6-144033235-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033235
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033235
    reference: chr 6
allele count: 1
allele frequency: 8.44095551616443e-6
allele num: 118470
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.96G>A
  hgvsp: ENST00000305766.6:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33889G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.129G>A
  hgvsp: ENST00000440869.2:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.300G>A
  hgvsp: ENST00000367584.4:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.129G>A
  hgvsp: ENST00000367582.3:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.129G>A
  hgvsp: ENST00000397980.3:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.120G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.129G>A
  hgvsp: ENST00000451827.2:c.129G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.274G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.96G>A
  hgvsp: ENST00000427704.2:c.96G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14475
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8901
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly43Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

6-144033243-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033243
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033243
    reference: chr 6
allele count: 1
allele frequency: 8.446516656530846e-6
allele num: 118392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33897C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.137C>G
  hgvsp: ENSP00000381067.3:p.Ser46Cys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.308C>G
  hgvsp: ENSP00000356556.4:p.Ser103Cys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.104C>G
  hgvsp: ENSP00000305530.6:p.Ser35Cys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.282C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.137C>G
  hgvsp: ENSP00000356554.3:p.Ser46Cys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.104C>G
  hgvsp: ENSP00000391763.2:p.Ser35Cys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.137C>G
  hgvsp: ENSP00000417038.2:p.Ser46Cys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.128C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.137C>G
  hgvsp: ENSP00000402449.2:p.Ser46Cys
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5658
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser46Cys
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ

6-144033244-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033244
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033244
    reference: chr 6
allele count: 1
allele frequency: 8.447943770486263e-6
allele num: 118372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.105C>T
  hgvsp: ENST00000427704.2:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.138C>T
  hgvsp: ENST00000367582.3:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.138C>T
  hgvsp: ENST00000451827.2:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.105C>T
  hgvsp: ENST00000305766.6:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.138C>T
  hgvsp: ENST00000397980.3:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.138C>T
  hgvsp: ENST00000440869.2:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.129C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.309C>T
  hgvsp: ENST00000367584.4:c.309C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33898C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.283C>T
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5664
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8381
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser46Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

6-144033249-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033249
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033249
    reference: chr 6
allele count: 2
allele frequency: 1.690417025880285e-5
allele num: 118314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33903T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.143T>C
  hgvsp: ENSP00000417038.2:p.Ile48Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.143T>C
  hgvsp: ENSP00000356554.3:p.Ile48Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.110T>C
  hgvsp: ENSP00000391763.2:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.314T>C
  hgvsp: ENSP00000356556.4:p.Ile105Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.134T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.110T>C
  hgvsp: ENSP00000305530.6:p.Ile37Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.143T>C
  hgvsp: ENSP00000381067.3:p.Ile48Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.288T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.143T>C
  hgvsp: ENSP00000402449.2:p.Ile48Thr
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16543
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ile48Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff

6-144033250-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033250
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033250
    reference: chr 6
allele count: 1
allele frequency: 8.456945689494782e-6
allele num: 118246
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.144T>A
  hgvsp: ENST00000451827.2:c.144T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.111T>A
  hgvsp: ENST00000427704.2:c.111T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33904T>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.144T>A
  hgvsp: ENST00000367582.3:c.144T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.111T>A
  hgvsp: ENST00000305766.6:c.111T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.144T>A
  hgvsp: ENST00000397980.3:c.144T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.315T>A
  hgvsp: ENST00000367584.4:c.315T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.144T>A
  hgvsp: ENST00000440869.2:c.144T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.135T>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.289T>A
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1452
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8897
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile48Ile
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

6-144033260-T-TTTAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033260
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033264
    reference: chr 6
allele count: 1
allele frequency: 8.488099684242691e-6
allele num: 117812
alternate allele: TTTAA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.122_125dupTTAA
  hgvsp: ENSP00000305530.6:p.Lys42AsnfsTer2
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33915_46+33918dupTTAA
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.122_125dupTTAA
  hgvsp: ENSP00000391763.2:p.Lys42AsnfsTer2
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.155_158dupTTAA
  hgvsp: ENSP00000417038.2:p.Lys53AsnfsTer2
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.155_158dupTTAA
  hgvsp: ENSP00000356554.3:p.Lys53AsnfsTer2
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.326_329dupTTAA
  hgvsp: ENSP00000356556.4:p.Lys110AsnfsTer2
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.155_158dupTTAA
  hgvsp: ENSP00000381067.3:p.Lys53AsnfsTer2
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.155_158dupTTAA
  hgvsp: ENSP00000402449.2:p.Lys53AsnfsTer2
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.300_303dupTTAA
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.146_149dupTTAA
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8894
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys53AsnfsTer2
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

6-144033268-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033268
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033268
    reference: chr 6
allele count: 27
allele frequency: 2.304894913865223e-4
allele num: 117142
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.162T>C
  hgvsp: ENST00000367582.3:c.162T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.129T>C
  hgvsp: ENST00000305766.6:c.129T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33922T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.307T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.129T>C
  hgvsp: ENST00000427704.2:c.129T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.162T>C
  hgvsp: ENST00000451827.2:c.162T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.162T>C
  hgvsp: ENST00000397980.3:c.162T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.162T>C
  hgvsp: ENST00000440869.2:c.162T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.333T>C
  hgvsp: ENST00000367584.4:c.333T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.153T>C
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8896
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14347
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 9.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2533
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro54Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum

6-144033272-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033272
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033272
    reference: chr 6
allele count: 1
allele frequency: 8.576770674305711e-6
allele num: 116594
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.157A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.337A>G
  hgvsp: ENSP00000356556.4:p.Lys113Glu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.133A>G
  hgvsp: ENSP00000391763.2:p.Lys45Glu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.166A>G
  hgvsp: ENSP00000381067.3:p.Lys56Glu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33926A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.166A>G
  hgvsp: ENSP00000356554.3:p.Lys56Glu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.166A>G
  hgvsp: ENSP00000417038.2:p.Lys56Glu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.133A>G
  hgvsp: ENSP00000305530.6:p.Lys45Glu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.166A>G
  hgvsp: ENSP00000402449.2:p.Lys56Glu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.311A>G
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16510
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8893
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8356
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys56Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

6-144033280-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033280
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033280
    reference: chr 6
allele count: 3
allele frequency: 2.58875101392748e-5
allele num: 115886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.141G>A
  hgvsp: ENST00000427704.2:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.174G>A
  hgvsp: ENST00000367582.3:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.345G>A
  hgvsp: ENST00000367584.4:c.345G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33934G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.174G>A
  hgvsp: ENST00000440869.2:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.174G>A
  hgvsp: ENST00000451827.2:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.319G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.141G>A
  hgvsp: ENST00000305766.6:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.165G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.174G>A
  hgvsp: ENST00000397980.3:c.174G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg58Arg
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

6-144033295-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033295
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033295
    reference: chr 6
allele count: 7
allele frequency: 6.147253056062948e-5
allele num: 113872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.156C>T
  hgvsp: ENST00000427704.2:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33949C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.189C>T
  hgvsp: ENST00000440869.2:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.189C>T
  hgvsp: ENST00000367582.3:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.156C>T
  hgvsp: ENST00000305766.6:c.156C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.189C>T
  hgvsp: ENST00000397980.3:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.334C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.189C>T
  hgvsp: ENST00000451827.2:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.360C>T
  hgvsp: ENST00000367584.4:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.180C>T
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16459
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4622
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13668
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4434
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser63Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

6-144033315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033315
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033315
    reference: chr 6
allele count: 1
allele frequency: 8.972794487115067e-6
allele num: 111448
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.209C>T
  hgvsp: ENSP00000417038.2:p.Ser70Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.176C>T
  hgvsp: ENSP00000305530.6:p.Ser59Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.380C>T
  hgvsp: ENSP00000356556.4:p.Ser127Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.209C>T
  hgvsp: ENSP00000402449.2:p.Ser70Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.209C>T
  hgvsp: ENSP00000381067.3:p.Ser70Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.176C>T
  hgvsp: ENSP00000391763.2:p.Ser59Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.209C>T
  hgvsp: ENSP00000356554.3:p.Ser70Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.200C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.354C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33969C>T
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser70Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

6-144033316-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033316
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033316
    reference: chr 6
allele count: 4
allele frequency: 3.589890867317634e-5
allele num: 111424
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.210G>A
  hgvsp: ENST00000451827.2:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.210G>A
  hgvsp: ENST00000440869.2:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.177G>A
  hgvsp: ENST00000305766.6:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.355G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.210G>A
  hgvsp: ENST00000397980.3:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.381G>A
  hgvsp: ENST00000367584.4:c.381G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.210G>A
  hgvsp: ENST00000367582.3:c.210G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.177G>A
  hgvsp: ENST00000427704.2:c.177G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.201G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33970G>A
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13408
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser70Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-144033316-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033316
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033316
    reference: chr 6
allele count: 9
allele frequency: 8.077254451464676e-5
allele num: 111424
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.210G>T
  hgvsp: ENST00000367582.3:c.210G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.210G>T
  hgvsp: ENST00000451827.2:c.210G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.177G>T
  hgvsp: ENST00000305766.6:c.177G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.201G>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.177G>T
  hgvsp: ENST00000427704.2:c.177G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.210G>T
  hgvsp: ENST00000397980.3:c.210G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.381G>T
  hgvsp: ENST00000367584.4:c.381G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.210G>T
  hgvsp: ENST00000440869.2:c.210G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.355G>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33970G>T
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13408
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3304
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser70Ser
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

6-144033324-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033324
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033324
    reference: chr 6
allele count: 1
allele frequency: 9.039302888961204e-6
allele num: 110628
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.214+4T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.214+4T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.209T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.214+4T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+33978T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.385+4T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.181+4T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.359+4T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.181+4T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.214+4T>C
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13352
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16382
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1980
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
hgvs: c.214+4T>C
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

6-144033365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033365
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033365
    reference: chr 6
allele count: 1
allele frequency: 9.36996364454106e-6
allele num: 106724
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.214+45C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+34019C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.214+45C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.359+45C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.214+45C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.385+45C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.181+45C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.250C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.214+45C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.181+45C>T
  variant of: http://identifiers.org/hgnc/20956
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3071
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4320
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9336
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2378
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3415
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3022
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP

6-144033366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144033366
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144033366
    reference: chr 6
allele count: 15278
allele frequency: 1.439772320334734e-1
allele num: 106114
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.214+46G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.359+46G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.214+46G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.181+46G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.214+46G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000545919
  gene symbol: PHACTR2
  hgvsc: ENST00000545919.1:n.251G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.385+46G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.181+46G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.46+34020G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.214+46G>A
  variant of: http://identifiers.org/hgnc/20956
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 5.25e1
  variant carriers: 408
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 1.25e1
  variant carriers: 445
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 2.5e0
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 6.25e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 9271
  bin: 2.75e1
  variant carriers: 2455
genotype depth: GenotypeDepth
  all individuals: 7693
  bin: 2.25e1
  variant carriers: 1768
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 7.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 9.75e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 1.75e1
  variant carriers: 967
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 3.75e1
  variant carriers: 1939
genotype depth: GenotypeDepth
  all individuals: 9904
  bin: 3.25e1
  variant carriers: 2499
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.75e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 3410
  bin: 7.5e0
  variant carriers: 635
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 4.25e1
  variant carriers: 1267
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 2269
  bin: 4.75e1
  variant carriers: 748
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 5.75e1
  variant carriers: 272
genotype quality: GenotypeQuality
  all individuals: 2766
  bin: 3.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 2598
  bin: 4.75e1
  variant carriers: 91
genotype quality: GenotypeQuality
  all individuals: 18417
  bin: 9.75e1
  variant carriers: 12872
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 3.25e1
  variant carriers: 29
num of homozygotes: 1510
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-144070079-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070079
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070079
    reference: chr 6
allele count: 1
allele frequency: 1.111753457553253e-5
allele num: 89948
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.182-43A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.15A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.215-43A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.182-43A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.360-43A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.47-43A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.215-43A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.215-43A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.386-43A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.215-43A>C
  variant of: http://identifiers.org/hgnc/20956
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12957
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17530
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9812
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4429
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2630
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-144070080-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070080
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070080
    reference: chr 6
allele count: 1
allele frequency: 1.11158044507681e-5
allele num: 89962
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.182-42A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.182-42A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.386-42A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.215-42A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.16A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.215-42A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.360-42A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.47-42A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.215-42A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.215-42A>C
  variant of: http://identifiers.org/hgnc/20956
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7958
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17365
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3358
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2891
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

6-144070090-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070090
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070090
    reference: chr 6
allele count: 1
allele frequency: 1.09013212401343e-5
allele num: 91732
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.386-32T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.182-32T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.360-32T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.215-32T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.182-32T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.215-32T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.215-32T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.26T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.215-32T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.47-32T>C
  variant of: http://identifiers.org/hgnc/20956
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17320
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14354
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6367
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1387
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13281
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

6-144070094-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070094
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070094
    reference: chr 6
allele count: 1
allele frequency: 1.079074585635359e-5
allele num: 92672
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.30T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.47-28T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.182-28T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.215-28T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.215-28T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.386-28T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.360-28T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.182-28T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.215-28T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.215-28T>G
  variant of: http://identifiers.org/hgnc/20956
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12776
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19837
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13223
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

6-144070106-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070106
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070106
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 98168
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.47-16T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.386-16T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.182-16T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.42T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.182-16T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.215-16T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.215-16T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.215-16T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.215-16T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.360-16T>G
  variant of: http://identifiers.org/hgnc/20956
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10651
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28308
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2429
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

6-144070107-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070107
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070107
    reference: chr 6
allele count: 1
allele frequency: 1.013089111318232e-5
allele num: 98708
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.182-15T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.215-15T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.360-15T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.215-15T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.182-15T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.215-15T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.43T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.386-15T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.215-15T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.47-15T>C
  variant of: http://identifiers.org/hgnc/20956
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5834
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6837
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11029
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

6-144070108-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070108
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070108
    reference: chr 6
allele count: 1
allele frequency: 1.008186474170263e-5
allele num: 99188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.215-14G>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.47-14G>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.215-14G>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.360-14G>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.182-14G>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.44G>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.386-14G>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.182-14G>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.215-14G>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.215-14G>C
  variant of: http://identifiers.org/hgnc/20956
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29514
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5948
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-144070123-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070123
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070123
    reference: chr 6
allele count: 1
allele frequency: 9.413891137762884e-6
allele num: 106226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.387A>G
  hgvsp: ENST00000367584.4:c.387A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.48A>G
  hgvsp: ENST00000542769.1:c.48A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.216A>G
  hgvsp: ENST00000440869.2:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.216A>G
  hgvsp: ENST00000367582.3:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.183A>G
  hgvsp: ENST00000427704.2:c.183A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.59A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.361A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.216A>G
  hgvsp: ENST00000397980.3:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.216A>G
  hgvsp: ENST00000451827.2:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.183A>G
  hgvsp: ENST00000305766.6:c.183A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7605
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7052
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34861
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.216A>G
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

6-144070127-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070127
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070127
    reference: chr 6
allele count: 1
allele frequency: 9.236851342114501e-6
allele num: 108262
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.52G>C
  hgvsp: ENSP00000442153.1:p.Glu18Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.365G>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.187G>C
  hgvsp: ENSP00000305530.6:p.Glu63Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.220G>C
  hgvsp: ENSP00000381067.3:p.Glu74Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.220G>C
  hgvsp: ENSP00000417038.2:p.Glu74Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.63G>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.220G>C
  hgvsp: ENSP00000402449.2:p.Glu74Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.220G>C
  hgvsp: ENSP00000356554.3:p.Glu74Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.187G>C
  hgvsp: ENSP00000391763.2:p.Glu63Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.391G>C
  hgvsp: ENSP00000356556.4:p.Glu131Gln
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7978
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6061
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36340
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu74Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

6-144070136-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070136
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070136
    reference: chr 6
allele count: 1
allele frequency: 8.947905295370353e-6
allele num: 111758
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.61A>T
  hgvsp: ENSP00000442153.1:p.Ile21Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.72A>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.229A>T
  hgvsp: ENSP00000381067.3:p.Ile77Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.229A>T
  hgvsp: ENSP00000356554.3:p.Ile77Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.196A>T
  hgvsp: ENSP00000305530.6:p.Ile66Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.400A>T
  hgvsp: ENSP00000356556.4:p.Ile134Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.374A>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.196A>T
  hgvsp: ENSP00000391763.2:p.Ile66Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.229A>T
  hgvsp: ENSP00000402449.2:p.Ile77Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.229A>T
  hgvsp: ENSP00000417038.2:p.Ile77Leu
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38718
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile77Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

6-144070140-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070140
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070140
    reference: chr 6
allele count: 2
allele frequency: 1.773898852287443e-5
allele num: 112746
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.233C>T
  hgvsp: ENSP00000356554.3:p.Ser78Phe
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.200C>T
  hgvsp: ENSP00000391763.2:p.Ser67Phe
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.404C>T
  hgvsp: ENSP00000356556.4:p.Ser135Phe
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.233C>T
  hgvsp: ENSP00000402449.2:p.Ser78Phe
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.200C>T
  hgvsp: ENSP00000305530.6:p.Ser67Phe
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.76C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.233C>T
  hgvsp: ENSP00000381067.3:p.Ser78Phe
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.233C>T
  hgvsp: ENSP00000417038.2:p.Ser78Phe
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.378C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.65C>T
  hgvsp: ENSP00000442153.1:p.Ser22Phe
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8769
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser78Phe
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/6-144070142-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070142
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070142
    reference: chr 6
allele count: 1
allele frequency: 8.835483300936561e-6
allele num: 113180
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.235A>C
  hgvsp: ENSP00000381067.3:p.Thr79Pro
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.202A>C
  hgvsp: ENSP00000305530.6:p.Thr68Pro
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.406A>C
  hgvsp: ENSP00000356556.4:p.Thr136Pro
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.235A>C
  hgvsp: ENSP00000356554.3:p.Thr79Pro
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.78A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.67A>C
  hgvsp: ENSP00000442153.1:p.Thr23Pro
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.202A>C
  hgvsp: ENSP00000391763.2:p.Thr68Pro
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.380A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.235A>C
  hgvsp: ENSP00000417038.2:p.Thr79Pro
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.235A>C
  hgvsp: ENSP00000402449.2:p.Thr79Pro
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr79Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

6-144070146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070146
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070146
    reference: chr 6
allele count: 1
allele frequency: 8.800647727672756e-6
allele num: 113628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.239G>A
  hgvsp: ENSP00000356554.3:p.Arg80Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.239G>A
  hgvsp: ENSP00000402449.2:p.Arg80Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.206G>A
  hgvsp: ENSP00000391763.2:p.Arg69Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.71G>A
  hgvsp: ENSP00000442153.1:p.Arg24Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.206G>A
  hgvsp: ENSP00000305530.6:p.Arg69Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.239G>A
  hgvsp: ENSP00000381067.3:p.Arg80Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.82G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.239G>A
  hgvsp: ENSP00000417038.2:p.Arg80Gln
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.384G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.410G>A
  hgvsp: ENSP00000356556.4:p.Arg137Gln
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg80Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD

6-144070152-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070152
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070152
    reference: chr 6
allele count: 1
allele frequency: 8.757641041808978e-6
allele num: 114186
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.245G>C
  hgvsp: ENSP00000381067.3:p.Ser82Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.390G>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.212G>C
  hgvsp: ENSP00000391763.2:p.Ser71Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.245G>C
  hgvsp: ENSP00000417038.2:p.Ser82Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.245G>C
  hgvsp: ENSP00000402449.2:p.Ser82Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.245G>C
  hgvsp: ENSP00000356554.3:p.Ser82Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.77G>C
  hgvsp: ENSP00000442153.1:p.Ser26Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.416G>C
  hgvsp: ENSP00000356556.4:p.Ser139Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.88G>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.212G>C
  hgvsp: ENSP00000305530.6:p.Ser71Thr
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9297
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser82Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

6-144070156-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070156
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070156
    reference: chr 6
allele count: 1
allele frequency: 8.744469123279526e-6
allele num: 114358
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.81A>G
  hgvsp: ENST00000542769.1:c.81A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.420A>G
  hgvsp: ENST00000367584.4:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.249A>G
  hgvsp: ENST00000397980.3:c.249A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.216A>G
  hgvsp: ENST00000427704.2:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.216A>G
  hgvsp: ENST00000305766.6:c.216A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.249A>G
  hgvsp: ENST00000440869.2:c.249A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.249A>G
  hgvsp: ENST00000451827.2:c.249A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.249A>G
  hgvsp: ENST00000367582.3:c.249A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.92A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.394A>G
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3120
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3653
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg83Arg
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

6-144070160-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070160
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070160
    reference: chr 6
allele count: 2
allele frequency: 1.748068384435199e-5
allele num: 114412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.424G>A
  hgvsp: ENSP00000356556.4:p.Glu142Lys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.220G>A
  hgvsp: ENSP00000305530.6:p.Glu74Lys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.253G>A
  hgvsp: ENSP00000417038.2:p.Glu85Lys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.220G>A
  hgvsp: ENSP00000391763.2:p.Glu74Lys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.398G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.253G>A
  hgvsp: ENSP00000356554.3:p.Glu85Lys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.85G>A
  hgvsp: ENSP00000442153.1:p.Glu29Lys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.96G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.253G>A
  hgvsp: ENSP00000381067.3:p.Glu85Lys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.253G>A
  hgvsp: ENSP00000402449.2:p.Glu85Lys
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9518
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39395
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu85Lys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

6-144070183-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070183
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070183
    reference: chr 6
allele count: 1
allele frequency: 8.818653215280963e-6
allele num: 113396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.276T>A
  hgvsp: ENST00000397980.3:c.276T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.119T>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.276T>A
  hgvsp: ENST00000440869.2:c.276T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.243T>A
  hgvsp: ENST00000427704.2:c.243T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.276T>A
  hgvsp: ENST00000367582.3:c.276T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.421T>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.108T>A
  hgvsp: ENST00000542769.1:c.108T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.243T>A
  hgvsp: ENST00000305766.6:c.243T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.276T>A
  hgvsp: ENST00000451827.2:c.276T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.447T>A
  hgvsp: ENST00000367584.4:c.447T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5122
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu92Leu
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP

6-144070203-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070203
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070203
    reference: chr 6
allele count: 1
allele frequency: 9.30076824345691e-6
allele num: 107518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.440+1G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.466+1G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.138+1G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.127+1G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+1G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.295+1G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.295+1G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.262+1G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.262+1G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.295+1G>A
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9331
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29585
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11550
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36693
  bin: 6.25e1
  variant carriers: 0
hgvs: c.295+1G>A
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

6-144070206-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070206
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070206
    reference: chr 6
allele count: 1
allele frequency: 9.438592517083852e-6
allele num: 105948
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.440+4A>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.262+4A>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.295+4A>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.466+4A>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.295+4A>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.262+4A>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.127+4A>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.295+4A>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4A>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.138+4A>T
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8900
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8389
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 3.75e1
  variant carriers: 0
hgvs: c.295+4A>T
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-144070215-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070215
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070215
    reference: chr 6
allele count: 18
allele frequency: 1.765917786716374e-4
allele num: 101930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.138+13A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.127+13A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.262+13A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+13A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.295+13A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.262+13A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.440+13A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.295+13A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.295+13A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.466+13A>C
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1749
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13554
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21293
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8381
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7474
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18496
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2367
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP

6-144070217-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070217
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070217
    reference: chr 6
allele count: 8
allele frequency: 7.92974248161291e-5
allele num: 100886
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.295+15C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.295+15C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.440+15C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.262+15C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.295+15C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+15C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.127+15C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.262+15C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.138+15C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.466+15C>T
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8618
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7196
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14777
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

6-144070218-ATACATTT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070218
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070211
    reference: chr 6
allele count: 1
allele frequency: 9.956589270779402e-6
allele num: 100436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.466+19_466+25delCATTTTA
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.138+19_138+25delCATTTTA
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.295+19_295+25delCATTTTA
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.295+19_295+25delCATTTTA
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+19_295+25delCATTTTA
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.262+19_262+25delCATTTTA
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.295+19_295+25delCATTTTA
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.127+19_127+25delCATTTTA
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.440+19_440+25delCATTTTA
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.262+19_262+25delCATTTTA
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18345
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15827
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8834
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1725
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: ATACATTT
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP

6-144070237-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070237
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070237
    reference: chr 6
allele count: 1
allele frequency: 1.080590434613473e-5
allele num: 92542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.295+35G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.127+35G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.262+35G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.262+35G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.295+35G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.138+35G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+35G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.295+35G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.440+35G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.466+35G>A
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5254
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5488
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

6-144070237-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070237
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070237
    reference: chr 6
allele count: 1
allele frequency: 1.080590434613473e-5
allele num: 92542
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.127+35G>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.295+35G>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.262+35G>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.466+35G>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.262+35G>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.295+35G>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.295+35G>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.138+35G>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.440+35G>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+35G>T
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2933
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4194
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24417
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

6-144070239-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070239
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070239
    reference: chr 6
allele count: 5
allele frequency: 5.47981237122441e-5
allele num: 91244
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.466+37C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.138+37C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.440+37C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.262+37C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.262+37C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.295+37C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.295+37C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.295+37C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.127+37C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+37C>T
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9304
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21080
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5544
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5646
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD

6-144070247-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070247
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070247
    reference: chr 6
allele count: 2
allele frequency: 2.350176263219741e-5
allele num: 85100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+45C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.295+45C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.127+45C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.262+45C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.295+45C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.295+45C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.262+45C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.440+45C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.138+45C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.466+45C>G
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1422
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10484
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1193
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5152
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18961
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3758
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-144070252-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070252
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070251
    reference: chr 6
allele count: 3
allele frequency: 3.670532961385993e-5
allele num: 81732
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.466+55delT
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+55delT
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.262+55delT
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.262+55delT
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.138+55delT
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.127+55delT
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.295+55delT
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.295+55delT
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.295+55delT
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.440+55delT
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14924
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18022
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2357
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2307
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: GT
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

6-144070254-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144070254
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144070254
    reference: chr 6
allele count: 1
allele frequency: 1.519756838905775e-5
allele num: 65800
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.295+52T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.295+52T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+52T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.127+52T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.138+52T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.295+52T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.440+52T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.466+52T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.262+52T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.262+52T>G
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18116
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2692
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1358
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11123
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5388
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

6-144074843-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074843
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074843
    reference: chr 6
allele count: 1
allele frequency: 9.450366674226959e-6
allele num: 105816
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.296-48T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.128-48T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4641T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.441-48T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.263-48T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.296-48T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.296-48T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.467-48T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.263-48T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.139-48T>G
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13743
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13075
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1089
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8556
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5504
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum

6-144074850-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074850
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074850
    reference: chr 6
allele count: 1
allele frequency: 9.432182607055272e-6
allele num: 106020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.467-41G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.296-41G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.441-41G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.139-41G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.296-41G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.296-41G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.263-41G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.128-41G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4648G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.263-41G>A
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20905
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9130
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11073
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6460
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27162
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-144074855-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074855
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074855
    reference: chr 6
allele count: 2
allele frequency: 1.876348625574632e-5
allele num: 106590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.263-36C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.296-36C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.296-36C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.263-36C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.128-36C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4653C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.296-36C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.467-36C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.441-36C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.139-36C>T
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9261
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9847
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24833
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2711
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1468
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3436
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum

6-144074857-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074857
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074857
    reference: chr 6
allele count: 1
allele frequency: 9.328706295011009e-6
allele num: 107196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.296-34A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.467-34A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.263-34A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4655A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.263-34A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.128-34A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.296-34A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.139-34A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.296-34A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.441-34A>G
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3005
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8380
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6167
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26513
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2708
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3513
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6112
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD

6-144074867-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074867
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074867
    reference: chr 6
allele count: 1
allele frequency: 9.21438180712456e-6
allele num: 108526
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.263-24C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.441-24C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.263-24C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.296-24C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.128-24C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.139-24C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.467-24C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4665C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.296-24C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.296-24C>T
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1828
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5915
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29830
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

6-144074870-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074870
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074870
    reference: chr 6
allele count: 1
allele frequency: 9.150805270863836e-6
allele num: 109280
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.441-21G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.296-21G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4668G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.296-21G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.128-21G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.263-21G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.263-21G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.296-21G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.139-21G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.467-21G>A
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4962
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2311
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5496
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

6-144074871-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074871
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074871
    reference: chr 6
allele count: 8
allele frequency: 7.308071765264735e-5
allele num: 109468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.128-20G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.296-20G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.296-20G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.139-20G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.441-20G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4669G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.467-20G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.263-20G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.263-20G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.296-20G>A
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5349
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31307
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1548
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD

6-144074873-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074873
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074873
    reference: chr 6
allele count: 1
allele frequency: 9.098849905371961e-6
allele num: 109904
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.296-18G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.296-18G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.467-18G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.128-18G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.441-18G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.296-18G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.263-18G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.139-18G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4671G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.263-18G>A
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2913
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11679
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1439
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-144074877-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074877
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074877
    reference: chr 6
allele count: 1
allele frequency: 9.035056017347308e-6
allele num: 110680
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4675C>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.296-14C>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.139-14C>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.441-14C>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.296-14C>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.467-14C>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.296-14C>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.263-14C>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.263-14C>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.128-14C>A
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11981
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32518
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4891
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3909
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: QD

6-144074877-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074877
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074877
    reference: chr 6
allele count: 6
allele frequency: 5.421033610408385e-5
allele num: 110680
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4675C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.296-14C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.441-14C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.263-14C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.296-14C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.139-14C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.263-14C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.296-14C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.467-14C>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.128-14C>G
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32518
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11981
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4891
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

6-144074883-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074883
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074883
    reference: chr 6
allele count: 4
allele frequency: 3.56385537874873e-5
allele num: 112238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.139-8C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.263-8C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.128-8C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.263-8C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4681C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.467-8C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.296-8C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.296-8C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.296-8C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.441-8C>T
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12633
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4050
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33557
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3078
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2923
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4204
  bin: 2.25e1
  variant carriers: 0
hgvs: c.296-8C>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-144074901-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074901
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074901
    reference: chr 6
allele count: 1
allele frequency: 8.592098706029935e-6
allele num: 116386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.138A>T
  hgvsp: ENST00000542769.1:c.138A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.273A>T
  hgvsp: ENST00000427704.2:c.273A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4699A>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.477A>T
  hgvsp: ENST00000367584.4:c.477A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.306A>T
  hgvsp: ENST00000397980.3:c.306A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.306A>T
  hgvsp: ENST00000440869.2:c.306A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.149A>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.306A>T
  hgvsp: ENST00000367582.3:c.306A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.273A>T
  hgvsp: ENST00000305766.6:c.273A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.451A>T
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val102Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/6-144074904-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074904
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074904
    reference: chr 6
allele count: 2
allele frequency: 1.708496352360288e-5
allele num: 117062
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.454A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.309A>C
  hgvsp: ENST00000440869.2:c.309A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.309A>C
  hgvsp: ENST00000397980.3:c.309A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.141A>C
  hgvsp: ENST00000542769.1:c.141A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.276A>C
  hgvsp: ENST00000305766.6:c.276A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.309A>C
  hgvsp: ENST00000367582.3:c.309A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.276A>C
  hgvsp: ENST00000427704.2:c.276A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.152A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.480A>C
  hgvsp: ENST00000367584.4:c.480A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4702A>C
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1806
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14236
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr103Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

6-144074912-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074912
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074912
    reference: chr 6
allele count: 1
allele frequency: 8.456516591685553e-6
allele num: 118252
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.149T>C
  hgvsp: ENSP00000442153.1:p.Phe50Ser
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.284T>C
  hgvsp: ENSP00000391763.2:p.Phe95Ser
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.317T>C
  hgvsp: ENSP00000381067.3:p.Phe106Ser
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.160T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4710T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.284T>C
  hgvsp: ENSP00000305530.6:p.Phe95Ser
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.317T>C
  hgvsp: ENSP00000417038.2:p.Phe106Ser
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.317T>C
  hgvsp: ENSP00000356554.3:p.Phe106Ser
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.462T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.488T>C
  hgvsp: ENSP00000356556.4:p.Phe163Ser
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 718
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Phe106Ser
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

6-144074912-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074912
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074912
    reference: chr 6
allele count: 3
allele frequency: 2.536954977505666e-5
allele num: 118252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.462T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.284T>G
  hgvsp: ENSP00000391763.2:p.Phe95Cys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.488T>G
  hgvsp: ENSP00000356556.4:p.Phe163Cys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.317T>G
  hgvsp: ENSP00000417038.2:p.Phe106Cys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.149T>G
  hgvsp: ENSP00000442153.1:p.Phe50Cys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.317T>G
  hgvsp: ENSP00000381067.3:p.Phe106Cys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.317T>G
  hgvsp: ENSP00000356554.3:p.Phe106Cys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.160T>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.284T>G
  hgvsp: ENSP00000305530.6:p.Phe95Cys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4710T>G
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14643
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe106Cys
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

6-144074913-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074913
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074913
    reference: chr 6
allele count: 1
allele frequency: 8.452085129401424e-6
allele num: 118314
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.285T>C
  hgvsp: ENST00000427704.2:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.318T>C
  hgvsp: ENST00000367582.3:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.150T>C
  hgvsp: ENST00000542769.1:c.150T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.285T>C
  hgvsp: ENST00000305766.6:c.285T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4711T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.489T>C
  hgvsp: ENST00000367584.4:c.489T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.463T>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.318T>C
  hgvsp: ENST00000440869.2:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.318T>C
  hgvsp: ENST00000397980.3:c.318T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.161T>C
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14706
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe106Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

6-144074923-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074923
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074923
    reference: chr 6
allele count: 1
allele frequency: 8.384900471231407e-6
allele num: 119262
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.473A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.160A>G
  hgvsp: ENSP00000442153.1:p.Asn54Asp
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.328A>G
  hgvsp: ENSP00000356554.3:p.Asn110Asp
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4721A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.328A>G
  hgvsp: ENSP00000381067.3:p.Asn110Asp
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.295A>G
  hgvsp: ENSP00000391763.2:p.Asn99Asp
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.328A>G
  hgvsp: ENSP00000417038.2:p.Asn110Asp
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.499A>G
  hgvsp: ENSP00000356556.4:p.Asn167Asp
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.171A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.295A>G
  hgvsp: ENSP00000305530.6:p.Asn99Asp
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3417
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36857
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15303
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4538
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Asn110Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS

6-144074925-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074925
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074925
    reference: chr 6
allele count: 3
allele frequency: 2.512142019762184e-5
allele num: 119420
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.330C>T
  hgvsp: ENST00000367582.3:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.330C>T
  hgvsp: ENST00000397980.3:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.297C>T
  hgvsp: ENST00000305766.6:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4723C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.162C>T
  hgvsp: ENST00000542769.1:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.297C>T
  hgvsp: ENST00000427704.2:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.330C>T
  hgvsp: ENST00000440869.2:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.475C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.173C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.501C>T
  hgvsp: ENST00000367584.4:c.501C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15439
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Asn110Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD

6-144074928-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074928
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074928
    reference: chr 6
allele count: 1
allele frequency: 8.352962795903706e-6
allele num: 119718
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.300G>A
  hgvsp: ENST00000305766.6:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.176G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.333G>A
  hgvsp: ENST00000397980.3:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.333G>A
  hgvsp: ENST00000367582.3:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.333G>A
  hgvsp: ENST00000440869.2:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4726G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.478G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.300G>A
  hgvsp: ENST00000427704.2:c.300G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.165G>A
  hgvsp: ENST00000542769.1:c.165G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.504G>A
  hgvsp: ENST00000367584.4:c.504G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly111Gly
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-144074930-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074930
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074930
    reference: chr 6
allele count: 1
allele frequency: 8.345573507811457e-6
allele num: 119824
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.302A>G
  hgvsp: ENSP00000391763.2:p.His101Arg
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.335A>G
  hgvsp: ENSP00000356554.3:p.His112Arg
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.480A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.335A>G
  hgvsp: ENSP00000417038.2:p.His112Arg
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.335A>G
  hgvsp: ENSP00000381067.3:p.His112Arg
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.178A>G
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.302A>G
  hgvsp: ENSP00000305530.6:p.His101Arg
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.167A>G
  hgvsp: ENSP00000442153.1:p.His56Arg
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.506A>G
  hgvsp: ENSP00000356556.4:p.His169Arg
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4728A>G
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15805
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 7.75e1
  variant carriers: 0
hgvs: p.His112Arg
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/6-144074932-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074932
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074932
    reference: chr 6
allele count: 1
allele frequency: 8.339031671642289e-6
allele num: 119918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.180A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.482A>C
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.337A>C
  hgvsp: ENSP00000381067.3:p.Met113Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.337A>C
  hgvsp: ENSP00000356554.3:p.Met113Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.508A>C
  hgvsp: ENSP00000356556.4:p.Met170Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.304A>C
  hgvsp: ENSP00000305530.6:p.Met102Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.169A>C
  hgvsp: ENSP00000442153.1:p.Met57Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.337A>C
  hgvsp: ENSP00000417038.2:p.Met113Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.304A>C
  hgvsp: ENSP00000391763.2:p.Met102Leu
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4730A>C
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36782
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15897
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met113Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum

http://identifiers.org/exac.variant/6-144074938-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074938
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074938
    reference: chr 6
allele count: 1
allele frequency: 8.328752519447637e-6
allele num: 120066
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.310C>A
  hgvsp: ENSP00000305530.6:p.Pro104Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.343C>A
  hgvsp: ENSP00000356554.3:p.Pro115Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4736C>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.343C>A
  hgvsp: ENSP00000381067.3:p.Pro115Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.310C>A
  hgvsp: ENSP00000391763.2:p.Pro104Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.186C>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.343C>A
  hgvsp: ENSP00000417038.2:p.Pro115Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.514C>A
  hgvsp: ENSP00000356556.4:p.Pro172Thr
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.488C>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.175C>A
  hgvsp: ENSP00000442153.1:p.Pro59Thr
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16086
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36703
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro115Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

6-144074938-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074938
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074938
    reference: chr 6
allele count: 2
allele frequency: 1.665750503889527e-5
allele num: 120066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.310C>T
  hgvsp: ENSP00000391763.2:p.Pro104Ser
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.186C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.488C>T
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.175C>T
  hgvsp: ENSP00000442153.1:p.Pro59Ser
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.343C>T
  hgvsp: ENSP00000381067.3:p.Pro115Ser
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.514C>T
  hgvsp: ENSP00000356556.4:p.Pro172Ser
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.310C>T
  hgvsp: ENSP00000305530.6:p.Pro104Ser
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.343C>T
  hgvsp: ENSP00000417038.2:p.Pro115Ser
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.343C>T
  hgvsp: ENSP00000356554.3:p.Pro115Ser
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4736C>T
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36703
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro115Ser
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

6-144074944-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074944
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074944
    reference: chr 6
allele count: 2
allele frequency: 1.664253499092982e-5
allele num: 120174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4742G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.181G>A
  hgvsp: ENSP00000442153.1:p.Gly61Arg
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.494G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.349G>A
  hgvsp: ENSP00000356554.3:p.Gly117Arg
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.349G>A
  hgvsp: ENSP00000417038.2:p.Gly117Arg
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.316G>A
  hgvsp: ENSP00000391763.2:p.Gly106Arg
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.520G>A
  hgvsp: ENSP00000356556.4:p.Gly174Arg
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.316G>A
  hgvsp: ENSP00000305530.6:p.Gly106Arg
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.192G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.349G>A
  hgvsp: ENSP00000381067.3:p.Gly117Arg
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3588
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly117Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

6-144074950-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 144074950
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 144074950
    reference: chr 6
allele count: 1
allele frequency: 8.315455104857889e-6
allele num: 120258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356554
  ensembl transcript: ENST00000367582
  gene symbol: PHACTR2
  hgvsc: ENST00000367582.3:c.355G>A
  hgvsp: ENSP00000356554.3:p.Glu119Lys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000402449
  ensembl transcript: ENST00000451827
  gene symbol: PHACTR2
  hgvsc: ENST00000451827.2:c.295+4748G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000402863
  gene symbol: PHACTR2
  hgvsc: ENST00000402863.3:n.500G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000391763
  ensembl transcript: ENST00000427704
  gene symbol: PHACTR2
  hgvsc: ENST00000427704.2:c.322G>A
  hgvsp: ENSP00000391763.2:p.Glu108Lys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000112419
  ensembl transcript: ENST00000420771
  gene symbol: PHACTR2
  hgvsc: ENST00000420771.2:n.198G>A
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000356556
  ensembl transcript: ENST00000367584
  gene symbol: PHACTR2
  hgvsc: ENST00000367584.4:c.526G>A
  hgvsp: ENSP00000356556.4:p.Glu176Lys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000417038
  ensembl transcript: ENST00000440869
  gene symbol: PHACTR2
  hgvsc: ENST00000440869.2:c.355G>A
  hgvsp: ENSP00000417038.2:p.Glu119Lys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000305530
  ensembl transcript: ENST00000305766
  gene symbol: PHACTR2
  hgvsc: ENST00000305766.6:c.322G>A
  hgvsp: ENSP00000305530.6:p.Glu108Lys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000381067
  ensembl transcript: ENST00000397980
  gene symbol: PHACTR2
  hgvsc: ENST00000397980.3:c.355G>A
  hgvsp: ENSP00000381067.3:p.Glu119Lys
  variant of: http://identifiers.org/hgnc/20956
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000112419
  ensembl protein: ENSP00000442153
  ensembl transcript: ENST00000542769
  gene symbol: PHACTR2
  hgvsc: ENST00000542769.1:c.187G>A
  hgvsp: ENSP00000442153.1:p.Glu63Lys
  variant of: http://identifiers.org/hgnc/20956
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16484
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Glu119Lys
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 1984
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3355
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10322
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1362
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24649
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8383
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1387
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512630464377553e-5
allele num: 66110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9692
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15178
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.349e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.98e-1

QD
type: SiteQuality
SIO_000300: 1.227e1

MQRankSum
type: SiteQuality
SIO_000300: -3.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.165e0

MQ
type: SiteQuality
SIO_000300: 5.864e1

DP
type: SiteQuality
SIO_000300: 2.167256e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.356999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -9.159e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1439
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10310
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1984
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3354
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8382
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3379
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66050
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15166
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.695652173913044e-5
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9686
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.24e-1

QD
type: SiteQuality
SIO_000300: 1.408e1

DP
type: SiteQuality
SIO_000300: 2.166687e6

MQRankSum
type: SiteQuality
SIO_000300: -3.6e-1

FS
type: SiteQuality
SIO_000300: 4.589e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.934e1

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1456
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4769
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10312
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24702
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3377
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3353
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1984
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.032844453625284e-4
allele num: 9682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15164
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.254e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.166383e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.347e1

FS
type: SiteQuality
SIO_000300: 5.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.66e-1

GenotypeQuality
all individuals: 10301
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3378
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4766
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3348
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8379
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24654
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.029752166272799e-5
allele num: 66012
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.02e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.75e0

VQSLOD
type: SiteQuality
SIO_000300: -5.782e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

FS
type: SiteQuality
SIO_000300: 9.775e0

DP
type: SiteQuality
SIO_000300: 2.164852e6

MQ
type: SiteQuality
SIO_000300: 5.986e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

GenotypeQuality
all individuals: 94
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10305
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24537
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1983
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3374
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3347
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4769
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8379
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515197430225158e-5
allele num: 65998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.593e0

VQSLOD
type: SiteQuality
SIO_000300: -6.476e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.82e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.163764e6

MQRankSum
type: SiteQuality
SIO_000300: 1.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24187
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8378
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4756
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10259
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3364
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65844
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.036699149906697e-4
allele num: 9646
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.333e0

DP
type: SiteQuality
SIO_000300: 2.158183e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.05e-1

MQ
type: SiteQuality
SIO_000300: 5.554e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

FS
type: SiteQuality
SIO_000300: 1.051e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.361e0

QD
type: SiteQuality
SIO_000300: 1.083e1

VQSLOD
type: SiteQuality
SIO_000300: 7.23e-1

GenotypeQuality
all individuals: 4748
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23491
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3345
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8379
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 10228
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 22
allele frequency: 2.588844433984467e-3
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.20074890784273e-4
allele num: 9614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

DP
type: SiteQuality
SIO_000300: 2.14897e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.456e1

MQRankSum
type: SiteQuality
SIO_000300: 1.12e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.52e-1

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4745
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3339
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1982
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1385
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10162
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22778
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527790509365356e-5
allele num: 65454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.139044e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.31e0

QD
type: SiteQuality
SIO_000300: 1.338e1

MQRankSum
type: SiteQuality
SIO_000300: -1.195e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.286e0

FS
type: SiteQuality
SIO_000300: 4.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.5e0

GenotypeQuality
all individuals: 315
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3338
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22319
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8357
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 196
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3335
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3418
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4741
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1981
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10124
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.187545573866122e-4
allele num: 13714
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.05e-1

QD
type: SiteQuality
SIO_000300: 1.123e1

MQRankSum
type: SiteQuality
SIO_000300: 8.99e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.55e-1

DP
type: SiteQuality
SIO_000300: 2.13021e6

GenotypeQuality
all individuals: 379
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8352
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21114
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3324
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3336
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10054
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.194377894904967e-4
allele num: 12522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64622
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.559563360227812e-4
allele num: 8428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 5.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.545e0

DP
type: SiteQuality
SIO_000300: 2.108222e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

QD
type: SiteQuality
SIO_000300: 2.361e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
all individuals: 3305
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8338
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 82
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4484
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1086
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9993
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20478
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567005139776858e-5
allele num: 63816
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.115e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.26e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.18e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.883e1

FS
type: SiteQuality
SIO_000300: 1.048e0

MQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

DP
type: SiteQuality
SIO_000300: 2.088062e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.53e-1

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4540
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3304
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3330
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8342
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1378
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4716
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9992
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.702194357366771e-5
allele num: 63800
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.009009009009009e-5
allele num: 11100
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

QD
type: SiteQuality
SIO_000300: 1.315e1

FS
type: SiteQuality
SIO_000300: 1.408e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.086995e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

GenotypeQuality
all individuals: 1378
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9992
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4540
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8342
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 3330
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4716
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.601024109238319e-4
allele num: 9374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63800
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.315e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.53e-1

FS
type: SiteQuality
SIO_000300: 1.408e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.47e0

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

DP
type: SiteQuality
SIO_000300: 2.086995e6

GenotypeQuality
all individuals: 172
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9981
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8324
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3319
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20350
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4424
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.40910801656003e-5
allele num: 10628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.74e0

VQSLOD
type: SiteQuality
SIO_000300: -2.945e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.079303e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.74e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.212e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.96e-1

GenotypeQuality
all individuals: 1008
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6079
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8296
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2388
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1930
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2999
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2455
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12218
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3780
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1216
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2409
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.613579888340272e-5
allele num: 61974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

VQSLOD
type: SiteQuality
SIO_000300: -3.1e0

QD
type: SiteQuality
SIO_000300: 2.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

MQ
type: SiteQuality
SIO_000300: 5.895e1

DP
type: SiteQuality
SIO_000300: 1.898939e6

GenotypeQuality
all individuals: 4271
bin: 6.75e1
variant carriers: 100

GenotypeQuality
all individuals: 2246
bin: 8.25e1
variant carriers: 198

GenotypeQuality
all individuals: 2724
bin: 7.75e1
variant carriers: 158

GenotypeQuality
all individuals: 800
bin: 1.75e1
variant carriers: 83

GenotypeQuality
all individuals: 896
bin: 1.25e1
variant carriers: 49

GenotypeQuality
all individuals: 1543
bin: 4.25e1
variant carriers: 36

GenotypeQuality
all individuals: 1106
bin: 2.75e1
variant carriers: 82

GenotypeQuality
all individuals: 8037
bin: 6.25e1
variant carriers: 123

GenotypeQuality
all individuals: 2751
bin: 7.5e0
variant carriers: 68

GenotypeQuality
all individuals: 1008
bin: 8.75e1
variant carriers: 122

GenotypeQuality
all individuals: 1457
bin: 9.25e1
variant carriers: 157

GenotypeQuality
all individuals: 1116
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 728
bin: 5.75e1
variant carriers: 114

GenotypeQuality
all individuals: 1322
bin: 5.25e1
variant carriers: 105

GenotypeQuality
all individuals: 2124
bin: 2.25e1
variant carriers: 94

GenotypeQuality
all individuals: 1724
bin: 7.25e1
variant carriers: 73

Latino
type: Population
allele count: 3332
allele frequency: 2.985663082437276e-1
allele num: 11160
num of homozygotes: 515

European (Finnish)
type: Population
allele count: 1226
allele frequency: 1.872327428222358e-1
allele num: 6548
num of homozygotes: 122

South Asian
type: Population
allele count: 1310
allele frequency: 1.453940066592675e-1
allele num: 9010
num of homozygotes: 113

African
type: Population
allele count: 591
allele frequency: 6.513114392770553e-2
allele num: 9074
num of homozygotes: 18

Other
type: Population
allele count: 123
allele frequency: 1.62269129287599e-1
allele num: 758
num of homozygotes: 8

European (Non-Finnish)
type: Population
allele count: 6158
allele frequency: 9.992535618083277e-2
allele num: 61626
num of homozygotes: 304

East Asian
type: Population
allele count: 2538
allele frequency: 3.197278911564626e-1
allele num: 7938
num of homozygotes: 430

VQSLOD
type: SiteQuality
SIO_000300: 5.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.867416e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.871e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.89e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.634e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e-1

GenotypeQuality
all individuals: 203
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1365
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1204
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11062
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12147
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7503
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1055
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6414
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5332
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.086484137331595e-4
allele num: 9204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5868
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12346
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

DP
type: SiteQuality
SIO_000300: 1.202965e6

MQ
type: SiteQuality
SIO_000300: 5.911e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.81e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

QD
type: SiteQuality
SIO_000300: 1.108e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.08e-1

GenotypeQuality
all individuals: 6272
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11805
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2501
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1691
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12394
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4428
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7474
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9214
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7332
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 720
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49174
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.120838070488874e-5
allele num: 12314
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.79e-1

QD
type: SiteQuality
SIO_000300: 1.039e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

DP
type: SiteQuality
SIO_000300: 1.208661e6

GenotypeQuality
all individuals: 1136
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4345
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4043
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18565
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5916
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.994017946161515e-5
allele num: 50150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5492
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

FS
type: SiteQuality
SIO_000300: 7.26e0

VQSLOD
type: SiteQuality
SIO_000300: -1.458e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.272809e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e0

QD
type: SiteQuality
SIO_000300: 8.19e0

MQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.898e0

GenotypeQuality
all individuals: 1931
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1093
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3601
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5680
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 972
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3785
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21385
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50690
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.046901172529313e-4
allele num: 9552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5954
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12600
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.62e0

VQSLOD
type: SiteQuality
SIO_000300: 2.39e0

QD
type: SiteQuality
SIO_000300: 8.83e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

DP
type: SiteQuality
SIO_000300: 1.300898e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.96e-1

GenotypeQuality
all individuals: 482
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1661
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11217
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31074
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 389
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10254
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.9e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 8.289999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.414196e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.307e0

GenotypeQuality
all individuals: 31965
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2358
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2327
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1556
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3760
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54134
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13164
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.712509712509713e-5
allele num: 10296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6292
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.422502e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.85e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.316e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.07e-1

GenotypeQuality
all individuals: 445
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2229
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32499
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3760
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10753
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2361
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2725
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 458
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54416
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.543e1

MQRankSum
type: SiteQuality
SIO_000300: -5.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.99e-1

DP
type: SiteQuality
SIO_000300: 1.431773e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.53e-1

GenotypeDepth
all individuals: 138
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 586
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7463
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 688
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39380
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3761
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 540
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7272
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.177578897786152e-4
allele num: 8492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58196
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10964
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.527868e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.0e0

FS
type: SiteQuality
SIO_000300: 1.906e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.96e0

QD
type: SiteQuality
SIO_000300: 1.21e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 502
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2749
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41527
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6476
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3760
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 381
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59242
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11088
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.933851060879212e-5
allele num: 14422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7566
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 1.55289e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -9.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.368e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.11e-1

FS
type: SiteQuality
SIO_000300: 1.547e0

QD
type: SiteQuality
SIO_000300: 1.299e1

GenotypeQuality
all individuals: 95
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4757
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44608
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6464
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8000
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.106684373616645e-4
allele num: 9036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61138
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.916e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 1.347e1

VQSLOD
type: SiteQuality
SIO_000300: -5.087e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.506e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 1.592645e6

GenotypeQuality
all individuals: 710
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 644
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45188
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4242
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.24380433372259e-5
allele num: 61656
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQ
type: SiteQuality
SIO_000300: 5.948e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.615e0

DP
type: SiteQuality
SIO_000300: 1.60443e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.92e-1

FS
type: SiteQuality
SIO_000300: 1.883e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.066e1

GenotypeQuality
all individuals: 4075
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3018
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45459
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8136
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9184
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.81057268722467e-5
allele num: 11350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15266
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e-1

FS
type: SiteQuality
SIO_000300: 2.524e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.608906e6

MQRankSum
type: SiteQuality
SIO_000300: -1.272e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

QD
type: SiteQuality
SIO_000300: 1.311e1

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3053
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45468
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.083423618634886e-4
allele num: 9230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62148
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

MQ
type: SiteQuality
SIO_000300: 5.849e1

QD
type: SiteQuality
SIO_000300: 9.66e0

DP
type: SiteQuality
SIO_000300: 1.615727e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.62e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.059e-1

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45916
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3643
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.475845097785262e-5
allele num: 15442
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62452
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.62124e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.109e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.874e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.844e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.644e0

QD
type: SiteQuality
SIO_000300: 7.53e0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46028
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 729
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8246
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.533272002453235e-4
allele num: 6522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15468
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.622847e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.957e0

MQRankSum
type: SiteQuality
SIO_000300: 2.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

QD
type: SiteQuality
SIO_000300: 1.258e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

GenotypeQuality
all individuals: 3691
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45792
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15494
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.074344649763644e-4
allele num: 9308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.597954618088846e-5
allele num: 62580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.917e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

QD
type: SiteQuality
SIO_000300: 1.202e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.4e-2

FS
type: SiteQuality
SIO_000300: 5.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e-1

DP
type: SiteQuality
SIO_000300: 1.623763e6

GenotypeQuality
all individuals: 352
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3065
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44582
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.225490196078431e-4
allele num: 8160
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.338e0

VQSLOD
type: SiteQuality
SIO_000300: -2.729e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.975e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.69e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQRankSum
type: SiteQuality
SIO_000300: 3.26e-1

QD
type: SiteQuality
SIO_000300: 1.385e1

DP
type: SiteQuality
SIO_000300: 1.609488e6

GenotypeQuality
all individuals: 247
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2566
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 898
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.694111269228163e-5
allele num: 59028
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.97e-1

FS
type: SiteQuality
SIO_000300: 1.904e0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.299e0

DP
type: SiteQuality
SIO_000300: 1.514024e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

QD
type: SiteQuality
SIO_000300: 5.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.199e0

GenotypeQuality
all individuals: 180
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13225
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1374
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2499
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1093
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34300
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.719040088014852e-5
allele num: 58172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14152
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.954e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.484532e6

VQSLOD
type: SiteQuality
SIO_000300: -2.062e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.493e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 9.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 351
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 957
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3776
bin: 9.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1865
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26419
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8214
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6182
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.074638530676045e-3
allele num: 10236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13716
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.251385462476313e-4
allele num: 55938
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.45e-1

QD
type: SiteQuality
SIO_000300: 1.482e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.390147e6

GenotypeQuality
all individuals: 219
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3764
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1166
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2209
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2623
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24487
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19547
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.871668311944718e-5
allele num: 10130
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6700
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.677011325194882e-4
allele num: 13598
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6142
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.612455747417094e-5
allele num: 55364
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.23e-1

DP
type: SiteQuality
SIO_000300: 1.369735e6

QD
type: SiteQuality
SIO_000300: 1.051e1

VQSLOD
type: SiteQuality
SIO_000300: 7.15e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-3

FS
type: SiteQuality
SIO_000300: 3.947e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 221
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2196
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20425
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22715
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 353
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.814882032667877e-5
allele num: 55100
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13586
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.89e0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

MQ
type: SiteQuality
SIO_000300: 5.061e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.225e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

QD
type: SiteQuality
SIO_000300: 8.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.349795e6

GenotypeQuality
all individuals: 9237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24417
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4194
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 357
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.970288056113804e-5
allele num: 50754
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.031e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.46e-1

MQ
type: SiteQuality
SIO_000300: 5.861e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

QD
type: SiteQuality
SIO_000300: 1.682e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

DP
type: SiteQuality
SIO_000300: 1.186308e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

GenotypeQuality
all individuals: 283
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5254
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5488
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1485
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9237
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.970288056113804e-5
allele num: 50754
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12636
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5924
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.682e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.46e-1

DP
type: SiteQuality
SIO_000300: 1.186308e6

MQ
type: SiteQuality
SIO_000300: 5.861e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

VQSLOD
type: SiteQuality
SIO_000300: -1.031e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e0

GenotypeQuality
all individuals: 1952
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4652
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24075
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 943
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 8157
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7390
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50018
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 9.221689413500553e-4
allele num: 5422
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

DP
type: SiteQuality
SIO_000300: 1.174293e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.599999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.657e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.039999999999999e0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2708
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5983
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6523
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6673
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1741
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 392
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21333
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5660
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.338087444470423e-4
allele num: 8554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6918
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46594
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.83e0

VQSLOD
type: SiteQuality
SIO_000300: -8.359999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.134703e6

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.046e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.28e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.203e0

GenotypeQuality
all individuals: 6765
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6004
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19066
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3758
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3231
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7630
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3205
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.239771881973717e-4
allele num: 8066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5558
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.994908655286014e-4
allele num: 6678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4364
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44764
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.176e1

MQRankSum
type: SiteQuality
SIO_000300: 3.96e-1

FS
type: SiteQuality
SIO_000300: 2.069e0

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

MQ
type: SiteQuality
SIO_000300: 6.027e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.21e-1

DP
type: SiteQuality
SIO_000300: 1.125371e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 334
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4157
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1620
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5165
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7653
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 854
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 440
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1152
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3316
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10827
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35642
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.784439685938615e-4
allele num: 5604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.312e0

VQSLOD
type: SiteQuality
SIO_000300: -2.6e0

MQ
type: SiteQuality
SIO_000300: 5.82e1

DP
type: SiteQuality
SIO_000300: 1.130328e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.01e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

QD
type: SiteQuality
SIO_000300: 4.93e0

GenotypeQuality
all individuals: 150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18645
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2623
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4896
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5563
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4837
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 724
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.654807214959457e-5
allele num: 60430
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10084
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.31e-1

QD
type: SiteQuality
SIO_000300: 1.887e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

DP
type: SiteQuality
SIO_000300: 1.191748e6

VQSLOD
type: SiteQuality
SIO_000300: 8.54e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 4562
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2779
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3281
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4751
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5889
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 463
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2181
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 939
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10138
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.651855033202286e-5
allele num: 60538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9264
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.257e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.936e1

VQSLOD
type: SiteQuality
SIO_000300: -9.53e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.418e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.331e0

DP
type: SiteQuality
SIO_000300: 1.23662e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
all individuals: 2320
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1417
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4036
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6013
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31301
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3528
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.290014805066623e-5
allele num: 60790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10916
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7982
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.667e0

DP
type: SiteQuality
SIO_000300: 1.275994e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

FS
type: SiteQuality
SIO_000300: 5.352e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.2e-2

QD
type: SiteQuality
SIO_000300: 1.075e1

MQRankSum
type: SiteQuality
SIO_000300: 6.67e-1

GenotypeQuality
all individuals: 468
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2202
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2985
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1122
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3742
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33626
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10962
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.071811361200429e-4
allele num: 9330
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61090
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

MQ
type: SiteQuality
SIO_000300: 5.849e1

QD
type: SiteQuality
SIO_000300: 1.742e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.2e-1

DP
type: SiteQuality
SIO_000300: 1.291235e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.04e0

GenotypeQuality
all individuals: 686
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3699
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1810
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 799
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2735
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1783
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5698
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37113
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9386
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.619695497246518e-5
allele num: 61740
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.288e0

VQSLOD
type: SiteQuality
SIO_000300: 2.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.43e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.339055e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.776e0

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1610
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 515
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39340
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2004
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 533
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 658
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3814
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.060670343657191e-4
allele num: 9428
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62110
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11106
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.1e-1

FS
type: SiteQuality
SIO_000300: 1.715e0

DP
type: SiteQuality
SIO_000300: 1.35717e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.797e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 6.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
SIO_000300: 1.165e1

GenotypeQuality
all individuals: 407
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5414
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 106
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39662
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3843
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2220
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1324
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.214400514304082e-5
allele num: 62220
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.060445387062566e-4
allele num: 9430
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11140
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 4.486719310839914e-4
allele num: 11144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-2

DP
type: SiteQuality
SIO_000300: 1.361046e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.96e-1

FS
type: SiteQuality
SIO_000300: 6.25e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

QD
type: SiteQuality
SIO_000300: 1.148e1

GenotypeQuality
all individuals: 2034
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3877
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5241
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1186
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40273
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8208
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11160
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.057753331922996e-4
allele num: 9454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62422
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.936e0

DP
type: SiteQuality
SIO_000300: 1.370621e6

ClippingRankSum
type: SiteQuality
SIO_000300: -9.68e-1

QD
type: SiteQuality
SIO_000300: 1.099e1

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.389999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.996e0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 675
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41246
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62760
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.053740779768177e-4
allele num: 9490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 3.864e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 1.386153e6

QD
type: SiteQuality
SIO_000300: 1.28e1

GenotypeQuality
all individuals: 2010
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41246
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3909
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 328
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.675704602211916e-4
allele num: 11212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.780114722753346e-5
allele num: 62760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.386153e6

FS
type: SiteQuality
SIO_000300: 3.864e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

MQ
type: SiteQuality
SIO_000300: 5.978e1

QD
type: SiteQuality
SIO_000300: 1.28e1

GenotypeQuality
all individuals: 70
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42802
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1371
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 1042
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.196458482890644e-4
allele num: 8358
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9554
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11280
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.632386549134835e-4
allele num: 12252
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.201923076923077e-3
allele num: 832
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63400
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.411273e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.836e-1

FS
type: SiteQuality
SIO_000300: 3.955e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

QD
type: SiteQuality
SIO_000300: 1.922e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.53e-1

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2323
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46797
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 485
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4314
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538130248869474e-5
allele num: 65014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14262
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.550000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 9.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.09e0

VQSLOD
type: SiteQuality
SIO_000300: -1.342e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.467294e6

GenotypeQuality
all individuals: 47433
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4367
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 207
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532332209623046e-5
allele num: 65260
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.029442042413012e-4
allele num: 9714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.47e-2

DP
type: SiteQuality
SIO_000300: 1.475276e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.67e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

QD
type: SiteQuality
SIO_000300: 1.461e1

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48266
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 196
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 757
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522255373561469e-5
allele num: 65692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15300
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

QD
type: SiteQuality
SIO_000300: 1.179e1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

DP
type: SiteQuality
SIO_000300: 1.490747e6

FS
type: SiteQuality
SIO_000300: 1.656e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

GenotypeQuality
all individuals: 757
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 196
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48266
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.535947712418301e-5
allele num: 15300
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.340276152586005e-4
allele num: 8546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9752
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.656e0

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.69e0

QD
type: SiteQuality
SIO_000300: 1.179e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

DP
type: SiteQuality
SIO_000300: 1.490747e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

GenotypeQuality
all individuals: 4456
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 759
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1361
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2005
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 292
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 716
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 224
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48224
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025430680885972e-4
allele num: 9752
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.097e1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

FS
type: SiteQuality
SIO_000300: 2.471e0

VQSLOD
type: SiteQuality
SIO_000300: 6.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.492101e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.49e-1

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48982
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168497312456181e-4
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.23e0

DP
type: SiteQuality
SIO_000300: 1.506336e6

QD
type: SiteQuality
SIO_000300: 1.507e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.31e0

MQ
type: SiteQuality
SIO_000300: 5.905e1

FS
type: SiteQuality
SIO_000300: 4.395e0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4525
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.024803387779794e-5
allele num: 66120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.168224299065421e-4
allele num: 8560
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.510595e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.61e-1

QD
type: SiteQuality
SIO_000300: 2.273e1

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49474
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4595
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.689607229753215e-5
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

FS
type: SiteQuality
SIO_000300: 4.719e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.514706e6

QD
type: SiteQuality
SIO_000300: 1.302e1

VQSLOD
type: SiteQuality
SIO_000300: 7.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.512e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 764
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4639
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49703
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.167133520074697e-4
allele num: 8568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66272
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.516178e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.330000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.647e0

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4641
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2008
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 765
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.156119182467373e-5
allele num: 16244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -8.085e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.84e-1

DP
type: SiteQuality
SIO_000300: 1.517891e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.717e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

QD
type: SiteQuality
SIO_000300: 7.6e0

MQRankSum
type: SiteQuality
SIO_000300: -1.133e0

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49807
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4644
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.131207847946045e-5
allele num: 16310
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.147e0

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

FS
type: SiteQuality
SIO_000300: 7.14e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

DP
type: SiteQuality
SIO_000300: 1.521193e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.875e1

VQSLOD
type: SiteQuality
SIO_000300: 3.62e-1

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 131
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4644
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49807
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.044989775051125e-4
allele num: 9780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66374
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

DP
type: SiteQuality
SIO_000300: 1.521193e6

FS
type: SiteQuality
SIO_000300: 7.14e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.147e0

VQSLOD
type: SiteQuality
SIO_000300: 3.62e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.58e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.6e-2

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 761
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4663
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2010
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 201
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50036
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505706628120577e-5
allele num: 66414
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.108735491753207e-5
allele num: 16370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.694e0

FS
type: SiteQuality
SIO_000300: 3.474e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.03e0

DP
type: SiteQuality
SIO_000300: 1.524946e6

QD
type: SiteQuality
SIO_000300: 2.892e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.28e-1