6-30887636-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887636
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887636
    reference: chr 6
allele count: 1
allele frequency: 9.09454690967296e-6
allele num: 109956
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1165+11G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1165+11G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1085+11G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.745+11G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.23+11G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3778+11G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1255+11G>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10475
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

6-30887643-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887643
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887643
    reference: chr 6
allele count: 1
allele frequency: 9.139932364500503e-6
allele num: 109410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.23+18G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3778+18G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1165+18G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1085+18G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.745+18G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1255+18G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1165+18G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10474
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3242
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48887
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff

6-30887656-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887656
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887656
    reference: chr 6
allele count: 1
allele frequency: 9.22969006700755e-6
allele num: 108346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1165+31T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.745+31T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3778+31T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1255+31T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.23+31T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1085+31T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1165+31T>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4755
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10474
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1791
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48885
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

6-30887657-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887657
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887656
    reference: chr 6
allele count: 2
allele frequency: 1.848565513161786e-5
allele num: 108192
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1085+37delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3778+37delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1165+37delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.745+37delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1255+37delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.23+37delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1165+37delG
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4222
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1859
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10472
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: TG
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff

6-30887665-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887665
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887665
    reference: chr 6
allele count: 1
allele frequency: 9.280914726955489e-6
allele num: 107748
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1255+40C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1085+40C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.23+40C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3778+40C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1165+40C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1165+40C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.745+40C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3531
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10471
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2932
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4757
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3049
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4999
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 614
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum

6-30887667-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887667
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887667
    reference: chr 6
allele count: 4
allele frequency: 3.728352254721026e-5
allele num: 107286
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1085+42G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.745+42G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1255+42G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1165+42G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.23+42G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3778+42G>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1165+42G>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3530
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4221
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10469
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3694
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4756
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5000
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 737
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 674
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/6-30887818-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887818
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887818
    reference: chr 6
allele count: 2
allele frequency: 2.218475463661372e-5
allele num: 90152
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1086-48C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1166-48C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1256-48C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3779-48C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.24-48C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.746-48C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1166-48C>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2698
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4521
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5135
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2055
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8158
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1006
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2673
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5825
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 759
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17219
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-30887821-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887821
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887821
    reference: chr 6
allele count: 1
allele frequency: 1.015434606011373e-5
allele num: 98480
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1166-45A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3779-45A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.24-45A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1086-45A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.746-45A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1166-45A>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1256-45A>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5592
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5462
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2922
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1640
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4654
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18964
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3552
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4268
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

6-30887834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887834
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887834
    reference: chr 6
allele count: 1
allele frequency: 9.472746907148135e-6
allele num: 105566
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.746-32G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3779-32G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1166-32G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1256-32G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1086-32G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1166-32G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.24-32G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7939
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3867
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

6-30887834-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887834
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887834
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 105566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3779-32G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.746-32G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1086-32G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1166-32G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1256-32G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.24-32G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1166-32G>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6284
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4996
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3867
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20550
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7939
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 571
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-30887844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887844
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887844
    reference: chr 6
allele count: 1
allele frequency: 9.468979622755851e-6
allele num: 105608
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1166-22C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3779-22C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1166-22C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.24-22C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1256-22C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1086-22C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.746-22C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1263
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5673
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7953
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4120
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ

6-30887860-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887860
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887860
    reference: chr 6
allele count: 17
allele frequency: 1.607838686490372e-4
allele num: 105732
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.746-6C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1256-6C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1166-6C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.24-6C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1086-6C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1166-6C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3779-6C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6429
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5797
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4112
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3811
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2852
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1831
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3865
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4388
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1256-6C>T
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS

http://identifiers.org/exac.variant/6-30887861-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887861
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887861
    reference: chr 6
allele count: 80
allele frequency: 7.565441065214102e-4
allele num: 105744
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.24-5C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.746-5C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1166-5C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1086-5C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1256-5C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1166-5C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3779-5C>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6426
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6751
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5798
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5053
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6283
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4380
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5672
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1256-5C>A
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

6-30887864-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887864
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887864
    reference: chr 6
allele count: 1
allele frequency: 9.453582907922103e-6
allele num: 105780
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3779-2A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.746-2A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1166-2A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1086-2A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.24-2A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1166-2A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1256-2A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3978
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5797
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2020
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3218
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2850
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3657
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7962
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1256-2A>G
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

6-30887867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887867
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887867
    reference: chr 6
allele count: 1
allele frequency: 9.449473664316898e-6
allele num: 105826
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1167G>A
  hgvsp: ENST00000321897.5:c.1167G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.25G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1087G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.747G>A
  hgvsp: ENST00000542001.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1257G>A
  hgvsp: ENST00000541562.1:c.1257G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3780G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1167G>A
  hgvsp: ENST00000416670.2:c.1167G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3879
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6272
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5054
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5797
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20564
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7970
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2851
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3863
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1257G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

6-30887868-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887868
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887868
    reference: chr 6
allele count: 33
allele frequency: 3.117737089734142e-4
allele num: 105846
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1168G>A
  hgvsp: ENSP00000316092.5:p.Ala390Thr
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3781G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1168G>A
  hgvsp: ENSP00000394802.2:p.Ala390Thr
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1258G>A
  hgvsp: ENSP00000441000.1:p.Ala420Thr
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.748G>A
  hgvsp: ENSP00000438200.1:p.Ala250Thr
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.26G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1088G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1024
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6430
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5793
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6291
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3538
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3218
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala420Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-30887871-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887871
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887871
    reference: chr 6
allele count: 1
allele frequency: 9.442513974920682e-6
allele num: 105904
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1171G>A
  hgvsp: ENSP00000316092.5:p.Val391Met
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1091G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.29G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1171G>A
  hgvsp: ENSP00000394802.2:p.Val391Met
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1261G>A
  hgvsp: ENSP00000441000.1:p.Val421Met
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.751G>A
  hgvsp: ENSP00000438200.1:p.Val251Met
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3784G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5798
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2883
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6274
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2344
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val421Met
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff

6-30887895-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887895
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887895
    reference: chr 6
allele count: 1
allele frequency: 9.374707040404987e-6
allele num: 106670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.53C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1195C>T
  hgvsp: ENSP00000394802.2:p.Pro399Ser
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1195C>T
  hgvsp: ENSP00000316092.5:p.Pro399Ser
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1115C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1285C>T
  hgvsp: ENSP00000441000.1:p.Pro429Ser
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.775C>T
  hgvsp: ENSP00000438200.1:p.Pro259Ser
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3808C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3866
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro429Ser
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

6-30887897-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887897
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887897
    reference: chr 6
allele count: 1
allele frequency: 9.362945208044642e-6
allele num: 106804
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1117T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1197T>C
  hgvsp: ENST00000416670.2:c.1197T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1197T>C
  hgvsp: ENST00000321897.5:c.1197T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1287T>C
  hgvsp: ENST00000541562.1:c.1287T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.55T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.777T>C
  hgvsp: ENST00000542001.1:c.777T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3810T>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6445
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5800
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6784
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3903
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Pro429Pro
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

6-30887900-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887900
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887900
    reference: chr 6
allele count: 1
allele frequency: 9.349114638843702e-6
allele num: 106962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1120C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1290C>T
  hgvsp: ENST00000541562.1:c.1290C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1200C>T
  hgvsp: ENST00000416670.2:c.1200C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3813C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1200C>T
  hgvsp: ENST00000321897.5:c.1200C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.58C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.780C>T
  hgvsp: ENST00000542001.1:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6440
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5671
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20600
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ala430Ala
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-30887911-T-TG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887911
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887912
    reference: chr 6
allele count: 1
allele frequency: 9.296099356709924e-6
allele num: 107572
alternate allele: TG
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1216dupG
  hgvsp: ENSP00000316092.5:p.Ala406GlyfsTer43
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.796dupG
  hgvsp: ENSP00000438200.1:p.Ala266GlyfsTer43
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1136dupG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1306dupG
  hgvsp: ENSP00000441000.1:p.Ala436GlyfsTer43
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1216dupG
  hgvsp: ENSP00000394802.2:p.Ala406GlyfsTer43
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.74dupG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3829dupG
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4398
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20600
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala436GlyfsTer43
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

6-30887916-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887916
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887916
    reference: chr 6
allele count: 1
allele frequency: 9.281087000909547e-6
allele num: 107746
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1306G>A
  hgvsp: ENSP00000441000.1:p.Ala436Thr
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1216G>A
  hgvsp: ENSP00000394802.2:p.Ala406Thr
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3829G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1136G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.796G>A
  hgvsp: ENSP00000438200.1:p.Ala266Thr
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1216G>A
  hgvsp: ENSP00000316092.5:p.Ala406Thr
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.74G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6782
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6297
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5799
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4403
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1583
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4030
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala436Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

6-30887933-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887933
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887933
    reference: chr 6
allele count: 20
allele frequency: 1.840773124712379e-4
allele num: 108650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.813C>T
  hgvsp: ENST00000542001.1:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1153C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1233C>T
  hgvsp: ENST00000416670.2:c.1233C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3846C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.91C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1233C>T
  hgvsp: ENST00000321897.5:c.1233C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1323C>T
  hgvsp: ENST00000541562.1:c.1323C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6759
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6367
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6272
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5794
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4109
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3224
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20598
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 1518
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3904
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser441Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

6-30887935-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887935
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887935
    reference: chr 6
allele count: 1
allele frequency: 9.189656123067874e-6
allele num: 108818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3848C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1235C>T
  hgvsp: ENSP00000394802.2:p.Pro412Leu
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1235C>T
  hgvsp: ENSP00000316092.5:p.Pro412Leu
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1325C>T
  hgvsp: ENSP00000441000.1:p.Pro442Leu
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.93C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.815C>T
  hgvsp: ENSP00000438200.1:p.Pro272Leu
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1155C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6370
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6270
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2846
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro442Leu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

6-30887939-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887939
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887939
    reference: chr 6
allele count: 1
allele frequency: 9.185941834616303e-6
allele num: 108862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1159G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.819G>A
  hgvsp: ENST00000542001.1:c.819G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1239G>A
  hgvsp: ENST00000416670.2:c.1239G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.97G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1329G>A
  hgvsp: ENST00000541562.1:c.1329G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1239G>A
  hgvsp: ENST00000321897.5:c.1239G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3852G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6358
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6269
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20596
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3221
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4110
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Leu443Leu
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

6-30887951-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887951
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887951
    reference: chr 6
allele count: 3
allele frequency: 2.747504350215221e-5
allele num: 109190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1171G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.831G>A
  hgvsp: ENST00000542001.1:c.831G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.109G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1341G>A
  hgvsp: ENST00000541562.1:c.1341G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3864G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1251G>A
  hgvsp: ENST00000321897.5:c.1251G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1251G>A
  hgvsp: ENST00000416670.2:c.1251G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6336
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6044
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6754
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2837
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3950
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala447Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

6-30887963-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887963
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887963
    reference: chr 6
allele count: 2
allele frequency: 1.825850389819058e-5
allele num: 109538
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.843C>T
  hgvsp: ENST00000542001.1:c.843C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.121C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1353C>T
  hgvsp: ENST00000541562.1:c.1353C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1263C>T
  hgvsp: ENST00000416670.2:c.1263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1183C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1263C>T
  hgvsp: ENST00000321897.5:c.1263C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3876C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6745
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4475
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7957
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4094
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5586
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4344
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20599
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Thr451Thr
num of homozygotes: 1
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

6-30887972-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887972
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887972
    reference: chr 6
allele count: 31860
allele frequency: 2.85458292267718e-1
allele num: 111610
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1362C>T
  hgvsp: ENST00000541562.1:c.1362C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.852C>T
  hgvsp: ENST00000542001.1:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1272C>T
  hgvsp: ENST00000321897.5:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3885C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1192C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.130C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1272C>T
  hgvsp: ENST00000416670.2:c.1272C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.75e1
  variant carriers: 749
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 2.5e0
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 7.75e1
  variant carriers: 818
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 8.75e1
  variant carriers: 381
genotype depth: GenotypeDepth
  all individuals: 3563
  bin: 6.25e1
  variant carriers: 2274
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 7.5e0
  variant carriers: 980
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 6.75e1
  variant carriers: 1621
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 1.25e1
  variant carriers: 1299
genotype depth: GenotypeDepth
  all individuals: 5608
  bin: 3.25e1
  variant carriers: 1314
genotype depth: GenotypeDepth
  all individuals: 5803
  bin: 5.25e1
  variant carriers: 3124
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 9.75e1
  variant carriers: 782
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 8.25e1
  variant carriers: 567
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 4.75e1
  variant carriers: 3019
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 7.25e1
  variant carriers: 1154
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 2.75e1
  variant carriers: 776
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 3.75e1
  variant carriers: 1975
genotype depth: GenotypeDepth
  all individuals: 6575
  bin: 4.25e1
  variant carriers: 2697
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 2.25e1
  variant carriers: 540
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.25e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 5.75e1
  variant carriers: 2722
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 3.75e1
  variant carriers: 165
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 2.75e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.75e1
  variant carriers: 175
genotype quality: GenotypeQuality
  all individuals: 34996
  bin: 9.75e1
  variant carriers: 24690
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 2365
  bin: 8.25e1
  variant carriers: 182
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.25e1
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.5e0
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 1.25e1
  variant carriers: 69
hgvs: p.Ser454Ser
num of homozygotes: 5830
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

6-30887978-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887978
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887978
    reference: chr 6
allele count: 2
allele frequency: 1.8202999854376e-5
allele num: 109872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1278C>T
  hgvsp: ENST00000321897.5:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3891C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1278C>T
  hgvsp: ENST00000416670.2:c.1278C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1368C>T
  hgvsp: ENST00000541562.1:c.1368C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1198C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.858C>T
  hgvsp: ENST00000542001.1:c.858C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.136C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9041
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7643
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2676
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1714
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5234
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2838
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3294
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 574
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9600
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5732
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys456Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

6-30887979-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887979
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887979
    reference: chr 6
allele count: 2
allele frequency: 1.818380186929483e-5
allele num: 109988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1199G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.859G>A
  hgvsp: ENSP00000438200.1:p.Gly287Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1369G>A
  hgvsp: ENSP00000441000.1:p.Gly457Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1279G>A
  hgvsp: ENSP00000394802.2:p.Gly427Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.137G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3892G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1279G>A
  hgvsp: ENSP00000316092.5:p.Gly427Arg
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6657
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18943
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5738
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3287
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3998
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly457Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD

6-30887982-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887982
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887982
    reference: chr 6
allele count: 1
allele frequency: 9.100174723354689e-6
allele num: 109888
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1372G>A
  hgvsp: ENSP00000441000.1:p.Asp458Asn
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.862G>A
  hgvsp: ENSP00000438200.1:p.Asp288Asn
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3895G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.140G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1282G>A
  hgvsp: ENSP00000394802.2:p.Asp428Asn
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1202G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1282G>A
  hgvsp: ENSP00000316092.5:p.Asp428Asn
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8984
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5229
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4126
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3494
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2837
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3493
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3290
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2371
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9552
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4002
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp458Asn
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

6-30887988-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887988
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887988
    reference: chr 6
allele count: 35783
allele frequency: 3.246801560656928e-1
allele num: 110210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3901C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1288C>T
  hgvsp: ENST00000321897.5:c.1288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1378C>T
  hgvsp: ENST00000541562.1:c.1378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.146C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.868C>T
  hgvsp: ENST00000542001.1:c.868C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1208C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1288C>T
  hgvsp: ENST00000416670.2:c.1288C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.25e1
  variant carriers: 763
genotype depth: GenotypeDepth
  all individuals: 8412
  bin: 2.75e1
  variant carriers: 1655
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 3.75e1
  variant carriers: 3570
genotype depth: GenotypeDepth
  all individuals: 5302
  bin: 4.75e1
  variant carriers: 3886
genotype depth: GenotypeDepth
  all individuals: 3341
  bin: 7.5e0
  variant carriers: 1280
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.75e1
  variant carriers: 483
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 8.25e1
  variant carriers: 335
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 2.5e0
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.75e1
  variant carriers: 556
genotype depth: GenotypeDepth
  all individuals: 2944
  bin: 5.75e1
  variant carriers: 2489
genotype depth: GenotypeDepth
  all individuals: 1979
  bin: 6.25e1
  variant carriers: 1704
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 6.75e1
  variant carriers: 1078
genotype depth: GenotypeDepth
  all individuals: 2109
  bin: 1.25e1
  variant carriers: 1088
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 527
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 5.25e1
  variant carriers: 3358
genotype depth: GenotypeDepth
  all individuals: 8658
  bin: 3.25e1
  variant carriers: 2757
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 9.25e1
  variant carriers: 178
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 7.25e1
  variant carriers: 702
genotype depth: GenotypeDepth
  all individuals: 6701
  bin: 4.25e1
  variant carriers: 4238
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 8.75e1
  variant carriers: 224
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 3.25e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 33144
  bin: 9.75e1
  variant carriers: 27811
genotype quality: GenotypeQuality
  all individuals: 1879
  bin: 2.25e1
  variant carriers: 236
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.75e1
  variant carriers: 110
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 1.75e1
  variant carriers: 205
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 7.5e0
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 2632
  bin: 7.75e1
  variant carriers: 271
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 7.25e1
  variant carriers: 167
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 9.25e1
  variant carriers: 368
hgvs: p.Leu460Leu
num of homozygotes: 6250
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

6-30887998-TAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30887998
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30887996
    reference: chr 6
allele count: 1
allele frequency: 9.19709371838499e-6
allele num: 108730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.873+6_873+7delAC
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.151+6_151+7delAC
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1293+6_1293+7delAC
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1213+6_1213+7delAC
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1383+6_1383+7delAC
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1293+6_1293+7delAC
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3906+6_3906+7delAC
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2338
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5062
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12519
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15809
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2065
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7576
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1383+6_1383+7delAC
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: TAC
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-30888007-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888007
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888007
    reference: chr 6
allele count: 1
allele frequency: 9.217439395335976e-6
allele num: 108490
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.151+14A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1213+14A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1293+14A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1293+14A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3906+14A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.873+14A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1383+14A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15290
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2388
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2335
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15521
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3609
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4045
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

6-30888015-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888015
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888015
    reference: chr 6
allele count: 1
allele frequency: 9.221009147241074e-6
allele num: 108448
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1383+22C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1293+22C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.873+22C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1293+22C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1213+22C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.151+22C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3906+22C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14775
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5595
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7455
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4708
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9805
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7100
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

6-30888023-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888023
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888022
    reference: chr 6
allele count: 1
allele frequency: 9.217269476090403e-6
allele num: 108492
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3906+35delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1213+35delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1293+35delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1383+35delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.873+35delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.151+35delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1293+35delG
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2308
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6000
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4083
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11313
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13875
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3933
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14131
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9802
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6890
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2708
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: TG
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

6-30888038-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888038
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888038
    reference: chr 6
allele count: 61
allele frequency: 5.606514586128931e-4
allele num: 108802
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1293+45C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1213+45C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3906+45C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.873+45C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1383+45C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1293+45C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.151+45C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11748
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7268
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1712
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2438
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4065
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8180
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10440
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11594
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4219
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1692
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

6-30888040-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888040
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888040
    reference: chr 6
allele count: 1
allele frequency: 9.18088173188153e-6
allele num: 108922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1293+47C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1383+47C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1293+47C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3906+47C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.873+47C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1213+47C>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.151+47C>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4000
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11443
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1733
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6148
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9794
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2118
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3341
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

6-30888041-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888041
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888040
    reference: chr 6
allele count: 1
allele frequency: 9.179870380230232e-6
allele num: 108934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.873+49delT
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3906+49delT
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1383+49delT
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1213+49delT
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1293+49delT
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.151+49delT
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1293+49delT
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10349
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4387
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10529
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1725
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1983
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1093
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6143
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: CT
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

6-30888044-ATCC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888044
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888041
    reference: chr 6
allele count: 1
allele frequency: 9.163215188945497e-6
allele num: 109132
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1214-58_1214-56delCCT
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.152-58_152-56delCCT
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1294-58_1294-56delCCT
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1384-58_1384-56delCCT
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1294-58_1294-56delCCT
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3907-58_3907-56delCCT
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.874-58_874-56delCCT
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8800
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11589
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2063
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2070
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1677
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3981
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6215
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4409
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4664
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: ATCC
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

6-30888093-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888093
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888093
    reference: chr 6
allele count: 1
allele frequency: 8.682816705739342e-6
allele num: 115170
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1294-17T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.874-17T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1294-17T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1384-17T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3907-17T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.152-17T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1214-17T>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2790
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10374
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6959
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3351
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: MQ

http://identifiers.org/exac.variant/6-30888095-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888095
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888095
    reference: chr 6
allele count: 1
allele frequency: 8.671522719389524e-6
allele num: 115320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3907-15C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.874-15C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.152-15C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1214-15C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1294-15C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1384-15C>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1294-15C>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10458
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5960
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2742
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15090
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13956
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4389
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3235
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum

6-30888097-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888097
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888097
    reference: chr 6
allele count: 2
allele frequency: 1.728967115045472e-5
allele num: 115676
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1214-13G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1384-13G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1294-13G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1294-13G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.152-13G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.874-13G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3907-13G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3381
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5975
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10598
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9623
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6990
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4412
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

6-30888104-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888104
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888104
    reference: chr 6
allele count: 1
allele frequency: 8.586491731208463e-6
allele num: 116462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1294-6C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.874-6C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1384-6C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1294-6C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.152-6C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3907-6C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1214-6C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10811
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2683
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9657
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4546
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21789
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3382
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1384-6C>T
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD

6-30888111-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888111
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888111
    reference: chr 6
allele count: 2
allele frequency: 1.705262439889499e-5
allele num: 117284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1215G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1295G>A
  hgvsp: ENSP00000394802.2:p.Gly432Asp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.153G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1385G>A
  hgvsp: ENSP00000441000.1:p.Gly462Asp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1295G>A
  hgvsp: ENSP00000316092.5:p.Gly432Asp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.875G>A
  hgvsp: ENSP00000438200.1:p.Gly292Asp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3908G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6053
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10963
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4624
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 617
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9676
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly462Asp
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

6-30888119-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888119
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888119
    reference: chr 6
allele count: 2
allele frequency: 1.692648826148039e-5
allele num: 118158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3916C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1223C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.161C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.883C>T
  hgvsp: ENSP00000438200.1:p.Arg295Trp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1393C>T
  hgvsp: ENSP00000441000.1:p.Arg465Trp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1303C>T
  hgvsp: ENSP00000394802.2:p.Arg435Trp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1303C>T
  hgvsp: ENSP00000316092.5:p.Arg435Trp
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1010
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11174
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7362
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3929
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg465Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-30888120-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888120
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888120
    reference: chr 6
allele count: 1
allele frequency: 8.442950980226608e-6
allele num: 118442
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1304G>A
  hgvsp: ENSP00000394802.2:p.Arg435Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3917G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1304G>A
  hgvsp: ENSP00000316092.5:p.Arg435Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1224G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1394G>A
  hgvsp: ENSP00000441000.1:p.Arg465Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.884G>A
  hgvsp: ENSP00000438200.1:p.Arg295Gln
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.162G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15614
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6106
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11215
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7441
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4695
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1972
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg465Gln
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum

6-30888151-GCTGAGTGAATGGGGC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888151
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888136
    reference: chr 6
allele count: 1
allele frequency: 8.315870006320061e-6
allele num: 120252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsp: ENSP00000438200.1:p.Ser307_Leu311del
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsp: ENSP00000394802.2:p.Ser447_Leu451del
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsp: ENSP00000441000.1:p.Ser477_Leu481del
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsp: ENSP00000316092.5:p.Ser447_Leu451del
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4923
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9819
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Ser477_Leu481del
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: GCTGAGTGAATGGGGC
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD

6-30888154-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888154
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888154
    reference: chr 6
allele count: 29
allele frequency: 2.41116118196784e-4
allele num: 120274
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1428G>A
  hgvsp: ENST00000541562.1:c.1428G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.918G>A
  hgvsp: ENST00000542001.1:c.918G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1338G>A
  hgvsp: ENST00000416670.2:c.1338G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3951G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.196G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1258G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1338G>A
  hgvsp: ENST00000321897.5:c.1338G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6211
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16203
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11581
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16644
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7687
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9853
  bin: 9.75e1
  variant carriers: 29
hgvs: p.Leu476Leu
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

6-30888156-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888156
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888156
    reference: chr 6
allele count: 1
allele frequency: 8.312137383006666e-6
allele num: 120306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1260G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.198G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1430G>A
  hgvsp: ENSP00000441000.1:p.Ser477Asn
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.920G>A
  hgvsp: ENSP00000438200.1:p.Ser307Asn
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3953G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1340G>A
  hgvsp: ENSP00000316092.5:p.Ser447Asn
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1340G>A
  hgvsp: ENSP00000394802.2:p.Ser447Asn
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16666
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6210
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23467
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2684
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser477Asn
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-30888160-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888160
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888160
    reference: chr 6
allele count: 1
allele frequency: 8.310893919750009e-6
allele num: 120324
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1264A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.202A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1434A>G
  hgvsp: ENST00000541562.1:c.1434A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.924A>G
  hgvsp: ENST00000542001.1:c.924A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3957A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1344A>G
  hgvsp: ENST00000416670.2:c.1344A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1344A>G
  hgvsp: ENST00000321897.5:c.1344A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16752
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11632
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7702
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4981
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9854
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3718
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu478Glu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

6-30888161-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888161
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888161
    reference: chr 6
allele count: 72629
allele frequency: 6.010543215598001e-1
allele num: 120836
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1435T>C
  hgvsp: ENSP00000441000.1:p.Trp479Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1345T>C
  hgvsp: ENSP00000316092.5:p.Trp449Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1265T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.203T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1345T>C
  hgvsp: ENSP00000394802.2:p.Trp449Arg
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3958T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.925T>C
  hgvsp: ENSP00000438200.1:p.Trp309Arg
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 641
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 4.25e1
  variant carriers: 5916
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 5.25e1
  variant carriers: 5438
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 6.75e1
  variant carriers: 2709
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 3.75e1
  variant carriers: 5029
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 3.25e1
  variant carriers: 3909
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 7.25e1
  variant carriers: 1897
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 2.75e1
  variant carriers: 2678
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.75e1
  variant carriers: 765
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 7.75e1
  variant carriers: 1407
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 2.25e1
  variant carriers: 1625
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.25e1
  variant carriers: 484
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 4.75e1
  variant carriers: 5977
genotype depth: GenotypeDepth
  all individuals: 4727
  bin: 5.75e1
  variant carriers: 4699
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 9.75e1
  variant carriers: 1762
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.25e1
  variant carriers: 931
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 6.25e1
  variant carriers: 3770
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 153
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 70
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.25e1
  variant carriers: 228
genotype quality: GenotypeQuality
  all individuals: 46361
  bin: 9.75e1
  variant carriers: 46088
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.75e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 141
hgvs: p.Trp479Arg
num of homozygotes: 22808
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: DP

6-30888161-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888161
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888160
    reference: chr 6
allele count: 2
allele frequency: 1.655135886656295e-5
allele num: 120836
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3962delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1349delG
  hgvsp: ENSP00000316092.5:p.Gly450AlafsTer22
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1269delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.207delG
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1349delG
  hgvsp: ENSP00000394802.2:p.Gly450AlafsTer22
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1439delG
  hgvsp: ENSP00000441000.1:p.Gly480AlafsTer22
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.929delG
  hgvsp: ENSP00000438200.1:p.Gly310AlafsTer22
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6049
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5113
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5248
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8340
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly480AlafsTer22
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
reference allele: TG
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

6-30888162-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888162
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888162
    reference: chr 6
allele count: 23
allele frequency: 1.902713434811383e-4
allele num: 120880
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1346G>A
  hgvsp: ENSP00000394802.2:p.Trp449Ter
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1436G>A
  hgvsp: ENSP00000441000.1:p.Trp479Ter
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1266G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.926G>A
  hgvsp: ENSP00000438200.1:p.Trp309Ter
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1346G>A
  hgvsp: ENSP00000316092.5:p.Trp449Ter
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3959G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.204G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7985
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16585
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2845
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3351
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7906
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2049
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Trp479Ter
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-30888169-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888169
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888169
    reference: chr 6
allele count: 38530
allele frequency: 3.196502347807331e-1
allele num: 120538
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.211G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.933G>A
  hgvsp: ENST00000542001.1:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1443G>A
  hgvsp: ENST00000541562.1:c.1443G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1273G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1353G>A
  hgvsp: ENST00000321897.5:c.1353G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3966G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1353G>A
  hgvsp: ENST00000416670.2:c.1353G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.25e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 369
genotype depth: GenotypeDepth
  all individuals: 3490
  bin: 5.25e1
  variant carriers: 3376
genotype depth: GenotypeDepth
  all individuals: 2307
  bin: 6.25e1
  variant carriers: 2258
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 6.75e1
  variant carriers: 1606
genotype depth: GenotypeDepth
  all individuals: 4247
  bin: 3.75e1
  variant carriers: 3443
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 7.75e1
  variant carriers: 753
genotype depth: GenotypeDepth
  all individuals: 3976
  bin: 4.75e1
  variant carriers: 3839
genotype depth: GenotypeDepth
  all individuals: 4233
  bin: 4.25e1
  variant carriers: 3966
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 9.75e1
  variant carriers: 1021
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 8.25e1
  variant carriers: 542
genotype depth: GenotypeDepth
  all individuals: 7691
  bin: 3.25e1
  variant carriers: 2671
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7831
  bin: 2.25e1
  variant carriers: 1151
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 5.75e1
  variant carriers: 2862
genotype depth: GenotypeDepth
  all individuals: 16269
  bin: 2.75e1
  variant carriers: 1901
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 1.75e1
  variant carriers: 582
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 9.25e1
  variant carriers: 258
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.25e1
  variant carriers: 1163
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 4120
  bin: 6.75e1
  variant carriers: 140
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 8.75e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 2.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 4.75e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 7.25e1
  variant carriers: 82
hgvs: p.Leu481Leu
num of homozygotes: 6646
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

6-30888173-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888173
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888173
    reference: chr 6
allele count: 1
allele frequency: 8.341675008341675e-6
allele num: 119880
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1277C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1357C>T
  hgvsp: ENSP00000316092.5:p.Arg453Trp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.215C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3970C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1357C>T
  hgvsp: ENSP00000394802.2:p.Arg453Trp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1447C>T
  hgvsp: ENSP00000441000.1:p.Arg483Trp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.937C>T
  hgvsp: ENSP00000438200.1:p.Arg313Trp
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12902
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8669
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg483Trp
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP

6-30888177-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888177
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888177
    reference: chr 6
allele count: 1
allele frequency: 8.352544184958738e-6
allele num: 119724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1361G>A
  hgvsp: ENSP00000394802.2:p.Gly454Asp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1451G>A
  hgvsp: ENSP00000441000.1:p.Gly484Asp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.941G>A
  hgvsp: ENSP00000438200.1:p.Gly314Asp
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1281G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3974G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.219G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1361G>A
  hgvsp: ENSP00000316092.5:p.Gly454Asp
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 774
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly484Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-30888180-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888180
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888180
    reference: chr 6
allele count: 1
allele frequency: 8.366660531115611e-6
allele num: 119522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1364T>A
  hgvsp: ENSP00000394802.2:p.Leu455His
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3977T>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1284T>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1454T>A
  hgvsp: ENSP00000441000.1:p.Leu485His
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.222T>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.944T>A
  hgvsp: ENSP00000438200.1:p.Leu315His
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1364T>A
  hgvsp: ENSP00000316092.5:p.Leu455His
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12928
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1185
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1519
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1602
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8545
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu485His
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

6-30888192-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888192
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888192
    reference: chr 6
allele count: 1
allele frequency: 8.45337120443633e-6
allele num: 118296
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.3989C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.234C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.956C>T
  hgvsp: ENSP00000438200.1:p.Pro319Leu
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1466C>T
  hgvsp: ENSP00000441000.1:p.Pro489Leu
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1376C>T
  hgvsp: ENSP00000394802.2:p.Pro459Leu
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1376C>T
  hgvsp: ENSP00000316092.5:p.Pro459Leu
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1296C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30177
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1635
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 481
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro489Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff

6-30888211-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888211
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888211
    reference: chr 6
allele count: 1
allele frequency: 8.882888004548038e-6
allele num: 112576
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4008C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1395C>T
  hgvsp: ENST00000321897.5:c.1395C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1315C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1395C>T
  hgvsp: ENST00000416670.2:c.1395C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.253C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1485C>T
  hgvsp: ENST00000541562.1:c.1485C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.975C>T
  hgvsp: ENST00000542001.1:c.975C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7974
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8574
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1040
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1485C>T
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

6-30888212-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888212
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888212
    reference: chr 6
allele count: 36
allele frequency: 3.195341901583469e-4
allele num: 112664
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1396A>G
  hgvsp: ENSP00000394802.2:p.Ser466Gly
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1486A>G
  hgvsp: ENSP00000441000.1:p.Ser496Gly
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1396A>G
  hgvsp: ENSP00000316092.5:p.Ser466Gly
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.254A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.976A>G
  hgvsp: ENSP00000438200.1:p.Ser326Gly
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1316A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4009A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7999
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10326
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24946
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8480
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9036
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1933
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34139
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ser496Gly
num of homozygotes: 1
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

6-30888214-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888214
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888214
    reference: chr 6
allele count: 2
allele frequency: 1.783135108147144e-5
allele num: 112162
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4010+1G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.977+1G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1317+1G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1397+1G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1487+1G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.255+1G>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1397+1G>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10169
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1896
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33728
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6411
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1487+1G>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

6-30888238-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888238
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888239
    reference: chr 6
allele count: 1
allele frequency: 9.712698381864449e-6
allele num: 102958
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.977+27dupA
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4010+27dupA
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1397+27dupA
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1397+27dupA
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1317+27dupA
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1487+27dupA
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.255+27dupA
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7305
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18346
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1206
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1250
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 550
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

6-30888252-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888252
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888252
    reference: chr 6
allele count: 1
allele frequency: 1.016983626563612e-5
allele num: 98330
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1487+39A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.255+39A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1397+39A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4010+39A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1317+39A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1397+39A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.977+39A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14033
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9574
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18060
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2197
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6009
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 399
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

6-30888253-AAGGGAATGT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888253
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888244
    reference: chr 6
allele count: 8
allele frequency: 8.174776726410659e-5
allele num: 97862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 5241
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21790
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9842
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14577
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4242
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1430
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2107
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1293
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1527
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6580
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6215
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: AAGGGAATGT
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-30888260-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888260
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888260
    reference: chr 6
allele count: 6
allele frequency: 6.358357000551057e-5
allele num: 94364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.977+47T>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4010+47T>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.255+47T>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1317+47T>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1397+47T>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1487+47T>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1397+47T>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20659
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14316
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6101
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2564
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3100
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

6-30888260-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888260
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888260
    reference: chr 6
allele count: 1
allele frequency: 1.05972616675851e-5
allele num: 94364
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.977+47T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1317+47T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1397+47T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1397+47T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4010+47T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1487+47T>C
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.255+47T>C
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6557
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4138
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9271
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP

6-30888409-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888409
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888409
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 24630
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1488-36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1318-36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1398-36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1398-36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4011-36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.256-36C>T
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.978-36C>T
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 31113
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15859
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23653
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5530
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2900
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

6-30888410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888410
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888410
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 24776
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1488-35G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.256-35G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1398-35G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.978-35G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1318-35G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4011-35G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1398-35G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31536
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4989
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1915
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25319
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2941
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

6-30888413-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888413
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888413
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 25622
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1398-32A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1318-32A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1398-32A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.256-32A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4011-32A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1488-32A>G
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.978-32A>G
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32440
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14252
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2868
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27234
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12825
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3019
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-30888427-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888427
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888426
    reference: chr 6
allele count: 1
allele frequency: 3.472463365511494e-5
allele num: 28798
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.978-15delC
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1318-15delC
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1398-15delC
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1398-15delC
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1488-15delC
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4011-15delC
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.256-15delC
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9245
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2080
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8858
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2732
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: AC
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP

6-30888432-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30888432
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30888432
    reference: chr 6
allele count: 1
allele frequency: 3.195500734965169e-5
allele num: 31294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000394802
  ensembl transcript: ENST00000416670
  gene symbol: VARS2
  hgvsc: ENST00000416670.2:c.1398-13G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000477288
  gene symbol: VARS2
  hgvsc: ENST00000477288.1:n.4011-13G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000441000
  ensembl transcript: ENST00000541562
  gene symbol: VARS2
  hgvsc: ENST00000541562.1:c.1488-13G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000438200
  ensembl transcript: ENST00000542001
  gene symbol: VARS2
  hgvsc: ENST00000542001.1:c.978-13G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000476162
  gene symbol: VARS2
  hgvsc: ENST00000476162.1:n.256-13G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl transcript: ENST00000469358
  gene symbol: VARS2
  hgvsc: ENST00000469358.1:n.1318-13G>A
  variant of: http://identifiers.org/hgnc/21642
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137411
  ensembl protein: ENSP00000316092
  ensembl transcript: ENST00000321897
  gene symbol: VARS2
  hgvsc: ENST00000321897.5:c.1398-13G>A
  variant of: http://identifiers.org/hgnc/21642
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8553
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4216
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7718
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36060
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 182
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48887
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 289
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.618594412612088e-5
allele num: 61782
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.164e0

FS
type: SiteQuality
SIO_000300: 1.113e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.417e1

DP
type: SiteQuality
SIO_000300: 4.097774e6

GenotypeQuality
all individuals: 486
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 906
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.77963125548727e-5
allele num: 11390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61646
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.27e-1

DP
type: SiteQuality
SIO_000300: 4.093382e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 1.147e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.514e0

VQSLOD
type: SiteQuality
SIO_000300: 5.4e-2

FS
type: SiteQuality
SIO_000300: 2.501e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

GenotypeQuality
all individuals: 457
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.108893324462187e-4
allele num: 9018
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8482
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61370
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.52e-1

VQSLOD
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.09e0

FS
type: SiteQuality
SIO_000300: 1.658e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

DP
type: SiteQuality
SIO_000300: 4.085502e6

QD
type: SiteQuality
SIO_000300: 1.68e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.63025758069775e-5
allele num: 61340
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 10588
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.787346221441125e-5
allele num: 11380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9004
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 4.084388e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

FS
type: SiteQuality
SIO_000300: 2.381e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.05e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8472
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61206
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9002
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 9.720062208398134e-5
allele num: 10288
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -7.831e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.588e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.545145138593448e-5
allele num: 61114
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11376
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 8978
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 3.76e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.95e-1

DP
type: SiteQuality
SIO_000300: 4.078514e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -6.124e0

QD
type: SiteQuality
SIO_000300: 1.426e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 2
allele frequency: 2.409058058299205e-4
allele num: 8302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53860
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5794
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5358
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.662e0

MQRankSum
type: SiteQuality
SIO_000300: -1.078e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.39e-1

QD
type: SiteQuality
SIO_000300: 1.021e1

VQSLOD
type: SiteQuality
SIO_000300: -2.521e-1

DP
type: SiteQuality
SIO_000300: 2.893488e6

FS
type: SiteQuality
SIO_000300: 1.418e0

MQ
type: SiteQuality
SIO_000300: 5.644e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.47e-2

GenotypeQuality
all individuals: 3637
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 827
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8688
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10462
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.289324394017535e-4
allele num: 7756
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 698
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5974
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.733089e6

QD
type: SiteQuality
SIO_000300: 1.011e1

MQ
type: SiteQuality
SIO_000300: 5.464e1

MQRankSum
type: SiteQuality
SIO_000300: 7.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.62e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

FS
type: SiteQuality
SIO_000300: 2.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.141e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.795074758135444e-5
allele num: 11370
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.869e1

DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 9.340000000000001e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.078e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8822
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele num: 11370
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9000
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60614
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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QD
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9012
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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num of homozygotes: 0

South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.649402916144356e-5
allele num: 60628
num of homozygotes: 0

Other
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num of homozygotes: 0

QD
type: SiteQuality
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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FS
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DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 17
allele frequency: 2.802598173365426e-4
allele num: 60658
num of homozygotes: 0

Latino
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num of homozygotes: 0

East Asian
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele frequency: 0.0e0
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QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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MQ
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MQRankSum
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ClippingRankSum
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FS
type: SiteQuality
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GenotypeQuality
all individuals: 4108
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1866
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3770
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3862
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 78
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3214
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7963
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20588
bin: 9.75e1
variant carriers: 80

Latino
type: Population
allele count: 17
allele frequency: 1.494636891155266e-3
allele num: 11374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

African
type: Population
allele count: 62
allele frequency: 6.867523260965884e-3
allele num: 9028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.648641519388024e-5
allele num: 60656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8918
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.32e-1

FS
type: SiteQuality
SIO_000300: 5.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

DP
type: SiteQuality
SIO_000300: 2.535052e6

MQRankSum
type: SiteQuality
SIO_000300: 2.43e-1

MQ
type: SiteQuality
SIO_000300: 5.744e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.7e-3

QD
type: SiteQuality
SIO_000300: 1.158e1

GenotypeQuality
all individuals: 258
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4376
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20564
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4109
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5678
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3862
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9028
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60672
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.119068934646374e-4
allele num: 8936
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.26e0

FS
type: SiteQuality
SIO_000300: 8.57e-1

DP
type: SiteQuality
SIO_000300: 2.533528e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.503e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

QD
type: SiteQuality
SIO_000300: 1.335e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.075e0

MQ
type: SiteQuality
SIO_000300: 5.469e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-1

GenotypeQuality
all individuals: 33
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5675
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2101
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4376
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3218
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60694
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.107174490699734e-4
allele num: 9032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8948
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 1.529e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.647e0

DP
type: SiteQuality
SIO_000300: 2.53408e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 5.926e1

MQRankSum
type: SiteQuality
SIO_000300: -6.48e-1

QD
type: SiteQuality
SIO_000300: 1.079e1

GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3861
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20571
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 2851
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7972
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5673
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8410
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8960
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 754
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.318000593100267e-4
allele num: 60698
num of homozygotes: 0

Latino
type: Population
allele count: 25
allele frequency: 2.196450535933931e-3
allele num: 11382
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.281e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

FS
type: SiteQuality
SIO_000300: 1.092e0

MQ
type: SiteQuality
SIO_000300: 5.834e1

VQSLOD
type: SiteQuality
SIO_000300: -7.338e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.542e0

MQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

DP
type: SiteQuality
SIO_000300: 2.534959e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.2e-1

GenotypeQuality
all individuals: 84
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20557
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4375
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3456
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3865
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3219
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7979
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8998
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60704
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8414
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.106439477760567e-4
allele num: 9038
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.8e-2

QD
type: SiteQuality
SIO_000300: 1.258e1

FS
type: SiteQuality
SIO_000300: 1.652e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.054e0

VQSLOD
type: SiteQuality
SIO_000300: -1.45e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.59e-1

DP
type: SiteQuality
SIO_000300: 2.534534e6

MQ
type: SiteQuality
SIO_000300: 5.728e1

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2859
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20602
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5663
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3237
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7866
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3903
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.054185114906177e-4
allele num: 9486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.548e0

QD
type: SiteQuality
SIO_000300: 1.191e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.545003e6

MQ
type: SiteQuality
SIO_000300: 5.833e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.165e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.25e-1

GenotypeQuality
all individuals: 7891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2155
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20601
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5667
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2859
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4407
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6411737674785e-5
allele num: 60932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.675e0

MQ
type: SiteQuality
SIO_000300: 5.774e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.185e0

DP
type: SiteQuality
SIO_000300: 2.546092e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.58e0

VQSLOD
type: SiteQuality
SIO_000300: -1.173e1

FS
type: SiteQuality
SIO_000300: 1.653e0

QD
type: SiteQuality
SIO_000300: 1.044e1

GenotypeQuality
all individuals: 2856
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7942
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4402
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3901
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3747
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3237
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9098
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.183431952662722e-4
allele num: 8450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9676
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.83e0

QD
type: SiteQuality
SIO_000300: 1.27e1

MQ
type: SiteQuality
SIO_000300: 5.722e1

VQSLOD
type: SiteQuality
SIO_000300: -1.546e0

DP
type: SiteQuality
SIO_000300: 2.547935e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
all individuals: 4134
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5662
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1652
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3238
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.635483448907497e-5
allele num: 61144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

FS
type: SiteQuality
SIO_000300: 2.941e0

DP
type: SiteQuality
SIO_000300: 2.55333e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.25e-1

QD
type: SiteQuality
SIO_000300: 1.093e1

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8130
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5648
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3238
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20598
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 224
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10182
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9134
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.634681400595024e-5
allele num: 61174
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.68e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.55443e6

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

MQ
type: SiteQuality
SIO_000300: 5.649e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.58e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.395e0

QD
type: SiteQuality
SIO_000300: 1.048e1

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8257
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5588
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.769000228035313e-4
allele num: 61394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.539951573849879e-4
allele num: 6608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.706e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.618e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.68e-1

QD
type: SiteQuality
SIO_000300: 1.27e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.87e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.299e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-2

DP
type: SiteQuality
SIO_000300: 2.556153e6

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3223
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variant carriers: 0

GenotypeQuality
all individuals: 4117
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9202
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.758101243650377e-5
allele num: 11418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10878
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.218e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.49e0

MQ
type: SiteQuality
SIO_000300: 5.823e1

QD
type: SiteQuality
SIO_000300: 2.943e1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

DP
type: SiteQuality
SIO_000300: 2.555876e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.19e-1

FS
type: SiteQuality
SIO_000300: 4.885e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-1

GenotypeQuality
all individuals: 3940
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8217
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3884
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5585
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.627604166666667e-5
allele num: 61440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10922
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.74e0

DP
type: SiteQuality
SIO_000300: 2.55545e6

QD
type: SiteQuality
SIO_000300: 1.586e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

FS
type: SiteQuality
SIO_000300: 9.75e-1

MQ
type: SiteQuality
SIO_000300: 5.818e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.235e0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4344
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5566
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20599
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4102
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3218
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.804077214504781e-4
allele num: 11086
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.625117821042025e-5
allele num: 61534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.556126e6

VQSLOD
type: SiteQuality
SIO_000300: -1.149e0

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

MQ
type: SiteQuality
SIO_000300: 5.779e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.54e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.022e0

QD
type: SiteQuality
SIO_000300: 1.296e1

GenotypeQuality
all individuals: 3223
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3786
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3896
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.24433053239464e-5
allele num: 61646
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.406e0

FS
type: SiteQuality
SIO_000300: 4.13e0

QD
type: SiteQuality
SIO_000300: 2.818e1

MQ
type: SiteQuality
SIO_000300: 5.801e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.479e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.095e0

DP
type: SiteQuality
SIO_000300: 2.556504e6

GenotypeQuality
all individuals: 1891
bin: 2.25e1
variant carriers: 176

GenotypeQuality
all individuals: 1061
bin: 7.5e0
variant carriers: 73

GenotypeQuality
all individuals: 2295
bin: 7.25e1
variant carriers: 111

GenotypeQuality
all individuals: 1606
bin: 8.75e1
variant carriers: 152

GenotypeQuality
all individuals: 370
bin: 1.75e1
variant carriers: 174

GenotypeQuality
all individuals: 5097
bin: 6.25e1
variant carriers: 133

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 94

GenotypeQuality
all individuals: 2014
bin: 9.25e1
variant carriers: 212

GenotypeQuality
all individuals: 2584
bin: 7.75e1
variant carriers: 145

GenotypeQuality
all individuals: 3274
bin: 6.75e1
variant carriers: 133

GenotypeQuality
all individuals: 355
bin: 3.25e1
variant carriers: 165

East Asian
type: Population
allele count: 4748
allele frequency: 5.558417232498244e-1
allele num: 8542
num of homozygotes: 1325

South Asian
type: Population
allele count: 6328
allele frequency: 4.967032967032967e-1
allele num: 12740
num of homozygotes: 1586

African
type: Population
allele count: 2256
allele frequency: 2.413866894928312e-1
allele num: 9346
num of homozygotes: 262

Other
type: Population
allele count: 216
allele frequency: 2.621359223300971e-1
allele num: 824
num of homozygotes: 23

European (Non-Finnish)
type: Population
allele count: 11147
allele frequency: 1.794950243148369e-1
allele num: 62102
num of homozygotes: 999

European (Finnish)
type: Population
allele count: 1639
allele frequency: 2.483333333333333e-1
allele num: 6600
num of homozygotes: 222

Latino
type: Population
allele count: 5526
allele frequency: 4.823673184357542e-1
allele num: 11456
num of homozygotes: 1413

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

QD
type: SiteQuality
SIO_000300: 1.784e1

MQ
type: SiteQuality
SIO_000300: 5.808e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.142e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

VQSLOD
type: SiteQuality
SIO_000300: 3.11e0

DP
type: SiteQuality
SIO_000300: 2.629598e6

GenotypeQuality
all individuals: 3273
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3512
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
all individuals: 4000
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variant carriers: 0

GenotypeQuality
all individuals: 213
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GenotypeQuality
all individuals: 1745
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GenotypeQuality
all individuals: 2370
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GenotypeQuality
all individuals: 238
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variant carriers: 0

GenotypeQuality
all individuals: 4466
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variant carriers: 0

GenotypeQuality
all individuals: 18939
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.746114894360049e-4
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.71e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

FS
type: SiteQuality
SIO_000300: 1.425e0

QD
type: SiteQuality
SIO_000300: 1.29e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.87e-1

DP
type: SiteQuality
SIO_000300: 2.23152e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.331e0

GenotypeQuality
all individuals: 156
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9663
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 2.5e0
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GenotypeQuality
all individuals: 3385
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GenotypeQuality
all individuals: 513
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GenotypeQuality
all individuals: 504
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GenotypeQuality
all individuals: 1836
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GenotypeQuality
all individuals: 3509
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GenotypeQuality
all individuals: 4461
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variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170686022008897e-4
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.804366966015144e-5
allele num: 11358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.858e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e-1

MQ
type: SiteQuality
SIO_000300: 5.829e1

FS
type: SiteQuality
SIO_000300: 7.59e-1

DP
type: SiteQuality
SIO_000300: 2.231312e6

QD
type: SiteQuality
SIO_000300: 2.832e1

GenotypeQuality
all individuals: 514
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3247
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4442
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 497
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variant carriers: 0

GenotypeQuality
all individuals: 199
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variant carriers: 0

GenotypeQuality
all individuals: 1816
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 319
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5703
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18940
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.074113856068743e-4
allele num: 9310
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61898
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.228774e6

VQSLOD
type: SiteQuality
SIO_000300: 1.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.087e0

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.187e1

FS
type: SiteQuality
SIO_000300: 8.798e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.472e0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
all individuals: 769
bin: 2.5e0
variant carriers: 13

GenotypeQuality
all individuals: 1274
bin: 8.75e1
variant carriers: 266

GenotypeQuality
all individuals: 296
bin: 5.25e1
variant carriers: 134

GenotypeQuality
all individuals: 6877
bin: 6.25e1
variant carriers: 182

GenotypeQuality
all individuals: 411
bin: 2.75e1
variant carriers: 141

GenotypeQuality
all individuals: 377
bin: 1.25e1
variant carriers: 110

GenotypeQuality
all individuals: 2333
bin: 8.25e1
variant carriers: 327

GenotypeQuality
all individuals: 256
bin: 4.75e1
variant carriers: 126

GenotypeQuality
all individuals: 3527
bin: 6.75e1
variant carriers: 163

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 63

GenotypeQuality
all individuals: 233
bin: 5.75e1
variant carriers: 156

European (Finnish)
type: Population
allele count: 2667
allele frequency: 4.056890781867964e-1
allele num: 6574
num of homozygotes: 554

South Asian
type: Population
allele count: 3198
allele frequency: 2.819111424541608e-1
allele num: 11344
num of homozygotes: 479

Latino
type: Population
allele count: 2441
allele frequency: 2.133368292256599e-1
allele num: 11442
num of homozygotes: 281

African
type: Population
allele count: 1146
allele frequency: 1.228032576082297e-1
allele num: 9332
num of homozygotes: 77

East Asian
type: Population
allele count: 2435
allele frequency: 2.86403199247236e-1
allele num: 8502
num of homozygotes: 343

European (Non-Finnish)
type: Population
allele count: 23604
allele frequency: 3.794611279017426e-1
allele num: 62204
num of homozygotes: 4455

Other
type: Population
allele count: 292
allele frequency: 3.596059113300493e-1
allele num: 812
num of homozygotes: 61

BaseQRankSum
type: SiteQuality
SIO_000300: -2.414e0

DP
type: SiteQuality
SIO_000300: 2.269259e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.57e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.93e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.51e-1

MQ
type: SiteQuality
SIO_000300: 5.842e1

FS
type: SiteQuality
SIO_000300: 5.580000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.704e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

GenotypeQuality
all individuals: 4889
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3691
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2743
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15839
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9845
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 268
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4105
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.618751618751619e-5
allele num: 61776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

QD
type: SiteQuality
SIO_000300: 1.581e1

MQ
type: SiteQuality
SIO_000300: 5.733e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.816627e6

BaseQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.21e-1

GenotypeQuality
all individuals: 4815
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7265
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9823
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 808
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2726
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3380
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.618961274446315e-5
allele num: 61768
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.803769e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.99e0

VQSLOD
type: SiteQuality
SIO_000300: -2.119e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

FS
type: SiteQuality
SIO_000300: 3.05e0

MQRankSum
type: SiteQuality
SIO_000300: -1.616e0

MQ
type: SiteQuality
SIO_000300: 5.871e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.27e-1

QD
type: SiteQuality
SIO_000300: 1.279e1

GenotypeQuality
all individuals: 510
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2715
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2051
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3985
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3675
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3520
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.922603691208574e-5
allele num: 10078
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61786
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.793462e6

VQSLOD
type: SiteQuality
SIO_000300: -1.2e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.171e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

QD
type: SiteQuality
SIO_000300: 2.538e1

GenotypeQuality
all individuals: 3955
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2161
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3464
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.616814874696847e-5
allele num: 61850
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11424
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10048
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

QD
type: SiteQuality
SIO_000300: 1.482e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

FS
type: SiteQuality
SIO_000300: 2.722e0

DP
type: SiteQuality
SIO_000300: 1.776569e6

MQ
type: SiteQuality
SIO_000300: 5.998e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.35e-1

GenotypeQuality
all individuals: 177
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2709
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1976
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2043
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1426
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3907
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9832
bin: 9.75e1
variant carriers: 61

Latino
type: Population
allele count: 17
allele frequency: 1.489138051857043e-3
allele num: 11416
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

African
type: Population
allele count: 38
allele frequency: 4.064171122994653e-3
allele num: 9350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.670244657189827e-5
allele num: 62046
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.343e1

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.64e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.169e0

VQSLOD
type: SiteQuality
SIO_000300: 3.59e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.754501e6

GenotypeQuality
all individuals: 2057
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4558
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2724
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 793
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10051
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2194
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.609994848016486e-5
allele num: 62112
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.162e0

QD
type: SiteQuality
SIO_000300: 1.068e1

DP
type: SiteQuality
SIO_000300: 1.752762e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.75e-1

FS
type: SiteQuality
SIO_000300: 2.88e0

VQSLOD
type: SiteQuality
SIO_000300: 1.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

MQ
type: SiteQuality
SIO_000300: 5.643e1

MQRankSum
type: SiteQuality
SIO_000300: 4.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.07e-1

GenotypeQuality
all individuals: 9792
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3934
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4208
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4576
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2727
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.807767752059631e-5
allele num: 10196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62126
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8480
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

DP
type: SiteQuality
SIO_000300: 1.753718e6

VQSLOD
type: SiteQuality
SIO_000300: -6.167e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

FS
type: SiteQuality
SIO_000300: 1.0471e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

QD
type: SiteQuality
SIO_000300: 2.942e1

GenotypeQuality
all individuals: 10745
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1525
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3355
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9804
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1066
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2744
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.068376068376068e-4
allele num: 9360
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

QD
type: SiteQuality
SIO_000300: 1.179e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

DP
type: SiteQuality
SIO_000300: 1.756469e6

MQ
type: SiteQuality
SIO_000300: 5.662e1

FS
type: SiteQuality
SIO_000300: 3.751e0

VQSLOD
type: SiteQuality
SIO_000300: 1.27e0

MQRankSum
type: SiteQuality
SIO_000300: -2.029e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.48e-1

GenotypeQuality
all individuals: 20415
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3258
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2488
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4369
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3666
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9609
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64808
num of homozygotes: 0

South Asian
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allele frequency: 7.689941556444171e-5
allele num: 13004
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ReadPosRankSum
type: SiteQuality
SIO_000300: -5.46e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
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QD
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ClippingRankSum
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SIO_000300: -1.818e0

BaseQRankSum
type: SiteQuality
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DP
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.811e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 7.65579543714592e-5
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 850
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 64860
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DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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MQ
type: SiteQuality
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FS
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InbreedingCoeff
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QD
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MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.538508877196221e-5
allele num: 64998
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele count: 1
allele frequency: 7.55629439322956e-5
allele num: 13234
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11494
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
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MQ
type: SiteQuality
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DP
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MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.88e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

QD
type: SiteQuality
SIO_000300: 1.263e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10010
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.531487380543984e-5
allele num: 65296
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.800404e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.404e0

QD
type: SiteQuality
SIO_000300: 1.003e1

MQ
type: SiteQuality
SIO_000300: 5.811e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.11e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10058
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South Asian
type: Population
allele count: 1
allele frequency: 7.112375533428166e-5
allele num: 14060
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524669146795145e-5
allele num: 65588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.911e1

DP
type: SiteQuality
SIO_000300: 1.814391e6

VQSLOD
type: SiteQuality
SIO_000300: 5.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.71e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.991e0

QD
type: SiteQuality
SIO_000300: 1.164e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518003521768171e-5
allele num: 65876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
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South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10104
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
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East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
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Other
type: Population
allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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MQRankSum
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
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Latino
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allele frequency: 0.0e0
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East Asian
type: Population
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Other
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.515932450050026e-5
allele num: 65966
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African
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ReadPosRankSum
type: SiteQuality
SIO_000300: 9.81e-1

ClippingRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Non-Finnish)
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allele num: 66404
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East Asian
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European (Finnish)
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Latino
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Other
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ClippingRankSum
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FS
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MQRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 3.463438139983135e-4
allele num: 66408
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East Asian
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South Asian
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Latino
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allele num: 11550
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VQSLOD
type: SiteQuality
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MQ
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ReadPosRankSum
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MQRankSum
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DP
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FS
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
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South Asian
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allele frequency: 6.279040562602035e-5
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European (Non-Finnish)
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allele frequency: 0.0e0
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African
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Latino
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East Asian
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Other
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VQSLOD
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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DP
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SIO_000300: 1.864609e6

QD
type: SiteQuality
SIO_000300: 6.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.19e-1

GenotypeQuality
all individuals: 2685
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 651
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4203
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23215
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66416
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.750390015600624e-5
allele num: 10256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.927e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.407e1

FS
type: SiteQuality
SIO_000300: 4.326e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.866669e6

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 27

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 24

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 78

GenotypeQuality
all individuals: 8340
bin: 6.25e1
variant carriers: 320

GenotypeQuality
all individuals: 160
bin: 2.25e1
variant carriers: 45

GenotypeQuality
all individuals: 690
bin: 7.75e1
variant carriers: 492

GenotypeQuality
all individuals: 515
bin: 7.25e1
variant carriers: 246

GenotypeQuality
all individuals: 1711
bin: 6.75e1
variant carriers: 393

GenotypeQuality
all individuals: 355
bin: 8.75e1
variant carriers: 319

GenotypeQuality
all individuals: 684
bin: 9.25e1
variant carriers: 638

GenotypeQuality
all individuals: 625
bin: 8.25e1
variant carriers: 536

Other
type: Population
allele count: 552
allele frequency: 6.092715231788079e-1
allele num: 906
num of homozygotes: 177

Latino
type: Population
allele count: 8014
allele frequency: 6.938528138528138e-1
allele num: 11550
num of homozygotes: 2845

African
type: Population
allele count: 3730
allele frequency: 3.617145073700543e-1
allele num: 10312
num of homozygotes: 672

South Asian
type: Population
allele count: 11962
allele frequency: 7.296571916554837e-1
allele num: 16394
num of homozygotes: 4431

East Asian
type: Population
allele count: 7261
allele frequency: 8.409775306926106e-1
allele num: 8634
num of homozygotes: 3071

European (Non-Finnish)
type: Population
allele count: 36805
allele frequency: 5.538250872757915e-1
allele num: 66456
num of homozygotes: 10180

European (Finnish)
type: Population
allele count: 4305
allele frequency: 6.53857837181045e-1
allele num: 6584
num of homozygotes: 1432

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.29e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

QD
type: SiteQuality
SIO_000300: 2.585e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

DP
type: SiteQuality
SIO_000300: 2.885336e6

GenotypeQuality
all individuals: 515
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46361
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1711
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.518833535844471e-4
allele num: 6584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.29e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.955e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

DP
type: SiteQuality
SIO_000300: 2.885336e6

MQRankSum
type: SiteQuality
SIO_000300: 7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.43e-1

QD
type: SiteQuality
SIO_000300: 2.585e1

GenotypeQuality
all individuals: 222
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21707
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23589
bin: 9.75e1
variant carriers: 23

GenotypeQuality
all individuals: 913
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502042778178322e-5
allele num: 66576
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.659508139937652e-5
allele num: 11548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 21
allele frequency: 1.288659793814433e-3
allele num: 16296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

QD
type: SiteQuality
SIO_000300: 1.519e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.381511e6

MQRankSum
type: SiteQuality
SIO_000300: -6.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.400000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.963e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.22e-1

GenotypeQuality
all individuals: 210
bin: 5.25e1
variant carriers: 78

GenotypeQuality
all individuals: 122
bin: 4.25e1
variant carriers: 39

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 42

GenotypeQuality
all individuals: 513
bin: 8.25e1
variant carriers: 165

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 24

GenotypeQuality
all individuals: 839
bin: 7.75e1
variant carriers: 118

GenotypeQuality
all individuals: 149
bin: 5.75e1
variant carriers: 60

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 15

GenotypeQuality
all individuals: 20592
bin: 6.25e1
variant carriers: 111

GenotypeQuality
all individuals: 309
bin: 9.25e1
variant carriers: 168

GenotypeQuality
all individuals: 31516
bin: 9.75e1
variant carriers: 30703

African
type: Population
allele count: 1262
allele frequency: 1.227148969272657e-1
allele num: 10284
num of homozygotes: 77

East Asian
type: Population
allele count: 2450
allele frequency: 2.844207104713257e-1
allele num: 8614
num of homozygotes: 342

Latino
type: Population
allele count: 2462
allele frequency: 2.136781808713765e-1
allele num: 11522
num of homozygotes: 281

Other
type: Population
allele count: 325
allele frequency: 3.60310421286031e-1
allele num: 902
num of homozygotes: 71

European (Finnish)
type: Population
allele count: 2668
allele frequency: 4.05224787363305e-1
allele num: 6584
num of homozygotes: 554

South Asian
type: Population
allele count: 4396
allele frequency: 2.705896836144281e-1
allele num: 16246
num of homozygotes: 667

European (Non-Finnish)
type: Population
allele count: 24967
allele frequency: 3.76088331877203e-1
allele num: 66386
num of homozygotes: 4654

BaseQRankSum
type: SiteQuality
SIO_000300: -2.079e0

QD
type: SiteQuality
SIO_000300: 2.222e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.48e-2

DP
type: SiteQuality
SIO_000300: 2.417222e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.955e1

VQSLOD
type: SiteQuality
SIO_000300: 4.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.66e-1

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1702
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42821
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160092807424594e-4
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66154
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.04e0

VQSLOD
type: SiteQuality
SIO_000300: -2.184e0

FS
type: SiteQuality
SIO_000300: 1.213e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

QD
type: SiteQuality
SIO_000300: 2.077e1

DP
type: SiteQuality
SIO_000300: 1.68138e6

GenotypeQuality
all individuals: 1788
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 42979
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512813530604218e-5
allele num: 66102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15808
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.646e0

MQRankSum
type: SiteQuality
SIO_000300: -4.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.72e-1

QD
type: SiteQuality
SIO_000300: 9.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.827e0

DP
type: SiteQuality
SIO_000300: 1.675172e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.46e-2

GenotypeQuality
all individuals: 747
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42959
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-5
allele num: 66040
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.18e-2

FS
type: SiteQuality
SIO_000300: 2.187e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.149e0

MQRankSum
type: SiteQuality
SIO_000300: -6.01e-1

MQ
type: SiteQuality
SIO_000300: 5.904e1

DP
type: SiteQuality
SIO_000300: 1.671206e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.03e-1

QD
type: SiteQuality
SIO_000300: 1.209e1

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1431
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2820
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8224
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52522725886157e-5
allele num: 65564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15166
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.4e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

VQSLOD
type: SiteQuality
SIO_000300: -1.363e0

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.64377e6

FS
type: SiteQuality
SIO_000300: 3.344e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.064e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

QD
type: SiteQuality
SIO_000300: 3.045e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

GenotypeQuality
all individuals: 8954
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33686
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6504
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.473841554559044e-5
allele num: 13380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63006
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.54e0

FS
type: SiteQuality
SIO_000300: 2.21e0

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.268e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.0e-2

DP
type: SiteQuality
SIO_000300: 1.484139e6

GenotypeQuality
all individuals: 601
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 34

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.012350678274954e-4
allele num: 9878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10888
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 35
allele frequency: 5.551325973861185e-4
allele num: 63048
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13428
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

MQRankSum
type: SiteQuality
SIO_000300: 1.86e-1

MQ
type: SiteQuality
SIO_000300: 5.948e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.4e-2

FS
type: SiteQuality
SIO_000300: 7.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

DP
type: SiteQuality
SIO_000300: 1.482344e6

QD
type: SiteQuality
SIO_000300: 1.306e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9844
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13326
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.185220576524925e-5
allele num: 62790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.75e-1

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

FS
type: SiteQuality
SIO_000300: 1.262e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.65e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.17e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

DP
type: SiteQuality
SIO_000300: 1.466777e6

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 129
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.713678582445076e-5
allele num: 58354
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 11200
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9278
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6008
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.823e1

DP
type: SiteQuality
SIO_000300: 1.083056e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.278e0

FS
type: SiteQuality
SIO_000300: 2.831e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.443e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7718
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GenotypeQuality
all individuals: 303
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7100
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.337e1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.324e0

FS
type: SiteQuality
SIO_000300: 3.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

DP
type: SiteQuality
SIO_000300: 9.87432e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 2271
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 336
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2163
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GenotypeQuality
all individuals: 308
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.434051554153372e-4
allele num: 55786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.22e-1

QD
type: SiteQuality
SIO_000300: 5.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.005e1

DP
type: SiteQuality
SIO_000300: 9.79763e5

FS
type: SiteQuality
SIO_000300: 4.294e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.89e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.54e-1

GenotypeQuality
all individuals: 126
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 3134
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 5.712979890310786e-4
allele num: 8752
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6742
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.85349940688019e-5
allele num: 53952
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

FS
type: SiteQuality
SIO_000300: 3.593e0

QD
type: SiteQuality
SIO_000300: 1.152e1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.62e-1

DP
type: SiteQuality
SIO_000300: 9.61948e5

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.85349940688019e-5
allele num: 53952
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

FS
type: SiteQuality
SIO_000300: 3.593e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.62e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

QD
type: SiteQuality
SIO_000300: 1.152e1

DP
type: SiteQuality
SIO_000300: 9.61948e5

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 92
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3236
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2378
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 934
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.54e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 4.70398e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.56e-1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.97e-2

ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.141e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 936
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1138
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 14156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2450
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.82e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.01e-2

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

MQ
type: SiteQuality
SIO_000300: 5.763e1

DP
type: SiteQuality
SIO_000300: 4.77191e5

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4244
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2105
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3821
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2782
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.096e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.29e0

MQRankSum
type: SiteQuality
SIO_000300: 7.05e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.63e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.971e0

DP
type: SiteQuality
SIO_000300: 4.85146e5

QD
type: SiteQuality
SIO_000300: 4.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 2476
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33308
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3590
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.093845216331505e-5
allele num: 16410
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.95e-2

MQ
type: SiteQuality
SIO_000300: 5.662e1

MQRankSum
type: SiteQuality
SIO_000300: -3.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 8.129e0

QD
type: SiteQuality
SIO_000300: 1.063e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.63e-1

DP
type: SiteQuality
SIO_000300: 5.37919e5