090909090909e-3
allele num: 880
num of homozygotes: 0

Latino
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allele count: 20
allele frequency: 1.740038280842178e-3
allele num: 11494
num of homozygotes: 0

African
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allele count: 374
allele frequency: 3.705171388943927e-2
allele num: 10094
num of homozygotes: 8

European (Finnish)
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allele count: 19
allele frequency: 2.96411856474259e-3
allele num: 6410
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8550
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European (Non-Finnish)
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allele count: 13
allele frequency: 1.996927803379416e-4
allele num: 65100
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.205521e6

BaseQRankSum
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SIO_000300: 1.85e0

MQ
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SIO_000300: 5.968e1

MQRankSum
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SIO_000300: 1.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-1

InbreedingCoeff
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SIO_000300: 2.21e-2

FS
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SIO_000300: 5.89e-1

ClippingRankSum
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SIO_000300: -2.33e-1

VQSLOD
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SIO_000300: 4.81e0

QD
type: SiteQuality
SIO_000300: 1.392e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2111
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65072
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.703220191470844e-5
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.191544e6

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
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SIO_000300: 1.03e0

FS
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SIO_000300: 4.114e0

ReadPosRankSum
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SIO_000300: 1.33e0

ClippingRankSum
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SIO_000300: -1.271e0

QD
type: SiteQuality
SIO_000300: 1.425e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53803562090498e-5
allele num: 65018
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

DP
type: SiteQuality
SIO_000300: 2.189274e6

MQRankSum
type: SiteQuality
SIO_000300: 8.79e-1

ClippingRankSum
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QD
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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SIO_000300: 1.2e-3

ReadPosRankSum
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SIO_000300: -2.98e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.61410686271494e-5
allele num: 65018
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 1.2e-3

MQRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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DP
type: SiteQuality
SIO_000300: 2.189274e6

ReadPosRankSum
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.948e1

FS
type: SiteQuality
SIO_000300: 1.6403e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 364
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10056
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539124545958259e-5
allele num: 64972
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.11e-1

ClippingRankSum
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FS
type: SiteQuality
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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DP
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MQRankSum
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VQSLOD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 187
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.716875871687587e-5
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64836
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

FS
type: SiteQuality
SIO_000300: 2.976e0

DP
type: SiteQuality
SIO_000300: 2.181367e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

QD
type: SiteQuality
SIO_000300: 1.284e1

VQSLOD
type: SiteQuality
SIO_000300: 9.55e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6374
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.864414731409805e-4
allele num: 8526
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.00080064051241e-4
allele num: 9992
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64848
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 2.921e0

QD
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ReadPosRankSum
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DP
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SIO_000300: 2.181381e6

BaseQRankSum
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SIO_000300: -2.075e0

InbreedingCoeff
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SIO_000300: -1.1e-3

ClippingRankSum
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SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55053183241852e-5
allele num: 64494
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6344
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

QD
type: SiteQuality
SIO_000300: 1.225e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

DP
type: SiteQuality
SIO_000300: 2.166843e6

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 8.56e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeDepth
all individuals: 2854
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2634
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
all individuals: 2111
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.037956793862306e-4
allele num: 9906
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.823043266893534e-4
allele num: 16456
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

DP
type: SiteQuality
SIO_000300: 2.166444e6

FS
type: SiteQuality
SIO_000300: 6.51e-1

QD
type: SiteQuality
SIO_000300: 1.164e1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
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SIO_000300: -1.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

BaseQRankSum
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SIO_000300: -2.032e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4168
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 13

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.171417935912151e-4
allele num: 64474
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.739730816290858e-5
allele num: 11442
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
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QD
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SIO_000300: 1.299e1

ClippingRankSum
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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FS
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SIO_000300: 2.232e0

BaseQRankSum
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InbreedingCoeff
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SIO_000300: -1.6e-3

MQ
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SIO_000300: 5.963e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

African
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allele frequency: 1.012965964343598e-4
allele num: 9872
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.05e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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FS
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ReadPosRankSum
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DP
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QD
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
type: SiteQuality
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GenotypeDepth
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2110
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.405196102922808e-4
allele num: 64048
num of homozygotes: 0

African
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Other
type: Population
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South Asian
type: Population
allele count: 2
allele frequency: 1.216693028348948e-4
allele num: 16438
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-1

MQRankSum
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BaseQRankSum
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
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QD
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DP
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MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
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SIO_000300: 2.56e-1

GenotypeDepth
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 102

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 722
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 10
allele frequency: 6.084945843981989e-4
allele num: 16434
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.121901249743905e-4
allele num: 9762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

Latino
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allele count: 10
allele frequency: 8.756567425569177e-4
allele num: 11420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
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allele count: 79
allele frequency: 1.232910918284537e-3
allele num: 64076
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

FS
type: SiteQuality
SIO_000300: 1.404e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.717e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.987e1

DP
type: SiteQuality
SIO_000300: 2.154919e6

GenotypeDepth
all individuals: 431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12009
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64076
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6324
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.084945843981989e-5
allele num: 16434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.44e-1

BaseQRankSum
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SIO_000300: -1.717e0

FS
type: SiteQuality
SIO_000300: 1.404e0

MQ
type: SiteQuality
SIO_000300: 5.987e1

MQRankSum
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SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

DP
type: SiteQuality
SIO_000300: 2.154919e6

QD
type: SiteQuality
SIO_000300: 1.282e1

VQSLOD
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SIO_000300: 4.38e0

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 5

GenotypeQuality
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bin: 9.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.845106222738256e-5
allele num: 63734
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.086427267194157e-5
allele num: 16430
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
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SIO_000300: -1.8e-3

FS
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QD
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MQRankSum
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SIO_000300: -1.47e-1

BaseQRankSum
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SIO_000300: 2.17e0

MQ
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SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 2.13277e6

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.07e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6992
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.570746418698165e-5
allele num: 63664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

FS
type: SiteQuality
SIO_000300: 1.586e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.31e-1

BaseQRankSum
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SIO_000300: -4.48e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 2.126685e6

MQ
type: SiteQuality
SIO_000300: 5.947e1

QD
type: SiteQuality
SIO_000300: 1.055e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.718464926077383e-5
allele num: 63580
num of homozygotes: 0

East Asian
type: Population
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allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16418
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9488
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.0e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.556e0

DP
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-3

ReadPosRankSum
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MQ
type: SiteQuality
SIO_000300: 5.955e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 1.414e1

GenotypeDepth
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8420
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11364
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9336
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.581928053912108e-5
allele num: 63214
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 2.063139e6

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2507
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GenotypeQuality
all individuals: 3756
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.830801836806782e-5
allele num: 11324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

Other
type: Population
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allele frequency: 1.173708920187793e-3
allele num: 852
num of homozygotes: 0

South Asian
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East Asian
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African
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allele frequency: 2.280625543006082e-3
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.77661369932809e-5
allele num: 62806
num of homozygotes: 0

FS
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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InbreedingCoeff
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MQ
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501997656883655e-5
allele num: 66578
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.21e-1

DP
type: SiteQuality
SIO_000300: 2.208245e6

VQSLOD
type: SiteQuality
SIO_000300: -3.62e-2

QD
type: SiteQuality
SIO_000300: 1.446e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.76e0

FS
type: SiteQuality
SIO_000300: 3.542e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.118e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

South Asian
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allele count: 12
allele frequency: 7.271845836868258e-4
allele num: 16502
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

VQSLOD
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SIO_000300: 3.19e0

QD
type: SiteQuality
SIO_000300: 1.299e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.79e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

FS
type: SiteQuality
SIO_000300: 8.159999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

DP
type: SiteQuality
SIO_000300: 2.207096e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.834e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66444
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.205e0

InbreedingCoeff
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SIO_000300: 7.1e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQ
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SIO_000300: 5.942e1

BaseQRankSum
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SIO_000300: -1.718e0

VQSLOD
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SIO_000300: -1.543e0

DP
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SIO_000300: 2.187233e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.170411985018727e-4
allele num: 8544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.011322572874006e-5
allele num: 66416
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.968e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 2.179524e6

FS
type: SiteQuality
SIO_000300: 1.284e0

QD
type: SiteQuality
SIO_000300: 1.403e1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.699e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.176193836744295e-4
allele num: 8502
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

QD
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SIO_000300: 1.244e1

DP
type: SiteQuality
SIO_000300: 2.138671e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

FS
type: SiteQuality
SIO_000300: 4.708e0

VQSLOD
type: SiteQuality
SIO_000300: 7.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.32e-1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 2736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8762
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.265502404454569e-4
allele num: 7902
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MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.850000000000001e-1

FS
type: SiteQuality
SIO_000300: 8.74e-1

BaseQRankSum
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SIO_000300: 2.63e0

InbreedingCoeff
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SIO_000300: -7.96e-2

VQSLOD
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QD
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SIO_000300: 1.409e1

MQRankSum
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SIO_000300: -2.25e-1

ClippingRankSum
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SIO_000300: -1.321e0

DP
type: SiteQuality
SIO_000300: 6.90712e5

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 390
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
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allele frequency: 1.265822784810127e-4
allele num: 7900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 638
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.947e1

InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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SIO_000300: 2.7e-2

BaseQRankSum
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FS
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VQSLOD
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QD
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MQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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South Asian
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allele frequency: 0.0e0
allele num: 7902
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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num of homozygotes: 0

East Asian
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allele frequency: 1.5625e-3
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European (Non-Finnish)
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Latino
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Other
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num of homozygotes: 0

DP
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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FS
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QD
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InbreedingCoeff
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MQ
type: SiteQuality
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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Other
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South Asian
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allele frequency: 1.265822784810127e-3
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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DP
type: SiteQuality
SIO_000300: 7.18229e5

BaseQRankSum
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ClippingRankSum
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MQ
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QD
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InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.09e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6421
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5776
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1004
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1736
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10086
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.529285823520416e-5
allele num: 65390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.385e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 3.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.87e-1

DP
type: SiteQuality
SIO_000300: 1.799406e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.536e0

FS
type: SiteQuality
SIO_000300: 1.254e0

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.8e-2

GenotypeQuality
all individuals: 1345
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1724
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4059
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12624
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2188
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2997
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.540226405956777e-5
allele num: 66076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.89e-1

QD
type: SiteQuality
SIO_000300: 1.489e1

FS
type: SiteQuality
SIO_000300: 3.268e0

VQSLOD
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.95e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

DP
type: SiteQuality
SIO_000300: 2.112946e6

GenotypeQuality
all individuals: 1977
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4905
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3001
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512538947877908e-5
allele num: 66114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8440
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.110225e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.57e0

VQSLOD
type: SiteQuality
SIO_000300: 5.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

QD
type: SiteQuality
SIO_000300: 1.236e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

GenotypeQuality
all individuals: 3138
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1556
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2355
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12624
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4875
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1162
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65958
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.027749229188078e-4
allele num: 9730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -8.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: -8.877e-1

QD
type: SiteQuality
SIO_000300: 8.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.62e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

DP
type: SiteQuality
SIO_000300: 2.103789e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

GenotypeQuality
all individuals: 3152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12625
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 4060
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5896
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4886
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.061157074885596e-5
allele num: 65994
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.41e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.445e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.29e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-1

DP
type: SiteQuality
SIO_000300: 2.103307e6

GenotypeQuality
all individuals: 3001
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12631
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 4071
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 7.144558228149559e-4
allele num: 8398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-5
allele num: 66040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

DP
type: SiteQuality
SIO_000300: 2.103322e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.691e1

VQSLOD
type: SiteQuality
SIO_000300: 5.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 11435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12631
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1985
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3172
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4919
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-5
allele num: 66040
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.36e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

DP
type: SiteQuality
SIO_000300: 2.103322e6

VQSLOD
type: SiteQuality
SIO_000300: 5.26e0

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.06e-1

QD
type: SiteQuality
SIO_000300: 1.691e1

GenotypeQuality
all individuals: 194
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1973
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10307
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2998
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 776
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4891
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65922
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.562514941429596e-4
allele num: 8366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.578e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.101226e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.49e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.82e-1

GenotypeQuality
all individuals: 12625
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3152
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1747
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1977
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4065
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3228
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.517358582180141e-5
allele num: 65904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9716
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.100962e6

VQSLOD
type: SiteQuality
SIO_000300: -7.502e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

QD
type: SiteQuality
SIO_000300: 1.096e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 7.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4060
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12646
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 1737
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3124
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 16
allele frequency: 1.64778578784758e-3
allele num: 9710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.741250217656277e-4
allele num: 11486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.111617312072893e-5
allele num: 65850
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -6.5e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

DP
type: SiteQuality
SIO_000300: 2.101248e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.16e0

QD
type: SiteQuality
SIO_000300: 1.613e1

GenotypeQuality
all individuals: 12607
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 2098
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2631
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2030
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 25
allele frequency: 4.027191597667451e-4
allele num: 62078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

African
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European (Finnish)
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allele count: 11
allele frequency: 1.705955334987593e-3
allele num: 6448
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
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InbreedingCoeff
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FS
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ClippingRankSum
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DP
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SIO_000300: 1.849464e6

MQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8898
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11414
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.61087663906698e-5
allele num: 62078
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 15686
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6448
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

MQRankSum
type: SiteQuality
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MQ
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QD
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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DP
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FS
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SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15684
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6452
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.610824742268041e-5
allele num: 62080
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7906
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Other
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 8898
num of homozygotes: 0

ReadPosRankSum
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QD
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InbreedingCoeff
type: SiteQuality
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FS
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SIO_000300: 0.0e0

ClippingRankSum
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VQSLOD
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
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BaseQRankSum
type: SiteQuality
SIO_000300: 6.23e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15740
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.209448616727646e-5
allele num: 62316
num of homozygotes: 0

FS
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ReadPosRankSum
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DP
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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MQRankSum
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MQ
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SIO_000300: 6.0e1

VQSLOD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7952
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.023621541819116e-5
allele num: 62316
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9262
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.142973881887042e-5
allele num: 63634
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.32e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

FS
type: SiteQuality
SIO_000300: 9.66e-1

QD
type: SiteQuality
SIO_000300: 1.711e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.938281e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8336
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.206554121151936e-5
allele num: 16112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63976
num of homozygotes: 0

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -4.39e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64410
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16218
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.219e0

MQ
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.714e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501862309263487e-5
allele num: 66584
num of homozygotes: 0

InbreedingCoeff
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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MQ
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QD
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FS
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.19e-1

DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 27

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 1.696764028602594e-3
allele num: 16502
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 898
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66596
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9784
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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DP
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QD
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
type: Population
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 900
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South Asian
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East Asian
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allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2059
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GenotypeQuality
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variant carriers: 1

Other
type: Population
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allele frequency: 0.0e0
allele num: 896
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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allele frequency: 1.020616452337212e-4
allele num: 9798
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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East Asian
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66636
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: -1.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.388e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.263e1

VQSLOD
type: SiteQuality
SIO_000300: 2.47e-1

GenotypeQuality
all individuals: 12595
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.39e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.850000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.025e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.79e-1

QD
type: SiteQuality
SIO_000300: 1.225e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 9.667e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

DP
type: SiteQuality
SIO_000300: 1.983702e6

GenotypeQuality
all individuals: 4273
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3855
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510163399679845e-5
allele num: 66218
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.288161793121216e-4
allele num: 15526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.461e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

MQRankSum
type: SiteQuality
SIO_000300: -7.74e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

QD
type: SiteQuality
SIO_000300: 1.284e1

DP
type: SiteQuality
SIO_000300: 1.967339e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
all individuals: 32
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3851
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021450459652707e-4
allele num: 9790
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.965483e6

VQSLOD
type: SiteQuality
SIO_000300: -3.285e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.87e-1

QD
type: SiteQuality
SIO_000300: 8.470000000000001e0

GenotypeQuality
all individuals: 229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3850
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.76132521974307e-5
allele num: 14790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.951456e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

QD
type: SiteQuality
SIO_000300: 1.444e1

VQSLOD
type: SiteQuality
SIO_000300: 2.46e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.12e0

GenotypeQuality
all individuals: 2718
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22077
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3849
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
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variant carriers: 0

GenotypeQuality
all individuals: 12593
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519387383007172e-5
allele num: 65816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.074e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

QD
type: SiteQuality
SIO_000300: 1.222e1

DP
type: SiteQuality
SIO_000300: 1.945145e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
type: SiteQuality
SIO_000300: 2.28e0

GenotypeQuality
all individuals: 212
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2678
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.732801940738174e-4
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.634520246747695e-5
allele num: 65492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

QD
type: SiteQuality
SIO_000300: 1.606e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

DP
type: SiteQuality
SIO_000300: 1.928631e6

GenotypeQuality
all individuals: 2678
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2056
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6006
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526904049349539e-5
allele num: 65492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

DP
type: SiteQuality
SIO_000300: 1.928631e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

VQSLOD
type: SiteQuality
SIO_000300: 4.13e0

MQRankSum
type: SiteQuality
SIO_000300: 4.93e-1

QD
type: SiteQuality
SIO_000300: 1.606e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 5941
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.847953216374269e-4
allele num: 8550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65026
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.910592e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 4.793e0

QD
type: SiteQuality
SIO_000300: 1.419e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.081598667776853e-4
allele num: 9608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.75e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.266e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.326e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.546e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.47e-1

DP
type: SiteQuality
SIO_000300: 1.881453e6

GenotypeQuality
all individuals: 452
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5693
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4182
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2045
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.563623854645526e-5
allele num: 63954
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.06e-1

DP
type: SiteQuality
SIO_000300: 1.863209e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.955e0

QD
type: SiteQuality
SIO_000300: 2.55e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
all individuals: 1420
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 9.25e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
all individuals: 1060
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 12608
bin: 9.75e1
variant carriers: 48

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 46
allele frequency: 7.215912656083328e-4
allele num: 63748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.424e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

DP
type: SiteQuality
SIO_000300: 1.84667e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

VQSLOD
type: SiteQuality
SIO_000300: 5.97e0

GenotypeQuality
all individuals: 977
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5427
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.053518752633797e-4
allele num: 9492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.58e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.661e0

QD
type: SiteQuality
SIO_000300: 1.69e1

FS
type: SiteQuality
SIO_000300: 3.014e0

MQRankSum
type: SiteQuality
SIO_000300: -1.62e-1

DP
type: SiteQuality
SIO_000300: 1.847823e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.97e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.132e0

GenotypeQuality
all individuals: 33620
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 778
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.068604402650139e-4
allele num: 9358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.72959e6

FS
type: SiteQuality
SIO_000300: 5.383e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.43e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.273e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.456e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.897e1

GenotypeQuality
all individuals: 642
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4095
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56045190687223e-5
allele num: 64084
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: -1.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

FS
type: SiteQuality
SIO_000300: 7.554e0

QD
type: SiteQuality
SIO_000300: 1.67e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.33e0

DP
type: SiteQuality
SIO_000300: 1.737719e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
all individuals: 637
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2418
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 595
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.679749165444732e-5
allele num: 64106
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.745845723281441e-5
allele num: 11434
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.83e-1

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.22e-1

FS
type: SiteQuality
SIO_000300: 2.853e0

QD
type: SiteQuality
SIO_000300: 1.398e1

DP
type: SiteQuality
SIO_000300: 1.738688e6

GenotypeQuality
all individuals: 364
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4091
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.56035451254525e-5
allele num: 64088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.65e-1

QD
type: SiteQuality
SIO_000300: 1.306e1

DP
type: SiteQuality
SIO_000300: 1.739443e6

FS
type: SiteQuality
SIO_000300: 1.991e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.466e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.61e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 80
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2160
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4088
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 839
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.062699256110521e-4
allele num: 9410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.108486167236556e-5
allele num: 64340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

DP
type: SiteQuality
SIO_000300: 1.752709e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.8e-2

MQ
type: SiteQuality
SIO_000300: 5.929e1

MQRankSum
type: SiteQuality
SIO_000300: 5.639999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.382e1

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4085
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12156
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.172607879924953e-4
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.983e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.948e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.309e0

MQRankSum
type: SiteQuality
SIO_000300: -1.155e0

VQSLOD
type: SiteQuality
SIO_000300: 3.92e-1

FS
type: SiteQuality
SIO_000300: 3.425e0

DP
type: SiteQuality
SIO_000300: 1.754147e6

QD
type: SiteQuality
SIO_000300: 1.244e1