5-140811777-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811777
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811777
    reference: chr 5
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59401A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55703A>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62597A>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62597A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1451A>G
  hgvsp: ENSP00000252085.3:p.Asn484Ser
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62597A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9105A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62597A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62597A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46887A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16599A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+11936A>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62597A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8550A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+41929A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62597A>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+36973A>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21590A>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26834A>G
  variant of: http://identifiers.org/hgnc/8707
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn484Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: A
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

5-140811785-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811785
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811785
    reference: chr 5
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55711A>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1459A>T
  hgvsp: ENSP00000252085.3:p.Ile487Phe
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21598A>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62589A>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+36981A>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59409A>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62589A>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16607A>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46895A>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+41937A>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26842A>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62589A>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62589A>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62589A>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62589A>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62589A>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8558A>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9113A>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+11944A>T
  variant of: http://identifiers.org/hgnc/8714
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile487Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-140811788-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811788
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811788
    reference: chr 5
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62586A>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16610A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+36984A>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8561A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62586A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+11947A>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26845A>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1462A>G
  hgvsp: ENSP00000252085.3:p.Thr488Ala
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62586A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62586A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62586A>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62586A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46898A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+41940A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62586A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59412A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9116A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55714A>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21601A>G
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr488Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

5-140811799-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811799
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811799
    reference: chr 5
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62575G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59423G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46909G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8572G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16621G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62575G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1473G>A
  hgvsp: ENST00000252085.3:c.1473G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+41951G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9127G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26856G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62575G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62575G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62575G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62575G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+11958G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21612G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+36995G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62575G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55725G>A
  variant of: http://identifiers.org/hgnc/8704
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10719
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu491Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD

5-140811803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811803
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811803
    reference: chr 5
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59427G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62571G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62571G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8576G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26860G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21616G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16625G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62571G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62571G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62571G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1477G>A
  hgvsp: ENSP00000252085.3:p.Glu493Lys
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9131G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46913G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+41955G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62571G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55729G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+11962G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62571G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+36999G>A
  variant of: http://identifiers.org/hgnc/8706
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu493Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

5-140811814-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811814
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811814
    reference: chr 5
allele count: 9
allele frequency: 7.413020558777017e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+11973C>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1488C>G
  hgvsp: ENSP00000252085.3:p.Ile496Met
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62560C>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37010C>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8587C>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16636C>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55740C>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21627C>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62560C>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62560C>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26871C>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62560C>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62560C>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46924C>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9142C>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59438C>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+41966C>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62560C>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62560C>G
  variant of: http://identifiers.org/hgnc/8700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile496Met
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD

5-140811817-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811817
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811817
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9145A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8590A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62557A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55743A>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16639A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59441A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21630A>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62557A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1491A>G
  hgvsp: ENST00000252085.3:c.1491A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26874A>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46927A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62557A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37013A>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62557A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62557A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62557A>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+11976A>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+41969A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62557A>G
  variant of: http://identifiers.org/hgnc/8700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln497Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP

5-140811819-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811819
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811819
    reference: chr 5
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62555G>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1493G>C
  hgvsp: ENSP00000252085.3:p.Gly498Ala
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62555G>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9147G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16641G>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55745G>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62555G>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21632G>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46929G>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37015G>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62555G>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8592G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62555G>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62555G>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59443G>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+11978G>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26876G>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62555G>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+41971G>C
  variant of: http://identifiers.org/hgnc/8711
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly498Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum

5-140811832-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811832
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811832
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37028G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16654G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62542G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9160G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62542G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62542G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55758G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+41984G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46942G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1506G>A
  hgvsp: ENST00000252085.3:c.1506G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62542G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26889G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21645G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62542G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62542G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+11991G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59456G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62542G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8605G>A
  variant of: http://identifiers.org/hgnc/8698
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser502Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

5-140811832-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811832
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811832
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62542G>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62542G>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62542G>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55758G>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37028G>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1506G>T
  hgvsp: ENST00000252085.3:c.1506G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62542G>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8605G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62542G>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16654G>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+11991G>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26889G>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62542G>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62542G>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21645G>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59456G>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+41984G>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9160G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46942G>T
  variant of: http://identifiers.org/hgnc/8705
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser502Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP

5-140811834-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811834
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811834
    reference: chr 5
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62540C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21647C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46944C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62540C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37030C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62540C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+41986C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59458C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16656C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62540C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1508C>T
  hgvsp: ENSP00000252085.3:p.Ser503Phe
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62540C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62540C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26891C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8607C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62540C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9162C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55760C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+11993C>T
  variant of: http://identifiers.org/hgnc/8714
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser503Phe
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

5-140811839-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811839
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811839
    reference: chr 5
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9167G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+41991G>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26896G>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1513G>C
  hgvsp: ENSP00000252085.3:p.Val505Leu
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8612G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62535G>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62535G>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62535G>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55765G>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62535G>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37035G>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59463G>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46949G>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16661G>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62535G>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62535G>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+11998G>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62535G>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21652G>C
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val505Leu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

5-140811843-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811843
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811843
    reference: chr 5
allele count: 1
allele frequency: 8.236825198095647e-6
allele num: 121406
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59467C>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62531C>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9171C>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37039C>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46953C>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55769C>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8616C>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62531C>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62531C>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62531C>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1517C>G
  hgvsp: ENSP00000252085.3:p.Ser506Cys
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62531C>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26900C>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12002C>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62531C>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+41995C>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62531C>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21656C>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16665C>G
  variant of: http://identifiers.org/hgnc/8697
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10721
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser506Cys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

5-140811849-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811849
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811849
    reference: chr 5
allele count: 6
allele frequency: 4.942176534545814e-5
allele num: 121404
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62525A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62525A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8622A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46959A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62525A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62525A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62525A>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1523A>G
  hgvsp: ENSP00000252085.3:p.Asn508Ser
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9177A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62525A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37045A>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21662A>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16671A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42001A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12008A>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55775A>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26906A>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59473A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62525A>G
  variant of: http://identifiers.org/hgnc/8700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn508Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

5-140811854-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811854
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811854
    reference: chr 5
allele count: 70
allele frequency: 5.765872623636784e-4
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62520G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1528G>A
  hgvsp: ENSP00000252085.3:p.Asp510Asn
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62520G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62520G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37050G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8627G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62520G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46964G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59478G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21667G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62520G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16676G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42006G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62520G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55780G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26911G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9182G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62520G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12013G>A
  variant of: http://identifiers.org/hgnc/8714
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 9.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 8109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp510Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/5-140811856-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811856
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811856
    reference: chr 5
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9184C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26913C>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55782C>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62518C>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16678C>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62518C>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59480C>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1530C>A
  hgvsp: ENSP00000252085.3:p.Asp510Glu
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46966C>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62518C>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62518C>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62518C>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12015C>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62518C>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42008C>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8629C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62518C>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37052C>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21669C>A
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5238
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7451
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp510Glu
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

5-140811860-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811860
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811860
    reference: chr 5
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42012G>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26917G>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62514G>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8633G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62514G>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37056G>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62514G>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9188G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1534G>C
  hgvsp: ENSP00000252085.3:p.Gly512Arg
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21673G>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62514G>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12019G>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62514G>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62514G>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16682G>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55786G>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46970G>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62514G>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59484G>C
  variant of: http://identifiers.org/hgnc/8710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7452
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly512Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum

5-140811862-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811862
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811862
    reference: chr 5
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46972G>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62512G>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37058G>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9190G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62512G>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1536G>C
  hgvsp: ENST00000252085.3:c.1536G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62512G>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62512G>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21675G>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16684G>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26919G>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8635G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62512G>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62512G>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59486G>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55788G>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42014G>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62512G>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12021G>C
  variant of: http://identifiers.org/hgnc/8714
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly512Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP

5-140811873-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811873
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811873
    reference: chr 5
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62501C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62501C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12032C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55799C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62501C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26930C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8646C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42025C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62501C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37069C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1547C>T
  hgvsp: ENSP00000252085.3:p.Ala516Val
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62501C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16695C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21686C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62501C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59497C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9201C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46983C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62501C>T
  variant of: http://identifiers.org/hgnc/8700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala516Val
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

5-140811887-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811887
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811887
    reference: chr 5
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62487G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37083G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16709G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1561G>A
  hgvsp: ENSP00000252085.3:p.Asp521Asn
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55813G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9215G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26944G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62487G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8660G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62487G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59511G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+46997G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62487G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12046G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62487G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42039G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21700G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62487G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62487G>A
  variant of: http://identifiers.org/hgnc/8703
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp521Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

5-140811887-G-GACT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811887
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811890
    reference: chr 5
allele count: 3
allele frequency: 2.47133254250692e-5
allele num: 121392
alternate allele: GACT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62484_2422-62482dupTAC
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8663_2433+8665dupTAC
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26947_2424+26949dupTAC
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21703_2418+21705dupTAC
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37086_2424+37088dupTAC
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1564_1566dupTAC
  hgvsp: ENSP00000252085.3:p.Tyr522dup
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9218_1878+9220dupTAC
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62484_2422-62482dupTAC
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55816_2424+55818dupTAC
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62484_2422-62482dupTAC
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42042_2397+42044dupTAC
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47000_2424+47002dupTAC
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62484_2425-62482dupTAC
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62484_2425-62482dupTAC
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59514_2415+59516dupTAC
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62484_2422-62482dupTAC
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16712_2436+16714dupTAC
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62484_2410-62482dupTAC
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12049_2415+12051dupTAC
  variant of: http://identifiers.org/hgnc/8714
canonical: true
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr522dup
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-140811892-C-CGAGCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811892
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811897
    reference: chr 5
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: CGAGCA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1568_1572dupAGCAG
  hgvsp: ENSP00000252085.3:p.Phe525SerfsTer8
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9222_1878+9226dupAGCAG
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8667_2433+8671dupAGCAG
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  variant of: http://identifiers.org/hgnc/8701
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2202
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3556
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe525SerfsTer8
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

5-140811892-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811892
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811892
    reference: chr 5
allele count: 11
allele frequency: 9.061701952384875e-5
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37088C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12051C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47002C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16714C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62482C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1566C>T
  hgvsp: ENST00000252085.3:c.1566C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62482C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8665C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62482C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9220C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55818C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26949C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62482C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59516C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62482C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62482C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62482C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21705C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42044C>T
  variant of: http://identifiers.org/hgnc/8711
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5237
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr522Tyr
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-140811897-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811897
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811897
    reference: chr 5
allele count: 3
allele frequency: 2.47137325974133e-5
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62477A>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21710A>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59521A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62477A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26954A>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62477A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8670A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1571A>G
  hgvsp: ENSP00000252085.3:p.Gln524Arg
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37093A>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16719A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9225A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62477A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62477A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47007A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62477A>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12056A>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62477A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42049A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55823A>G
  variant of: http://identifiers.org/hgnc/8704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln524Arg
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

5-140811898-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811898
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811898
    reference: chr 5
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62476G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62476G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42050G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12057G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1572G>A
  hgvsp: ENST00000252085.3:c.1572G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37094G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62476G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55824G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21711G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16720G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47008G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62476G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9226G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8671G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62476G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62476G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59522G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26955G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62476G>A
  variant of: http://identifiers.org/hgnc/8702
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln524Gln
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD

5-140811902-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811902
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811902
    reference: chr 5
allele count: 3
allele frequency: 2.471536142096851e-5
allele num: 121382
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59526C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16724C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37098C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62472C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9230C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1576C>T
  hgvsp: ENSP00000252085.3:p.Arg526Ter
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47012C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62472C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55828C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62472C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62472C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62472C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42054C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62472C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21715C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8675C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12061C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62472C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26959C>T
  variant of: http://identifiers.org/hgnc/8707
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5240
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg526Ter
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

5-140811911-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811911
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811911
    reference: chr 5
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62463C>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21724C>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9239C>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59535C>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55837C>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26968C>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47021C>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42063C>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62463C>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12070C>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1585C>G
  hgvsp: ENSP00000252085.3:p.Gln529Glu
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62463C>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8684C>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62463C>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16733C>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62463C>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37107C>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62463C>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62463C>G
  variant of: http://identifiers.org/hgnc/8708
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln529Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

5-140811924-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811924
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811924
    reference: chr 5
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9252T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1598T>C
  hgvsp: ENSP00000252085.3:p.Met533Thr
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59548T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8697T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62450T>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62450T>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62450T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21737T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42076T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37120T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47034T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62450T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62450T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62450T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16746T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12083T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26981T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55850T>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62450T>C
  variant of: http://identifiers.org/hgnc/8700
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met533Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

5-140811925-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811925
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811925
    reference: chr 5
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62449G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62449G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12084G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8698G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59549G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62449G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37121G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21738G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62449G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16747G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62449G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62449G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9253G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62449G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1599G>A
  hgvsp: ENSP00000252085.3:p.Met533Ile
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47035G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55851G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42077G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26982G>A
  variant of: http://identifiers.org/hgnc/8707
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met533Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ

5-140811935-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811935
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811935
    reference: chr 5
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59559A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62439A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62439A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62439A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62439A>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26992A>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37131A>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47045A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62439A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1609A>G
  hgvsp: ENSP00000252085.3:p.Asn537Asp
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9263A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21748A>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62439A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42087A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12094A>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16757A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55861A>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8708A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62439A>G
  variant of: http://identifiers.org/hgnc/8709
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn537Asp
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

5-140811936-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811936
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811936
    reference: chr 5
allele count: 1
allele frequency: 8.239404126293587e-6
allele num: 121368
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12095A>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55862A>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62438A>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62438A>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37132A>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1610A>T
  hgvsp: ENSP00000252085.3:p.Asn537Ile
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8709A>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59560A>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26993A>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62438A>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16758A>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9264A>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47046A>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62438A>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62438A>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21749A>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42088A>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62438A>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62438A>T
  variant of: http://identifiers.org/hgnc/8702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5239
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7457
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7620
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn537Ile
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-140811938-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811938
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811938
    reference: chr 5
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1612G>C
  hgvsp: ENSP00000252085.3:p.Gly538Arg
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62436G>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16760G>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42090G>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47048G>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62436G>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62436G>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62436G>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62436G>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21751G>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37134G>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8711G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12097G>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+26995G>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62436G>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9266G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55864G>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59562G>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62436G>C
  variant of: http://identifiers.org/hgnc/8702
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1188
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly538Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/5-140811961-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811961
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811961
    reference: chr 5
allele count: 1
allele frequency: 8.239947264337508e-6
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9289C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8734C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37157C>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42113C>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62413C>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16783C>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1635C>A
  hgvsp: ENSP00000252085.3:p.Asn545Lys
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62413C>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62413C>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55887C>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62413C>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62413C>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47071C>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59585C>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21774C>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62413C>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62413C>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12120C>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27018C>A
  variant of: http://identifiers.org/hgnc/8707
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn545Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

5-140811961-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811961
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811961
    reference: chr 5
allele count: 3
allele frequency: 2.471984179301253e-5
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16783C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8734C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9289C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47071C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1635C>T
  hgvsp: ENST00000252085.3:c.1635C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62413C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42113C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21774C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55887C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62413C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62413C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37157C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59585C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62413C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62413C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62413C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62413C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12120C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27018C>T
  variant of: http://identifiers.org/hgnc/8707
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10739
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn545Asn
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

5-140811962-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811962
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811962
    reference: chr 5
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62412G>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62412G>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62412G>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47072G>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21775G>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1636G>T
  hgvsp: ENSP00000252085.3:p.Val546Leu
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59586G>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16784G>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62412G>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62412G>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62412G>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12121G>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62412G>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9290G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27019G>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55888G>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37158G>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8735G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42114G>T
  variant of: http://identifiers.org/hgnc/8711
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8137
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7621
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val546Leu
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

5-140811967-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811967
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811967
    reference: chr 5
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9295G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37163G>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62407G>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12126G>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16789G>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27024G>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59591G>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42119G>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1641G>T
  hgvsp: ENST00000252085.3:c.1641G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21780G>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47077G>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62407G>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62407G>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62407G>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62407G>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62407G>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62407G>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8740G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55893G>T
  variant of: http://identifiers.org/hgnc/8704
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser547Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD

5-140811979-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811979
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811979
    reference: chr 5
allele count: 2
allele frequency: 1.648206751054852e-5
allele num: 121344
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62395C>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59603C>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27036C>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62395C>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62395C>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55905C>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42131C>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47089C>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62395C>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62395C>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37175C>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8752C>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16801C>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62395C>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1653C>G
  hgvsp: ENSP00000252085.3:p.Phe551Leu
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62395C>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12138C>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21792C>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9307C>G
  variant of: http://identifiers.org/hgnc/8698
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe551Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: QD

5-140811979-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811979
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811979
    reference: chr 5
allele count: 2
allele frequency: 1.648206751054852e-5
allele num: 121344
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62395C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1653C>T
  hgvsp: ENST00000252085.3:c.1653C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59603C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9307C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8752C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21792C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47089C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37175C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62395C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16801C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42131C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62395C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62395C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62395C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27036C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55905C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62395C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12138C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62395C>T
  variant of: http://identifiers.org/hgnc/8709
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10742
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe551Phe
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

5-140811988-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811988
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811988
    reference: chr 5
allele count: 1
allele frequency: 8.241984669908513e-6
allele num: 121330
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62386C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21801C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62386C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47098C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8761C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55914C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9316C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59612C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62386C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62386C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62386C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62386C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1662C>T
  hgvsp: ENST00000252085.3:c.1662C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62386C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27045C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12147C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42140C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16810C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37184C>T
  variant of: http://identifiers.org/hgnc/8706
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8139
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp554Asp
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

5-140811994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140811994
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140811994
    reference: chr 5
allele count: 2
allele frequency: 1.64866870002473e-5
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47104C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9322C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12153C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1668C>T
  hgvsp: ENST00000252085.3:c.1668C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62380C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16816C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55920C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62380C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21807C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62380C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62380C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8767C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62380C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59618C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62380C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62380C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27051C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37190C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42146C>T
  variant of: http://identifiers.org/hgnc/8711
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn556Asn
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

5-140812000-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812000
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812000
    reference: chr 5
allele count: 3
allele frequency: 2.473370049137618e-5
allele num: 121292
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62374T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37196T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59624T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62374T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62374T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9328T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1674T>C
  hgvsp: ENST00000252085.3:c.1674T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42152T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16822T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62374T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21813T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62374T>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8773T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62374T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12159T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27057T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47110T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55926T>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62374T>C
  variant of: http://identifiers.org/hgnc/8703
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asn558Asn
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/5-140812002-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812002
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812002
    reference: chr 5
allele count: 3452
allele frequency: 2.846071399126061e-2
allele num: 121290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9330C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62372C>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16824C>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21815C>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8775C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12161C>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62372C>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62372C>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1676C>A
  hgvsp: ENSP00000252085.3:p.Ala559Glu
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62372C>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47112C>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62372C>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59626C>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62372C>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27059C>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42154C>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62372C>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37198C>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55928C>A
  variant of: http://identifiers.org/hgnc/8704
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 5.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 6.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
hgvs: p.Ala559Glu
num of homozygotes: 90
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

5-140812003-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812003
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812003
    reference: chr 5
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55929G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9331G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21816G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62371G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62371G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59627G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1677G>A
  hgvsp: ENST00000252085.3:c.1677G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8776G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42155G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62371G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12162G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16825G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62371G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37199G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47113G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27060G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62371G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62371G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62371G>A
  variant of: http://identifiers.org/hgnc/8703
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7567
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8336
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala559Ala
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

5-140812007-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812007
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812007
    reference: chr 5
allele count: 1
allele frequency: 8.247966876165026e-6
allele num: 121242
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8780G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1681G>A
  hgvsp: ENSP00000252085.3:p.Glu561Lys
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62367G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62367G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47117G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16829G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62367G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59631G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62367G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62367G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42159G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37203G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9335G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62367G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12166G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27064G>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62367G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55933G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21820G>A
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu561Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD

5-140812013-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812013
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812013
    reference: chr 5
allele count: 1
allele frequency: 8.251505899826718e-6
allele num: 121190
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1687C>T
  hgvsp: ENST00000252085.3:c.1687C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59637C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21826C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47123C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62361C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62361C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62361C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55939C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62361C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37209C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62361C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62361C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42165C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9341C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62361C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16835C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8786C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12172C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27070C>T
  variant of: http://identifiers.org/hgnc/8707
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10870
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu563Leu
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

5-140812014-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812014
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812014
    reference: chr 5
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62360T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62360T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62360T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9342T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42166T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8787T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27071T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47124T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62360T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62360T>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16836T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21827T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59638T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62360T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1688T>C
  hgvsp: ENSP00000252085.3:p.Leu563Pro
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37210T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55940T>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12173T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62360T>C
  variant of: http://identifiers.org/hgnc/8709
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu563Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

5-140812017-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812017
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812017
    reference: chr 5
allele count: 1
allele frequency: 8.253412786187088e-6
allele num: 121162
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12176A>G
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37213A>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47127A>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1691A>G
  hgvsp: ENSP00000252085.3:p.Tyr564Cys
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42169A>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55943A>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8790A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62357A>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62357A>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9345A>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16839A>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62357A>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62357A>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62357A>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27074A>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62357A>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59641A>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62357A>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21830A>G
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5861
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr564Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD

5-140812019-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812019
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812019
    reference: chr 5
allele count: 1
allele frequency: 8.256683785524381e-6
allele num: 121114
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62355C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62355C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42171C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12178C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62355C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27076C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9347C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1693C>T
  hgvsp: ENSP00000252085.3:p.Pro565Ser
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62355C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62355C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16841C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62355C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8792C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47129C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62355C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59643C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55945C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37215C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21832C>T
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5838
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8304
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro565Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD

5-140812021-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812021
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812021
    reference: chr 5
allele count: 9
allele frequency: 7.431015406971944e-5
allele num: 121114
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62353C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62353C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16843C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12180C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9349C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8794C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47131C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62353C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62353C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42173C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62353C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1695C>T
  hgvsp: ENST00000252085.3:c.1695C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21834C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59645C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55947C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27078C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62353C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37217C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62353C>T
  variant of: http://identifiers.org/hgnc/8700
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 8295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro565Pro
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

5-140812023-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812023
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812023
    reference: chr 5
allele count: 1
allele frequency: 8.258320257659592e-6
allele num: 121090
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62351C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9351C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16845C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62351C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62351C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37219C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62351C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62351C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62351C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8796C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59647C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21836C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12182C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47133C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1697C>T
  hgvsp: ENSP00000252085.3:p.Ala566Val
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27080C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62351C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55949C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42175C>T
  variant of: http://identifiers.org/hgnc/8711
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala566Val
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-140812030-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812030
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812030
    reference: chr 5
allele count: 2
allele frequency: 1.652291728627607e-5
allele num: 121044
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16852C>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47140C>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37226C>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62344C>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55956C>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62344C>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59654C>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27087C>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12189C>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8803C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42182C>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1704C>A
  hgvsp: ENST00000252085.3:c.1704C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62344C>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9358C>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62344C>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21843C>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62344C>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62344C>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62344C>A
  variant of: http://identifiers.org/hgnc/8696
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro568Pro
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

5-140812033-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812033
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812033
    reference: chr 5
allele count: 123
allele frequency: 1.016528925619835e-3
allele num: 121000
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55959G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62341G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16855G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59657G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42185G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62341G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62341G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21846G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1707G>A
  hgvsp: ENST00000252085.3:c.1707G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62341G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8806G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62341G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47143G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9361G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37229G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12192G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62341G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62341G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27090G>A
  variant of: http://identifiers.org/hgnc/8707
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 8269
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6623
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr569Thr
num of homozygotes: 2
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

5-140812041-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812041
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812041
    reference: chr 5
allele count: 1
allele frequency: 8.268152729317216e-6
allele num: 120946
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62333C>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62333C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62333C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62333C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37237C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16863C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1715C>T
  hgvsp: ENSP00000252085.3:p.Ser572Phe
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55967C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62333C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8814C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42193C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47151C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27098C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62333C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59665C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62333C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12200C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9369C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21854C>T
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser572Phe
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

5-140812043-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812043
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812043
    reference: chr 5
allele count: 12
allele frequency: 9.92375250161261e-5
allele num: 120922
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37239A>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62331A>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42195A>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62331A>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47153A>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16865A>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62331A>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27100A>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62331A>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8816A>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62331A>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1717A>T
  hgvsp: ENSP00000252085.3:p.Thr573Ser
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9371A>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62331A>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21856A>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55969A>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12202A>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62331A>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59667A>T
  variant of: http://identifiers.org/hgnc/8710
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8266
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr573Ser
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD

5-140812045-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812045
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812045
    reference: chr 5
allele count: 86
allele frequency: 7.112846130942535e-4
allele num: 120908
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62329T>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1719T>A
  hgvsp: ENST00000252085.3:c.1719T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8818T>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59669T>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16867T>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55971T>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62329T>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37241T>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47155T>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62329T>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12204T>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42197T>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62329T>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62329T>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62329T>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27102T>A
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62329T>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9373T>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21858T>A
  variant of: http://identifiers.org/hgnc/8713
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr573Thr
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

5-140812046-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812046
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812046
    reference: chr 5
allele count: 1
allele frequency: 8.272667107875579e-6
allele num: 120880
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47156G>A
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16868G>A
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12205G>A
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62328G>A
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62328G>A
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62328G>A
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37242G>A
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21859G>A
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42198G>A
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8819G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1720G>A
  hgvsp: ENSP00000252085.3:p.Gly574Ser
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62328G>A
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62328G>A
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62328G>A
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55972G>A
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62328G>A
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9374G>A
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59670G>A
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27103G>A
  variant of: http://identifiers.org/hgnc/8707
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly574Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

5-140812047-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812047
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812047
    reference: chr 5
allele count: 1
allele frequency: 8.273762245168123e-6
allele num: 120864
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55973G>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62327G>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9375G>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62327G>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47157G>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16869G>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62327G>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62327G>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62327G>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1721G>T
  hgvsp: ENSP00000252085.3:p.Gly574Val
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37243G>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42199G>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59671G>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62327G>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27104G>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12206G>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62327G>T
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21860G>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8820G>T
  variant of: http://identifiers.org/hgnc/8698
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly574Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

5-140812048-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812048
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812048
    reference: chr 5
allele count: 3
allele frequency: 2.48216974731512e-5
allele num: 120862
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62326C>T
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55974C>T
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37244C>T
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27105C>T
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62326C>T
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62326C>T
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62326C>T
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47158C>T
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8821C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9376C>T
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62326C>T
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16870C>T
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1722C>T
  hgvsp: ENST00000252085.3:c.1722C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21861C>T
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62326C>T
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59672C>T
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42200C>T
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12207C>T
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62326C>T
  variant of: http://identifiers.org/hgnc/8702
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly574Gly
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

5-140812049-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812049
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812049
    reference: chr 5
allele count: 1
allele frequency: 8.274309922552459e-6
allele num: 120856
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62325G>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12208G>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37245G>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62325G>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62325G>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16871G>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27106G>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62325G>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62325G>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21862G>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62325G>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59673G>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8822G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1723G>C
  hgvsp: ENSP00000252085.3:p.Val575Leu
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42201G>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9377G>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62325G>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55975G>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47159G>C
  variant of: http://identifiers.org/hgnc/8705
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val575Leu
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD

5-140812050-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812050
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812050
    reference: chr 5
allele count: 1
allele frequency: 8.275816409288777e-6
allele num: 120834
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8823T>C
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62324T>C
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1724T>C
  hgvsp: ENSP00000252085.3:p.Val575Ala
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62324T>C
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37246T>C
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62324T>C
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42202T>C
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27107T>C
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59674T>C
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55976T>C
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16872T>C
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62324T>C
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62324T>C
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62324T>C
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47160T>C
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62324T>C
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12209T>C
  variant of: http://identifiers.org/hgnc/8714
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21863T>C
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9378T>C
  variant of: http://identifiers.org/hgnc/8698
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10699
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val575Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: QD

5-140812060-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 140812060
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 140812060
    reference: chr 5
allele count: 98
allele frequency: 8.131025670809617e-4
allele num: 120526
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262209
  ensembl protein: ENSP00000461862
  ensembl transcript: ENST00000576222
  gene symbol: PCDHGB3
  hgvsc: ENST00000576222.1:c.2415+59684T>G
  variant of: http://identifiers.org/hgnc/8710
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000081853
  ensembl protein: ENSP00000378077
  ensembl transcript: ENST00000394576
  gene symbol: PCDHGA2
  hgvsc: ENST00000394576.2:c.2425-62314T>G
  variant of: http://identifiers.org/hgnc/8700
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253953
  ensembl protein: ENSP00000428288
  ensembl transcript: ENST00000519479
  gene symbol: PCDHGB4
  hgvsc: ENST00000519479.1:c.2397+42212T>G
  variant of: http://identifiers.org/hgnc/8711
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000261934
  ensembl protein: ENSP00000460274
  ensembl transcript: ENST00000573521
  gene symbol: PCDHGA9
  hgvsc: ENST00000573521.1:c.2424+27117T>G
  variant of: http://identifiers.org/hgnc/8707
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253767
  ensembl protein: ENSP00000381605
  ensembl transcript: ENST00000398604
  gene symbol: PCDHGA8
  hgvsc: ENST00000398604.2:c.2424+37256T>G
  variant of: http://identifiers.org/hgnc/8706
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253485
  ensembl protein: ENSP00000429834
  ensembl transcript: ENST00000518069
  gene symbol: PCDHGA5
  hgvsc: ENST00000518069.1:c.2422-62314T>G
  variant of: http://identifiers.org/hgnc/8703
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254245
  ensembl protein: ENSP00000253812
  ensembl transcript: ENST00000253812
  gene symbol: PCDHGA3
  hgvsc: ENST00000253812.6:c.2425-62314T>G
  variant of: http://identifiers.org/hgnc/8701
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000381589
  ensembl transcript: ENST00000398587
  gene symbol: PCDHGA11
  hgvsc: ENST00000398587.2:c.2433+8833T>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000253159
  ensembl protein: ENSP00000252085
  ensembl transcript: ENST00000252085
  gene symbol: PCDHGA12
  hgvsc: ENST00000252085.3:c.1734T>G
  hgvsp: ENST00000252085.3:c.1734T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8699
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253846
  ensembl protein: ENSP00000381611
  ensembl transcript: ENST00000398610
  gene symbol: PCDHGA10
  hgvsc: ENST00000398610.2:c.2436+16882T>G
  variant of: http://identifiers.org/hgnc/8697
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204956
  ensembl protein: ENSP00000431083
  ensembl transcript: ENST00000517417
  gene symbol: PCDHGA1
  hgvsc: ENST00000517417.1:c.2422-62314T>G
  variant of: http://identifiers.org/hgnc/8696
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254221
  ensembl protein: ENSP00000429273
  ensembl transcript: ENST00000523390
  gene symbol: PCDHGB1
  hgvsc: ENST00000523390.1:c.2410-62314T>G
  variant of: http://identifiers.org/hgnc/8708
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253910
  ensembl protein: ENSP00000429018
  ensembl transcript: ENST00000522605
  gene symbol: PCDHGB2
  hgvsc: ENST00000522605.1:c.2422-62314T>G
  variant of: http://identifiers.org/hgnc/8709
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000253873
  ensembl protein: ENSP00000428333
  ensembl transcript: ENST00000518882
  gene symbol: PCDHGA11
  hgvsc: ENST00000518882.1:c.1878+9388T>G
  variant of: http://identifiers.org/hgnc/8698
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253731
  ensembl protein: ENSP00000429601
  ensembl transcript: ENST00000517434
  gene symbol: PCDHGA6
  hgvsc: ENST00000517434.1:c.2424+55986T>G
  variant of: http://identifiers.org/hgnc/8704
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253305
  ensembl protein: ENSP00000428603
  ensembl transcript: ENST00000520790
  gene symbol: PCDHGB6
  hgvsc: ENST00000520790.1:c.2418+21873T>G
  variant of: http://identifiers.org/hgnc/8713
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000262576
  ensembl protein: ENSP00000458570
  ensembl transcript: ENST00000571252
  gene symbol: PCDHGA4
  hgvsc: ENST00000571252.1:c.2422-62314T>G
  variant of: http://identifiers.org/hgnc/8702
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000253537
  ensembl protein: ENSP00000430024
  ensembl transcript: ENST00000518325
  gene symbol: PCDHGA7
  hgvsc: ENST00000518325.1:c.2424+47170T>G
  variant of: http://identifiers.org/hgnc/8705
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000254122
  ensembl protein: ENSP00000381594
  ensembl transcript: ENST00000398594
  gene symbol: PCDHGB7
  hgvsc: ENST00000398594.2:c.2415+12219T>G
  variant of: http://identifiers.org/hgnc/8714
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6619
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala578Ala
num of homozygotes: 0
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2204
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5244
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 6200
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7604
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7433
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6768
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10724
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8067
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3562
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 635
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 246
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 336
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3711
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7347
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4170
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2084
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14196
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22841
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.531e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.89e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.78e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

DP
type: SiteQuality
SIO_000300: 2.425769e6

GenotypeDepth
all individuals: 2204
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3562
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 10723
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8086
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7434
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1189
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 336
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6767
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5243
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7607
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6195
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4166
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14198
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3008
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7352
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3715
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.102e1

MQRankSum
type: SiteQuality
SIO_000300: -1.12e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.097e0

FS
type: SiteQuality
SIO_000300: 4.548e0

VQSLOD
type: SiteQuality
SIO_000300: -2.785e-1

DP
type: SiteQuality
SIO_000300: 2.426163e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeDepth
all individuals: 8085
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7608
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 2204
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5243
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3562
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 635
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 336
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6194
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6767
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1189
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7435
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 91
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 10722
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3007
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14199
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22856
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3712
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7349
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4162
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.175e1

VQSLOD
type: SiteQuality
SIO_000300: -2.607e0

DP
type: SiteQuality
SIO_000300: 2.426292e6

FS
type: SiteQuality
SIO_000300: 7.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.854e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.088e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

GenotypeDepth
all individuals: 336
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3562
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7444
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6768
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2204
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 90
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 3
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 5245
bin: 5.25e1
variant carriers: 1

GenotypeDepth
all individuals: 8097
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1189
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 247
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6176
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7609
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 635
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3711
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22862
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4164
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7343
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14201
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.254e0

DP
type: SiteQuality
SIO_000300: 2.426546e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.01e-1

FS
type: SiteQuality
SIO_000300: 6.255e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.269e1

GenotypeDepth
all individuals: 135
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1189
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7440
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8094
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 10724
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 336
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5242
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7612
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 196
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3562
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 91
bin: 9.25e1
variant carriers: 1

GenotypeDepth
all individuals: 635
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6184
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6767
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2204
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7345
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4164
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14201
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2085
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3710
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3008
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22870
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.388e0

FS
type: SiteQuality
SIO_000300: 6.961e0

QD
type: SiteQuality
SIO_000300: 1.234e1

DP
type: SiteQuality
SIO_000300: 2.426602e6

MQ
type: SiteQuality
SIO_000300: 5.872e1

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.118e0

GenotypeDepth
all individuals: 6767
bin: 4.75e1
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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QD
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FS
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VQSLOD
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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European (Finnish)
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Latino
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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ReadPosRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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East Asian
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South Asian
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European (Non-Finnish)
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Other
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MQRankSum
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DP
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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FS
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MQ
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ReadPosRankSum
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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East Asian
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VQSLOD
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DP
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FS
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MQ
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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European (Finnish)
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QD
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ReadPosRankSum
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MQ
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African
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European (Non-Finnish)
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East Asian
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DP
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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InbreedingCoeff
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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Latino
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African
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European (Finnish)
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South Asian
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MQ
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East Asian
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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DP
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QD
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MQ
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Non-Finnish)
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Latino
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QD
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ClippingRankSum
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FS
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VQSLOD
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ReadPosRankSum
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DP
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MQRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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VQSLOD
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FS
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DP
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ReadPosRankSum
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MQ
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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East Asian
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Latino
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European (Non-Finnish)
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Other
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MQ
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MQRankSum
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QD
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FS
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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Latino
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South Asian
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European (Non-Finnish)
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East Asian
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ReadPosRankSum
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InbreedingCoeff
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DP
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MQ
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MQRankSum
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VQSLOD
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FS
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QD
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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East Asian
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Latino
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Other
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European (Non-Finnish)
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QD
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VQSLOD
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ReadPosRankSum
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MQ
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FS
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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Latino
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South Asian
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MQ
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FS
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MQRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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Other
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South Asian
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FS
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InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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MQRankSum
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DP
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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Latino
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East Asian
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African
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European (Non-Finnish)
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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FS
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DP
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QD
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VQSLOD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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East Asian
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European (Non-Finnish)
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Latino
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MQ
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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Other
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MQ
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DP
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FS
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QD
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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South Asian
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European (Finnish)
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East Asian
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Other
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MQ
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VQSLOD
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FS
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MQRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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InbreedingCoeff
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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Other
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East Asian
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European (Non-Finnish)
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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MQ
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BaseQRankSum
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DP
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ReadPosRankSum
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FS
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QD
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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Latino
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African
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East Asian
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European (Finnish)
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European (Non-Finnish)
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MQ
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FS
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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MQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Finnish)
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South Asian
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East Asian
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African
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Latino
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European (Non-Finnish)
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ClippingRankSum
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BaseQRankSum
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FS
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InbreedingCoeff
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MQ
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MQRankSum
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DP
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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South Asian
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VQSLOD
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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ReadPosRankSum
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MQ
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DP
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FS
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QD
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South Asian
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InbreedingCoeff
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DP
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FS
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VQSLOD
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MQ
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African
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Other
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FS
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VQSLOD
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ClippingRankSum
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MQRankSum
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MQ
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QD
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InbreedingCoeff
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DP
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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East Asian
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Latino
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South Asian
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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South Asian
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European (Non-Finnish)
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MQ
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DP
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European (Finnish)
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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African
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ClippingRankSum
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InbreedingCoeff
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MQ
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FS
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MQRankSum
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BaseQRankSum
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QD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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South Asian
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DP
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QD
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FS
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InbreedingCoeff
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MQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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East Asian
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European (Finnish)
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African
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European (Non-Finnish)
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MQRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
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MQ
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ReadPosRankSum
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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South Asian
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European (Non-Finnish)
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Other
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FS
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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QD
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DP
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Other
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South Asian
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Latino
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East Asian
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European (Finnish)
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FS
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BaseQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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DP
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InbreedingCoeff
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Finnish)
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South Asian
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MQ
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DP
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501501501501501e-5
allele num: 66600
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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DP
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MQ
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
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allele count: 8
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allele num: 66600
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele num: 10278
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Other
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South Asian
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QD
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VQSLOD
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MQ
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FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10266
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 5.607e1

MQRankSum
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InbreedingCoeff
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BaseQRankSum
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DP
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FS
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VQSLOD
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502178158329578e-5
allele num: 66570
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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DP
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SIO_000300: 2.415999e6

MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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MQ
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QD
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 120

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 4
allele frequency: 3.457814661134163e-4
allele num: 11568
num of homozygotes: 0

African
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allele count: 117
allele frequency: 1.142578125e-2
allele num: 10240
num of homozygotes: 2

East Asian
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allele count: 0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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InbreedingCoeff
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ClippingRankSum
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QD
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VQSLOD
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MQ
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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FS
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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European (Finnish)
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East Asian
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European (Non-Finnish)
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Latino
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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MQ
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FS
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VQSLOD
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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Latino
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European (Finnish)
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South Asian
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African
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European (Non-Finnish)
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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VQSLOD
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DP
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MQRankSum
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FS
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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Other
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Latino
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African
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South Asian
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European (Finnish)
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allele count: 54
allele frequency: 8.171912832929782e-3
allele num: 6608
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ClippingRankSum
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FS
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MQ
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VQSLOD
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BaseQRankSum
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DP
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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East Asian
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Latino
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South Asian
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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DP
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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European (Non-Finnish)
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South Asian
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African
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Latino
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East Asian
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DP
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InbreedingCoeff
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BaseQRankSum
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FS
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MQ
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QD
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.831e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.1e-1

QD
type: SiteQuality
SIO_000300: 1.162e1

MQ
type: SiteQuality
SIO_000300: 5.545e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

DP
type: SiteQuality
SIO_000300: 2.428311e6

VQSLOD
type: SiteQuality
SIO_000300: -1.604e-1

GenotypeDepth
all individuals: 232
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 7560
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 8262
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 102
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1115
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2174
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 326
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 6624
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 288
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 336
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 10708
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 625
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7489
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 5140
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13054
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3011
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3750
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4246
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7562
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23088
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.94e0

DP
type: SiteQuality
SIO_000300: 2.427736e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

VQSLOD
type: SiteQuality
SIO_000300: -1.9e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.575e1

FS
type: SiteQuality
SIO_000300: 3.697e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.139e1

GenotypeDepth
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5713
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7559
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 242
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 106
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7489
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 316
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1115
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 625
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5140
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3477
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 8258
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 335
bin: 9.75e1
variant carriers: 1

GenotypeDepth
all individuals: 6625
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13054
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3012
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3749
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4245
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7565
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23025
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66442
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.701e0

VQSLOD
type: SiteQuality
SIO_000300: -1.359e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.1e-2

MQ
type: SiteQuality
SIO_000300: 5.65e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

DP
type: SiteQuality
SIO_000300: 2.426954e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.213e1

GenotypeDepth
all individuals: 89
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5526
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 8226
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 369
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 325
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 529
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 5140
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 3477
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 7556
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1115
bin: 6.75e1
variant carriers: 1

GenotypeDepth
all individuals: 346
bin: 9.75e1
variant carriers: 97

GenotypeDepth
all individuals: 207
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 7483
bin: 3.75e1
variant carriers: 1

GenotypeDepth
all individuals: 10481
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2174
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 167
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4237
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22618
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13056
bin: 9.75e1
variant carriers: 96

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3222
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 115
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3007
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3751
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7503
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 7
allele frequency: 6.055363321799307e-4
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.981767736821245e-4
allele num: 10092
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.222222222222222e-3
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.424536307431204e-4
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 4.678680310302152e-4
allele num: 66258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 52
allele frequency: 7.874015748031496e-3
allele num: 6604
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.16e1

FS
type: SiteQuality
SIO_000300: 4.9851e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.71e0

VQSLOD
type: SiteQuality
SIO_000300: -2.018e1

MQRankSum
type: SiteQuality
SIO_000300: -8.756e0

DP
type: SiteQuality
SIO_000300: 2.422114e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.011e0