5-122181329-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181329
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181329
    reference: chr 5
allele count: 2
allele frequency: 4.088140304975267e-5
allele num: 48922
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.1A>G
  hgvsp: ENSP00000378837.4:p.Met1?
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.1A>G
  hgvsp: ENSP00000424149.1:p.Met1?
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1099A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.1A>G
  hgvsp: ENSP00000261369.4:p.Met1?
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.1A>G
  hgvsp: ENSP00000422535.1:p.Met1?
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2019A>G
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5845
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17960
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29025
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3730
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 6.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17906
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5646
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: A
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-122181333-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181333
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181333
    reference: chr 5
allele count: 1
allele frequency: 1.906723105670595e-5
allele num: 52446
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.5A>C
  hgvsp: ENSP00000422535.1:p.Glu2Ala
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2023A>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.5A>C
  hgvsp: ENSP00000261369.4:p.Glu2Ala
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.5A>C
  hgvsp: ENSP00000378837.4:p.Glu2Ala
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1103A>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.5A>C
  hgvsp: ENSP00000424149.1:p.Glu2Ala
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5339
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19773
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27822
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3618
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1794
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28395
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19913
  bin: 6.25e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1090
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 265
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genotype quality: GenotypeQuality
  all individuals: 210
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Glu2Ala
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

5-122181343-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181343
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181343
    reference: chr 5
allele count: 1
allele frequency: 1.741614127973806e-5
allele num: 57418
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.15C>T
  hgvsp: ENST00000261369.4:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.15C>T
  hgvsp: ENST00000506996.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.15C>T
  hgvsp: ENST00000395451.4:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1113C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2033C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.15C>T
  hgvsp: ENST00000513881.1:c.15C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1178
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4270
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
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genotype quality: GenotypeQuality
  all individuals: 809
  bin: 1.75e1
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genotype quality: GenotypeQuality
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  bin: 2.5e0
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 34
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile5Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

5-122181345-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181345
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181345
    reference: chr 5
allele count: 1
allele frequency: 1.716738197424893e-5
allele num: 58250
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.17C>G
  hgvsp: ENSP00000261369.4:p.Pro6Arg
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.17C>G
  hgvsp: ENSP00000378837.4:p.Pro6Arg
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.17C>G
  hgvsp: ENSP00000422535.1:p.Pro6Arg
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.17C>G
  hgvsp: ENSP00000424149.1:p.Pro6Arg
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1115C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2035C>G
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4482
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25668
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genotype depth: GenotypeDepth
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  bin: 3.75e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 4.75e1
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genotype depth: GenotypeDepth
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  bin: 5.75e1
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genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 744
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro6Arg
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

5-122181346-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181346
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181346
    reference: chr 5
allele count: 2
allele frequency: 3.396508389375722e-5
allele num: 58884
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.18G>A
  hgvsp: ENST00000506996.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.18G>A
  hgvsp: ENST00000513881.1:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1116G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.18G>A
  hgvsp: ENST00000261369.4:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2036G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.18G>A
  hgvsp: ENST00000395451.4:c.18G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25431
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20943
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4588
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 690
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20923
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Pro6Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-122181347-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181347
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181347
    reference: chr 5
allele count: 1
allele frequency: 1.683388324018585e-5
allele num: 59404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.19T>G
  hgvsp: ENSP00000422535.1:p.Ser7Ala
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.19T>G
  hgvsp: ENSP00000261369.4:p.Ser7Ala
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1117T>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2037T>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.19T>G
  hgvsp: ENSP00000424149.1:p.Ser7Ala
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.19T>G
  hgvsp: ENSP00000378837.4:p.Ser7Ala
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4610
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26930
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4568
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser7Ala
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

5-122181348-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181348
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181348
    reference: chr 5
allele count: 2
allele frequency: 3.350757271143279e-5
allele num: 59688
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1118C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.20C>T
  hgvsp: ENSP00000424149.1:p.Ser7Phe
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.20C>T
  hgvsp: ENSP00000422535.1:p.Ser7Phe
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.20C>T
  hgvsp: ENSP00000261369.4:p.Ser7Phe
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.20C>T
  hgvsp: ENSP00000378837.4:p.Ser7Phe
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2038C>T
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26934
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21060
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 830
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser7Phe
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

5-122181354-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181354
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181354
    reference: chr 5
allele count: 1
allele frequency: 1.651309488424321e-5
allele num: 60558
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.26G>A
  hgvsp: ENSP00000261369.4:p.Arg9His
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.26G>A
  hgvsp: ENSP00000424149.1:p.Arg9His
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.26G>A
  hgvsp: ENSP00000422535.1:p.Arg9His
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.26G>A
  hgvsp: ENSP00000378837.4:p.Arg9His
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1124G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2044G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20023
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1495
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1112
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19867
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4768
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg9His
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

5-122181364-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181364
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181364
    reference: chr 5
allele count: 1
allele frequency: 1.652346331791144e-5
allele num: 60520
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.36G>C
  hgvsp: ENSP00000261369.4:p.Glu12Asp
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1134G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2054G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.7G>C
  hgvsp: ENSP00000422184.1:p.Glu3Asp
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.36G>C
  hgvsp: ENSP00000378837.4:p.Glu12Asp
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.36G>C
  hgvsp: ENSP00000424149.1:p.Glu12Asp
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.36G>C
  hgvsp: ENSP00000422535.1:p.Glu12Asp
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1768
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5597
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1298
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu12Asp
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

5-122181366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181366
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181366
    reference: chr 5
allele count: 2
allele frequency: 3.299350028044475e-5
allele num: 60618
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.9G>A
  hgvsp: ENSP00000422184.1:p.Ser4Asn
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.38G>A
  hgvsp: ENSP00000378837.4:p.Ser13Asn
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2056G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1136G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.38G>A
  hgvsp: ENSP00000261369.4:p.Ser13Asn
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.38G>A
  hgvsp: ENSP00000422535.1:p.Ser13Asn
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.38G>A
  hgvsp: ENSP00000424149.1:p.Ser13Asn
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3149
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16627
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16582
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser13Asn
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/5-122181371-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181371
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181371
    reference: chr 5
allele count: 1
allele frequency: 1.645927974191849e-5
allele num: 60756
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2061C>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.43C>A
  hgvsp: ENSP00000261369.4:p.Leu15Met
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.43C>A
  hgvsp: ENSP00000424149.1:p.Leu15Met
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.14C>A
  hgvsp: ENSP00000422184.1:p.Leu6Met
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1141C>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.43C>A
  hgvsp: ENSP00000422535.1:p.Leu15Met
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.43C>A
  hgvsp: ENSP00000378837.4:p.Leu15Met
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15836
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2045
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu15Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

5-122181374-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181374
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181374
    reference: chr 5
allele count: 1
allele frequency: 1.656506758547575e-5
allele num: 60368
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.46G>A
  hgvsp: ENSP00000422535.1:p.Glu16Lys
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.17G>A
  hgvsp: ENSP00000422184.1:p.Glu7Lys
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.46G>A
  hgvsp: ENSP00000378837.4:p.Glu16Lys
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1144G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.46G>A
  hgvsp: ENSP00000261369.4:p.Glu16Lys
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.46G>A
  hgvsp: ENSP00000424149.1:p.Glu16Lys
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2064G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10151
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu16Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP

5-122181374-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181374
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181374
    reference: chr 5
allele count: 1
allele frequency: 1.656506758547575e-5
allele num: 60368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1144G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.46G>C
  hgvsp: ENSP00000422535.1:p.Glu16Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2064G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.46G>C
  hgvsp: ENSP00000424149.1:p.Glu16Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.46G>C
  hgvsp: ENSP00000261369.4:p.Glu16Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.17G>C
  hgvsp: ENSP00000422184.1:p.Glu7Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.46G>C
  hgvsp: ENSP00000378837.4:p.Glu16Gln
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10151
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23107
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5907
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2042
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 816
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 611
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Glu16Gln
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

5-122181378-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181378
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181378
    reference: chr 5
allele count: 2
allele frequency: 3.359989248034406e-5
allele num: 59524
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.50G>T
  hgvsp: ENSP00000424149.1:p.Arg17Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1148G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.50G>T
  hgvsp: ENSP00000378837.4:p.Arg17Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.50G>T
  hgvsp: ENSP00000422535.1:p.Arg17Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2068G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.50G>T
  hgvsp: ENSP00000261369.4:p.Arg17Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.21G>T
  hgvsp: ENSP00000422184.1:p.Arg8Leu
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22706
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11493
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12740
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28857
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7060
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg17Leu
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD

5-122181394-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181394
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181394
    reference: chr 5
allele count: 1
allele frequency: 1.92130341223486e-5
allele num: 52048
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+6C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+6C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1164C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2084C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.31+6C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+6C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+6C>T
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15325
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20242
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9916
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3202
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24272
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3383
  bin: 1.75e1
  variant carriers: 0
hgvs: c.60+6C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

5-122181399-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181399
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181399
    reference: chr 5
allele count: 1
allele frequency: 1.929384526336099e-5
allele num: 51830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.31+11G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2089G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+11G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+11G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1169G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+11G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+11G>T
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1525
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10459
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3747
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1446
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

5-122181405-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181405
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181405
    reference: chr 5
allele count: 3
allele frequency: 6.016123210203345e-5
allele num: 49866
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2095G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.31+17G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+17G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1175G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+17G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+17G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+17G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3722
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11231
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4895
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15339
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11960
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25254
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 3433
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 1790
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

5-122181408-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181408
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181408
    reference: chr 5
allele count: 4
allele frequency: 8.125126955108673e-5
allele num: 49230
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+20G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+20G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+20G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1178G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.31+20G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2098G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+20G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4718
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3643
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20159
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11372
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15365
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3482
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1787
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 364
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

5-122181409-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181409
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181409
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 49102
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2099G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1179G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+21G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+21G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+21G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+21G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.31+21G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20103
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3655
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4907
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1863
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12185
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3468
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25211
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

5-122181410-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181410
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181410
    reference: chr 5
allele count: 1
allele frequency: 2.068765774339029e-5
allele num: 48338
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.31+22A>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+22A>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+22A>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+22A>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+22A>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2100A>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1180A>T
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15411
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11487
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4158
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2069
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11987
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4282
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

5-122181416-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181416
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181416
    reference: chr 5
allele count: 1
allele frequency: 2.152574479076976e-5
allele num: 46456
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+28C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2106C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.31+28C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+28C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1186C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+28C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+28C>G
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15461
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12663
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22731
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3719
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/5-122181416-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181416
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181416
    reference: chr 5
allele count: 1
allele frequency: 2.152574479076976e-5
allele num: 46456
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+28C>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+28C>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+28C>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2106C>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1186C>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+28C>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.31+28C>A
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15461
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1836
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

5-122181416-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181416
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181416
    reference: chr 5
allele count: 7
allele frequency: 1.506802135353883e-4
allele num: 46456
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1186C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+28C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+28C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2106C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.31+28C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+28C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+28C>T
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2975
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15461
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 19599
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3869
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2516
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12663
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22731
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

5-122181421-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181421
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181421
    reference: chr 5
allele count: 8
allele frequency: 1.89582444665624e-4
allele num: 42198
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+33C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+33C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1191C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.31+33C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2111C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+33C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+33C>G
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19608
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 15249
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12736
  bin: 2.5e0
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genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 925
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2447
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4441
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3536
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3851
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3749
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3229
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 521
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12326
  bin: 7.5e0
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

5-122181425-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181425
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181425
    reference: chr 5
allele count: 2
allele frequency: 4.425366199052971e-5
allele num: 45194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+37C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+37C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.31+37C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+37C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+37C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1195C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2115C>G
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13593
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20109
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15189
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
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genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.25e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 431
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3238
  bin: 1.25e1
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genotype quality: GenotypeQuality
  all individuals: 74
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genotype quality: GenotypeQuality
  all individuals: 9
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genotype quality: GenotypeQuality
  all individuals: 4248
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 131
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genotype quality: GenotypeQuality
  all individuals: 2210
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genotype quality: GenotypeQuality
  all individuals: 14050
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

5-122181428-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181428
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181428
    reference: chr 5
allele count: 1
allele frequency: 2.246383322850211e-5
allele num: 44516
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.31+40G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+40G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2118G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+40G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+40G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1198G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+40G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13697
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
  all individuals: 1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 27
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 599
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genotype quality: GenotypeQuality
  all individuals: 20836
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

5-122181436-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122181436
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122181436
    reference: chr 5
allele count: 1
allele frequency: 2.470966147763776e-5
allele num: 40470
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+1206G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+48G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+2126G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+48G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+48G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.31+48G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+48G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1998
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22433
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3720
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4740
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP

5-122189336-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122189336
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122189336
    reference: chr 5
allele count: 1
allele frequency: 1.138174368313226e-4
allele num: 8786
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+9106A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+7948A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+7948A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.32-33A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+10026A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+7948A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+7948A>G
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 908
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

5-122189348-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122189348
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122189348
    reference: chr 5
allele count: 6
allele frequency: 6.528835690968443e-4
allele num: 9190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+7960T>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.32-21T>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+9118T>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+10038T>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+7960T>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+7960T>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+7960T>A
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3038
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

5-122189359-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122189359
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122189359
    reference: chr 5
allele count: 4
allele frequency: 4.122011541632317e-4
allele num: 9704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+7971T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+10049T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.32-10T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+9129T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+7971T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+7971T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+7971T>C
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3557
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 8.25e1
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genotype quality: GenotypeQuality
  all individuals: 72
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genotype quality: GenotypeQuality
  all individuals: 6
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genotype quality: GenotypeQuality
  all individuals: 3909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-122189363-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122189363
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122189363
    reference: chr 5
allele count: 5
allele frequency: 5.087505087505087e-4
allele num: 9828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+10053G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.32-6G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+7975G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+7975G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+7975G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+7975G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+9133G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1184
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3641
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1034
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
hgvs: c.32-6G>A
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-122189388-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122189388
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122189388
    reference: chr 5
allele count: 4
allele frequency: 4.001600640256103e-4
allele num: 9996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+8000G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+8000G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+9158G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.51G>A
  hgvsp: ENSP00000422184.1:p.Cys18Tyr
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+8000G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+8000G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+10078G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys18Tyr
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: MQ

5-122189420-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122189420
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122189420
    reference: chr 5
allele count: 1
allele frequency: 1.036269430051813e-4
allele num: 9650
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+8032C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+8032C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+10110C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+8032C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*16C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+9190C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+8032C>T
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

5-122189429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122189429
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122189429
    reference: chr 5
allele count: 10
allele frequency: 1.063603488619443e-3
allele num: 9402
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*25C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+9199C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+8041C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+8041C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+10119C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+8041C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+8041C>T
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1621
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1490
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

5-122189430-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122189430
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122189430
    reference: chr 5
allele count: 3
allele frequency: 3.188097768331562e-4
allele num: 9410
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+8042G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+8042G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.177+10120G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.60+8042G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.304+9200G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*26G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+8042G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1559
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 722
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum

5-122226677-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226677
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226677
    reference: chr 5
allele count: 1
allele frequency: 6.994963626189144e-5
allele num: 14296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.61-45G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45289G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45289G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45289G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45752G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37215G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45752G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-122226678-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226678
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226678
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 14354
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.61-44T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45290T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45290T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45751T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45290T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45751T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37216T>C
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

5-122226724-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226724
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226724
    reference: chr 5
allele count: 2
allele frequency: 1.250156269533692e-4
allele num: 15998
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45336G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37262G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.63G>A
  hgvsp: ENST00000395451.4:c.63G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45336G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45336G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45705G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45705G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5430
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
hgvs: c.63G>A
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

5-122226725-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226725
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226725
    reference: chr 5
allele count: 1
allele frequency: 6.239860227130913e-5
allele num: 16026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45337G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.64G>T
  hgvsp: ENSP00000378837.4:p.Val22Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45337G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45337G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45704G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37263G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45704G>T
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1660
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val22Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

5-122226745-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226745
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226745
    reference: chr 5
allele count: 1
allele frequency: 6.122199093914534e-5
allele num: 16334
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45357C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45357C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45357C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45684C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45684C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.84C>G
  hgvsp: ENST00000395451.4:c.84C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37283C>G
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5768
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala28Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

5-122226746-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226746
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226746
    reference: chr 5
allele count: 1
allele frequency: 6.120700208103807e-5
allele num: 16338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.85T>C
  hgvsp: ENSP00000378837.4:p.Phe29Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37284T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45358T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45358T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45683T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45683T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45358T>C
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5780
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe29Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

5-122226755-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226755
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226755
    reference: chr 5
allele count: 1
allele frequency: 6.105006105006105e-5
allele num: 16380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45367A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.94A>G
  hgvsp: ENSP00000378837.4:p.Lys32Glu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45674A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45674A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45367A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45367A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37293A>G
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4523
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys32Glu
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

5-122226761-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226761
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226761
    reference: chr 5
allele count: 1
allele frequency: 6.099048548426445e-5
allele num: 16396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45373G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45373G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45668G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45373G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.100G>A
  hgvsp: ENSP00000378837.4:p.Glu34Lys
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45668G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37299G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1836
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu34Lys
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP

5-122226806-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226806
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226806
    reference: chr 5
allele count: 1
allele frequency: 6.119951040391677e-5
allele num: 16340
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45418A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45623A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.145A>G
  hgvsp: ENSP00000378837.4:p.Arg49Gly
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45623A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37344A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45418A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45418A>G
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4351
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg49Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-122226820-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226820
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226820
    reference: chr 5
allele count: 5
allele frequency: 3.086038760646834e-4
allele num: 16202
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37358G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45609G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45432G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.159G>A
  hgvsp: ENST00000395451.4:c.159G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45432G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45609G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45432G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1857
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 786
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: c.159G>A
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD

5-122226841-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226841
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226841
    reference: chr 5
allele count: 1
allele frequency: 6.300403225806451e-5
allele num: 15872
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45453C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45588C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45453C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.159+21C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45453C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45588C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37379C>G
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3269
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

5-122226848-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226848
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226848
    reference: chr 5
allele count: 314
allele frequency: 2.00844313675323e-2
allele num: 15634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45581T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.159+28T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45460T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45460T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45460T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37386T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45581T>C
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 2.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1504
  bin: 1.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 2.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 927
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 3.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2062
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1751
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 9.25e1
  variant carriers: 2
num of homozygotes: 4
population: East Asian
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

5-122226860-GTT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226860
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226858
    reference: chr 5
allele count: 1
allele frequency: 6.918500069185e-5
allele num: 14454
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45477_60+45478delTT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45477_60+45478delTT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37403_*58+37404delTT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.159+45_159+46delTT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45564_178-45563delTT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45564_305-45563delTT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45477_60+45478delTT
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: GTT
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD

5-122226867-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122226867
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122226868
    reference: chr 5
allele count: 3
allele frequency: 2.220248667850799e-4
allele num: 13512
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.60+45487dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.60+45487dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-45554dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.159+55dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.60+45487dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-45554dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*58+37413dupT
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 952
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1476
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

5-122272386-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272386
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272386
    reference: chr 5
allele count: 1
allele frequency: 9.520907913778659e-6
allele num: 105032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*59-43G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.61-43G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-43G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-43G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.61-43G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.61-43G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.160-43G>A
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16576
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13268
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16289
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2927
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6390
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5548
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 986
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1312
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

5-122272392-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272392
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272392
    reference: chr 5
allele count: 1
allele frequency: 9.474182851729039e-6
allele num: 105550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-37G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.61-37G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.160-37G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*59-37G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-37G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.61-37G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.61-37G>C
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21242
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4610
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6598
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2775
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3750
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 393
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

5-122272395-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272395
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272395
    reference: chr 5
allele count: 2
allele frequency: 1.886899258448591e-5
allele num: 105994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-34C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.61-34C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.61-34C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.160-34C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-34C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*59-34C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.61-34C>T
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7400
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6805
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9938
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3608
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24422
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6627
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3886
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

5-122272409-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272409
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272407
    reference: chr 5
allele count: 1
allele frequency: 8.944063824839454e-6
allele num: 111806
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-17_178-16delTT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*59-17_*59-16delTT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.61-17_61-16delTT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.160-17_160-16delTT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.61-17_61-16delTT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-17_305-16delTT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.61-17_61-16delTT
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2689
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1017
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36909
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: CTT
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

5-122272424-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272424
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272424
    reference: chr 5
allele count: 1
allele frequency: 8.422471153036301e-6
allele num: 118730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.61-5C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178-5C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*59-5C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.61-5C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.160-5C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.61-5C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305-5C>T
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39441
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3310
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1586
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4958
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5049
  bin: 6.75e1
  variant carriers: 0
hgvs: c.61-5C>T
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

5-122272429-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272429
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272429
    reference: chr 5
allele count: 1
allele frequency: 8.347942232239753e-6
allele num: 119790
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.61G>T
  hgvsp: ENSP00000422535.1:p.Val21Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.61G>T
  hgvsp: ENSP00000261369.4:p.Val21Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.61G>T
  hgvsp: ENSP00000424149.1:p.Val21Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.178G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.1G>T
  hgvsp: ENSP00000425919.1:p.Val1?
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.305G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.2G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*59G>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.160G>T
  hgvsp: ENSP00000378837.4:p.Val54Leu
  variant of: http://identifiers.org/hgnc/21533
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val1?
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ

5-122272443-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272443
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272443
    reference: chr 5
allele count: 1
allele frequency: 8.286926544683108e-6
allele num: 120672
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.15A>G
  hgvsp: ENST00000503149.1:c.15A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.75A>G
  hgvsp: ENST00000506996.1:c.75A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.75A>G
  hgvsp: ENST00000513881.1:c.75A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.319A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.16A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.174A>G
  hgvsp: ENST00000395451.4:c.174A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.75A>G
  hgvsp: ENST00000261369.4:c.75A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.192A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*73A>G
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3415
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu25Glu
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

5-122272455-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272455
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272455
    reference: chr 5
allele count: 1
allele frequency: 8.267879288962381e-6
allele num: 120950
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.28T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.204T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*85T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.186T>C
  hgvsp: ENST00000395451.4:c.186T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.27T>C
  hgvsp: ENST00000503149.1:c.27T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.87T>C
  hgvsp: ENST00000261369.4:c.87T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.87T>C
  hgvsp: ENST00000513881.1:c.87T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.87T>C
  hgvsp: ENST00000506996.1:c.87T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.331T>C
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11202
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4962
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn29Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

5-122272456-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272456
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272456
    reference: chr 5
allele count: 1
allele frequency: 8.267332462507647e-6
allele num: 120958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.29G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.88G>A
  hgvsp: ENSP00000261369.4:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.205G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.88G>A
  hgvsp: ENSP00000422535.1:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.88G>A
  hgvsp: ENSP00000424149.1:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.332G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*86G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.187G>A
  hgvsp: ENSP00000378837.4:p.Gly63Arg
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.28G>A
  hgvsp: ENSP00000425919.1:p.Gly10Arg
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 40157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly30Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

5-122272474-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272474
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272474
    reference: chr 5
allele count: 8
allele frequency: 6.608511763150938e-5
allele num: 121056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.106G>C
  hgvsp: ENSP00000424149.1:p.Glu36Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.47G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.106G>C
  hgvsp: ENSP00000422535.1:p.Glu36Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.223G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.46G>C
  hgvsp: ENSP00000425919.1:p.Glu16Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*104G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.205G>C
  hgvsp: ENSP00000378837.4:p.Glu69Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.106G>C
  hgvsp: ENSP00000261369.4:p.Glu36Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.350G>C
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11254
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu36Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

5-122272485-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272485
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272485
    reference: chr 5
allele count: 1
allele frequency: 8.264326209484141e-6
allele num: 121002
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*115C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.58C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.117C>T
  hgvsp: ENST00000506996.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.117C>T
  hgvsp: ENST00000513881.1:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.361C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.234C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.57C>T
  hgvsp: ENST00000503149.1:c.57C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.216C>T
  hgvsp: ENST00000395451.4:c.216C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.117C>T
  hgvsp: ENST00000261369.4:c.117C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1032
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11280
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Tyr39Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD

5-122272488-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272488
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272488
    reference: chr 5
allele count: 7
allele frequency: 5.78541084681885e-5
allele num: 120994
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.364C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.120C>T
  hgvsp: ENST00000513881.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.61C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.120C>T
  hgvsp: ENST00000261369.4:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*118C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.60C>T
  hgvsp: ENST00000503149.1:c.60C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.120C>T
  hgvsp: ENST00000506996.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.219C>T
  hgvsp: ENST00000395451.4:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.237C>T
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11291
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser40Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

5-122272489-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272489
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272489
    reference: chr 5
allele count: 1
allele frequency: 8.265829062654984e-6
allele num: 120980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.62G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*119G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.121G>A
  hgvsp: ENSP00000424149.1:p.Glu41Lys
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.121G>A
  hgvsp: ENSP00000261369.4:p.Glu41Lys
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.238G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.365G>A
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.121G>A
  hgvsp: ENSP00000422535.1:p.Glu41Lys
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.61G>A
  hgvsp: ENSP00000425919.1:p.Glu21Lys
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.220G>A
  hgvsp: ENSP00000378837.4:p.Glu74Lys
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11293
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39918
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4961
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu41Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP

5-122272496-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272496
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272496
    reference: chr 5
allele count: 1
allele frequency: 8.272803984182399e-6
allele num: 120878
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.128A>T
  hgvsp: ENSP00000261369.4:p.His43Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.227A>T
  hgvsp: ENSP00000378837.4:p.His76Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.372A>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*126A>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.128A>T
  hgvsp: ENSP00000422535.1:p.His43Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.245A>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.128A>T
  hgvsp: ENSP00000424149.1:p.His43Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.68A>T
  hgvsp: ENSP00000425919.1:p.His23Leu
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.69A>T
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44247
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His43Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

5-122272499-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272499
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272499
    reference: chr 5
allele count: 1
allele frequency: 8.275542461808372e-6
allele num: 120838
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.248C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.230C>G
  hgvsp: ENSP00000378837.4:p.Ala77Gly
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.375C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*129C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.131C>G
  hgvsp: ENSP00000422535.1:p.Ala44Gly
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.71C>G
  hgvsp: ENSP00000425919.1:p.Ala24Gly
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.131C>G
  hgvsp: ENSP00000261369.4:p.Ala44Gly
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.72C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.131C>G
  hgvsp: ENSP00000424149.1:p.Ala44Gly
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala44Gly
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

5-122272499-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272499
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272499
    reference: chr 5
allele count: 1
allele frequency: 8.275542461808372e-6
allele num: 120838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.248C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.131C>T
  hgvsp: ENSP00000261369.4:p.Ala44Val
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.72C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.230C>T
  hgvsp: ENSP00000378837.4:p.Ala77Val
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*129C>T
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.131C>T
  hgvsp: ENSP00000422535.1:p.Ala44Val
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.71C>T
  hgvsp: ENSP00000425919.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.131C>T
  hgvsp: ENSP00000424149.1:p.Ala44Val
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.375C>T
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3445
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11258
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5174
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 681
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala44Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

5-122272503-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272503
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272503
    reference: chr 5
allele count: 1
allele frequency: 8.282122210995345e-6
allele num: 120742
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.234G>C
  hgvsp: ENSP00000378837.4:p.Leu78Phe
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.135G>C
  hgvsp: ENSP00000261369.4:p.Leu45Phe
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.75G>C
  hgvsp: ENSP00000425919.1:p.Leu25Phe
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.135G>C
  hgvsp: ENSP00000422535.1:p.Leu45Phe
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*133G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.76G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.135G>C
  hgvsp: ENSP00000424149.1:p.Leu45Phe
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.252G>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.379G>C
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11269
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3453
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu45Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

5-122272506-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272506
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272506
    reference: chr 5
allele count: 4
allele frequency: 3.313782019418762e-5
allele num: 120708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.138C>G
  hgvsp: ENSP00000424149.1:p.His46Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.138C>G
  hgvsp: ENSP00000422535.1:p.His46Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.138C>G
  hgvsp: ENSP00000261369.4:p.His46Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.382C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.78C>G
  hgvsp: ENSP00000425919.1:p.His26Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.237C>G
  hgvsp: ENSP00000378837.4:p.His79Gln
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.255C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*136C>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.79C>G
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11324
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
hgvs: p.His46Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff

5-122272511-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272511
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272511
    reference: chr 5
allele count: 1
allele frequency: 8.293799555452344e-6
allele num: 120572
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.143A>G
  hgvsp: ENSP00000422535.1:p.Lys48Arg
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.387A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.260A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.143A>G
  hgvsp: ENSP00000261369.4:p.Lys48Arg
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.143A>G
  hgvsp: ENSP00000424149.1:p.Lys48Arg
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*141A>G
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.83A>G
  hgvsp: ENSP00000425919.1:p.Lys28Arg
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.242A>G
  hgvsp: ENSP00000378837.4:p.Lys81Arg
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.84A>G
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38906
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11304
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3434
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43375
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Lys48Arg
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

5-122272514-T-TGCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272514
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272517
    reference: chr 5
allele count: 1
allele frequency: 8.30357884248111e-6
allele num: 120430
alternate allele: TGCA
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.144+2_144+3insGCA
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.144+2_144+3insGCA
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*142+2_*142+3insGCA
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.243+2_243+3insGCA
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.84+2_84+3insGCA
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.144+2_144+3insGCA
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.261+2_261+3insGCA
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.388+2_388+3insGCA
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.85+2_85+3insGCA
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1033
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42802
  bin: 6.25e1
  variant carriers: 0
hgvs: c.144+2_144+3insGCA
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

5-122272521-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272521
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272521
    reference: chr 5
allele count: 1
allele frequency: 8.347942232239753e-6
allele num: 119790
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.144+9T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.388+9T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.144+9T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.84+9T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.85+9T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.144+9T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.261+9T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.243+9T>C
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*142+9T>C
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4980
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1929
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

5-122272527-G-GT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272527
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272528
    reference: chr 5
allele count: 389
allele frequency: 3.252943537597003e-3
allele num: 119584
alternate allele: GT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000378837
  ensembl transcript: ENST00000395451
  gene symbol: SNX24
  hgvsc: ENST00000395451.4:c.243+22dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000513613
  gene symbol: SNX24
  hgvsc: ENST00000513613.1:n.261+22dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000511211
  gene symbol: SNX24
  hgvsc: ENST00000511211.1:n.388+22dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000425919
  ensembl transcript: ENST00000503149
  gene symbol: SNX24
  hgvsc: ENST00000503149.1:c.84+22dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl transcript: ENST00000502387
  gene symbol: SNX24
  hgvsc: ENST00000502387.1:n.85+22dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.144+22dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000261369
  ensembl transcript: ENST00000261369
  gene symbol: SNX24
  hgvsc: ENST00000261369.4:c.144+22dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*142+22dupT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000424149
  ensembl transcript: ENST00000513881
  gene symbol: SNX24
  hgvsc: ENST00000513881.1:c.144+22dupT
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 4.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 6.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 3.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11206
  bin: 2.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 35020
  bin: 2.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 9.75e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 3.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 7.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2194
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 2
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

5-122272548-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 122272548
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 122272547
    reference: chr 5
allele count: 1
allele frequency: 8.463387386167439e-6
allele num: 118156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422184
  ensembl transcript: ENST00000511545
  gene symbol: SNX24
  hgvsc: ENST00000511545.1:c.*142+37delT
  variant of: http://identifiers.org/hgnc/21533
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000064652
  ensembl protein: ENSP00000422535
  ensembl transcript: ENST00000506996
  gene symbol: SNX24
  hgvsc: ENST00000506996.1:c.144+37delT
  variant of: http://identifiers.org/hgnc/21533
canonical: true
consequence: intron
filter: PASS
num of homozygotes: 0
reference allele: GT

GenotypeQuality
all individuals: 268
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29293
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 867
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 129
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1674
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 258
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.533818644427168e-5
allele num: 28298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5510
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.074688796680498e-4
allele num: 4820
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 7.708e0

VQSLOD
type: SiteQuality
SIO_000300: -6.006e-1

QD
type: SiteQuality
SIO_000300: 7.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.32e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

DP
type: SiteQuality
SIO_000300: 7.14959e5

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 259
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 39
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.302291790502609e-5
allele num: 30282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3996
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5084
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1782
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.46e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.27e-2

DP
type: SiteQuality
SIO_000300: 7.46248e5

VQSLOD
type: SiteQuality
SIO_000300: -1.011e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 6.72e0

GenotypeQuality
all individuals: 547
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27123
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20027
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.027184113337773e-5
allele num: 33034
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5682
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6416
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-1

VQSLOD
type: SiteQuality
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QD
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SIO_000300: 1.175e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.981e0

MQRankSum
type: SiteQuality
SIO_000300: 3.88e-1

MQ
type: SiteQuality
SIO_000300: 5.823e1

DP
type: SiteQuality
SIO_000300: 7.86228e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.84e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 194
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5792
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 340
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.982581722739203e-5
allele num: 33528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2082
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

FS
type: SiteQuality
SIO_000300: 5.698e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.395e0

QD
type: SiteQuality
SIO_000300: 9.93e0

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

DP
type: SiteQuality
SIO_000300: 7.93665e5

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2118
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.781895937277263e-4
allele num: 5612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 33900
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.5220700152207e-4
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5854
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4484
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.99254e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.17e-2

MQ
type: SiteQuality
SIO_000300: 5.906e1

QD
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
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SIO_000300: -2.758e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.45e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 4.651162790697675e-4
allele num: 2150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34184
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4538
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5894
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5658
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.517e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.554e0

QD
type: SiteQuality
SIO_000300: 6.9e0

DP
type: SiteQuality
SIO_000300: 8.00312e5

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5940
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.823433496389471e-5
allele num: 34344
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.093e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

DP
type: SiteQuality
SIO_000300: 8.02215e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4648
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.492537313432836e-4
allele num: 6700
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.186e0

FS
type: SiteQuality
SIO_000300: 6.154e0

VQSLOD
type: SiteQuality
SIO_000300: -1.447e0

MQRankSum
type: SiteQuality
SIO_000300: -1.749e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

InbreedingCoeff
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SIO_000300: -1.17e-2

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

DP
type: SiteQuality
SIO_000300: 8.03512e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5700
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2272
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.517450682852807e-4
allele num: 6590
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4674
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 34922
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.506e-1

ReadPosRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.039e0

InbreedingCoeff
type: SiteQuality
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DP
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.717552887364208e-5
allele num: 34980
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2278
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5700
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
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ClippingRankSum
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MQRankSum
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FS
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BaseQRankSum
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35116
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

East Asian
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Other
type: Population
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allele num: 356
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South Asian
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allele frequency: 1.518833535844471e-4
allele num: 6584
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2278
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
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VQSLOD
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FS
type: SiteQuality
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MQ
type: SiteQuality
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DP
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.87092328892972e-5
allele num: 34832
num of homozygotes: 0

East Asian
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European (Finnish)
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African
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Other
type: Population
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allele frequency: 0.0e0
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.25e-1

VQSLOD
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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FS
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MQ
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QD
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 366
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 4714
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34832
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.531393568147014e-4
allele num: 6530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2292
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.25e-1

QD
type: SiteQuality
SIO_000300: 1.649e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.294e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

MQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

DP
type: SiteQuality
SIO_000300: 7.48863e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4
bin: 9.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5874
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4674
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2276
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 5.819366852886406e-5
allele num: 34368
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5590
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

DP
type: SiteQuality
SIO_000300: 7.25192e5

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.57e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.166e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.4e-1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 30544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3910
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.870557426112982e-4
allele num: 5346
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.18e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

FS
type: SiteQuality
SIO_000300: 8.18e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.034e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.34e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.301e0

DP
type: SiteQuality
SIO_000300: 6.0408e5

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 5058
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.561475409836066e-4
allele num: 3904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5244
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1552
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.90426e5

MQRankSum
type: SiteQuality
SIO_000300: -5.49e-1

FS
type: SiteQuality
SIO_000300: 8.318e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.33e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.76e-1

QD
type: SiteQuality
SIO_000300: 1.155e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3742
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 5.907837731390311e-4
allele num: 5078
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.036e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

QD
type: SiteQuality
SIO_000300: 8.76e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.031e0

DP
type: SiteQuality
SIO_000300: 5.6192e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 5117
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 199
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variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 2.692514808831449e-4
allele num: 3714
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 6.289308176100629e-4
allele num: 4770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29178
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

QD
type: SiteQuality
SIO_000300: 1.08e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

DP
type: SiteQuality
SIO_000300: 5.58335e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29138
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 278
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4766
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3688
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1436
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.44e-2

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.682e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 4856
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3602
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 3.481166887140569e-5
allele num: 28726
num of homozygotes: 0

South Asian
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4766
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1418
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.59e0

VQSLOD
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DP
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
allele num: 4680
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4558
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.883506343713956e-4
allele num: 3468
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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DP
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
type: SiteQuality
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FS
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MQ
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

African
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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allele frequency: 2.292526364053187e-4
allele num: 4362
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 27824
num of homozygotes: 0

DP
type: SiteQuality
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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QD
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InbreedingCoeff
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4680
num of homozygotes: 0

South Asian
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allele count: 7
allele frequency: 1.604768454837231e-3
allele num: 4362
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 27824
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4558
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

InbreedingCoeff
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FS
type: SiteQuality
SIO_000300: 6.73e-1

BaseQRankSum
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MQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ClippingRankSum
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MQ
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SIO_000300: 6.0e1

QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.26271e5

VQSLOD
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ReadPosRankSum
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SIO_000300: 2.99e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Latino
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allele frequency: 0.0e0
allele num: 4020
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1096
num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 1.166951921580831e-4
allele num: 25708
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4016
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

African
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allele count: 4
allele frequency: 1.309757694826457e-3
allele num: 3054
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 2.446183953033268e-4
allele num: 4088
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.762e1

FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-1

ReadPosRankSum
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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DP
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QD
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SIO_000300: 1.33e0

VQSLOD
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SIO_000300: -3.55e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 3562
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 4512
num of homozygotes: 0

South Asian
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allele frequency: 4.812319538017325e-4
allele num: 4156
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4456
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1344
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 26938
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.242e0

VQSLOD
type: SiteQuality
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ClippingRankSum
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SIO_000300: 6.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-2

DP
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ReadPosRankSum
type: SiteQuality
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QD
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SIO_000300: 1.19e1

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4340
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4462
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 26526
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African
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South Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
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VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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QD
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ReadPosRankSum
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MQ
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SIO_000300: 6.0e1

BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.788e0

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.06538e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 4.155239757333998e-5
allele num: 24066
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4100
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 3802
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1230
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
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BaseQRankSum
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SIO_000300: -2.148e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
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SIO_000300: 3.36e-1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.453e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.14e-2

DP
type: SiteQuality
SIO_000300: 4.90757e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 172
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South Asian
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allele count: 1
allele frequency: 1.646361540994402e-4
allele num: 6074
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Latino
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

MQRankSum
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SIO_000300: -2.48e-1

DP
type: SiteQuality
SIO_000300: 8.8783e4

FS
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
SIO_000300: 5.93e1

BaseQRankSum
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ReadPosRankSum
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 7.849293563579278e-4
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2324
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Latino
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allele frequency: 1.136363636363636e-2
allele num: 88
num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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FS
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ReadPosRankSum
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DP
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
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Other
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African
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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allele num: 6754
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QD
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VQSLOD
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MQ
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ReadPosRankSum
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DP
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BaseQRankSum
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FS
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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Other
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East Asian
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African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 2.019386106623586e-3
allele num: 2476
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FS
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DP
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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QD
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MQ
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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European (Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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Latino
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FS
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InbreedingCoeff
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DP
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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QD
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MQ
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SIO_000300: 5.89e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 86
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2420
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African
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allele frequency: 5.494505494505495e-3
allele num: 182
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6728
num of homozygotes: 0

MQ
type: SiteQuality
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DP
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MQRankSum
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QD
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FS
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InbreedingCoeff
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SIO_000300: -2.8e-2

ReadPosRankSum
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BaseQRankSum
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VQSLOD
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SIO_000300: -3.234e0

ClippingRankSum
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SIO_000300: 1.23e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele frequency: 4.226542688081149e-4
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South Asian
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allele frequency: 1.376567757724075e-3
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Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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DP
type: SiteQuality
SIO_000300: 9.5323e4

FS
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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MQ
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QD
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 2366
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Other
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allele frequency: 9.259259259259259e-3
allele num: 108
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 3.057169061449098e-4
allele num: 6542
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ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

BaseQRankSum
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SIO_000300: -4.21e-1

FS
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InbreedingCoeff
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SIO_000300: -3.14e-2

MQ
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ReadPosRankSum
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DP
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QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -7.439e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 6022
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.061855670103093e-4
allele num: 4850
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1614
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.43e-1

VQSLOD
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.691e0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 1.96031e5

BaseQRankSum
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SIO_000300: -3.349e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.35e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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QD
type: SiteQuality
SIO_000300: 1.707e1

VQSLOD
type: SiteQuality
SIO_000300: -6.811e-1

DP
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SIO_000300: 1.96737e5

InbreedingCoeff
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SIO_000300: -6.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.482e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 486
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.850596842510589e-4
allele num: 5194
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.01e-1

ClippingRankSum
type: SiteQuality
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MQ
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SIO_000300: 5.933e1

InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 4.41e-1

QD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7330
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

East Asian
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African
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
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QD
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ReadPosRankSum
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FS
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InbreedingCoeff
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MQ
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VQSLOD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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Latino
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Other
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African
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European (Finnish)
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East Asian
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South Asian
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QD
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ReadPosRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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FS
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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European (Non-Finnish)
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South Asian
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Latino
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Other
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East Asian
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European (Finnish)
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num of homozygotes: 0

FS
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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South Asian
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African
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European (Non-Finnish)
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European (Finnish)
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East Asian
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Other
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InbreedingCoeff
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VQSLOD
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FS
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QD
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ReadPosRankSum
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MQRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 5.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.271e0

GenotypeQuality
all individuals: 5829
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 782
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.314751511964239e-4
allele num: 7606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5282
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.35e-1

MQ
type: SiteQuality
SIO_000300: 5.883e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.17e-1

QD
type: SiteQuality
SIO_000300: 6.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.627e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.500000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.067e0

FS
type: SiteQuality
SIO_000300: 1.533e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.33e-1

DP
type: SiteQuality
SIO_000300: 2.45292e5

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 785
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5691
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.323101349563376e-4
allele num: 7558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.26e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.319e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.1e0

DP
type: SiteQuality
SIO_000300: 2.44091e5

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.39e-1

GenotypeQuality
all individuals: 90
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5259
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 155
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 5.543237250554324e-3
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7450
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5250
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 486
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.62e-1

FS
type: SiteQuality
SIO_000300: 1.312e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

MQRankSum
type: SiteQuality
SIO_000300: 3.59e-1

DP
type: SiteQuality
SIO_000300: 2.40224e5

MQ
type: SiteQuality
SIO_000300: 5.933e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.06e0

GenotypeQuality
all individuals: 591
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 783
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variant carriers: 1

GenotypeQuality
all individuals: 496
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1618
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.382361072712192e-4
allele num: 7234
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 290
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.598e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.36e-1

DP
type: SiteQuality
SIO_000300: 2.19865e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.832e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.041e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.34e0

GenotypeQuality
all individuals: 674
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 769
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 823
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 227
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1028
bin: 9.75e1
variant carriers: 304

GenotypeQuality
all individuals: 2005
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 498
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 1.041666666666667e-2
allele num: 288
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.01010101010101e-2
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 118
allele frequency: 1.669024045261669e-2
allele num: 7070
num of homozygotes: 1

African
type: Population
allele count: 13
allele frequency: 1.467268623024831e-2
allele num: 886
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 144
allele frequency: 2.82574568288854e-2
allele num: 5096
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 34
allele frequency: 2.101359703337454e-2
allele num: 1618
num of homozygotes: 1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

QD
type: SiteQuality
SIO_000300: 1.498e1

VQSLOD
type: SiteQuality
SIO_000300: 5.95e0

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

DP
type: SiteQuality
SIO_000300: 2.1052e5

GenotypeQuality
all individuals: 394
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1070
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
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variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.575299306868305e-4
allele num: 6348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.58e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQ
type: SiteQuality
SIO_000300: 6.153e1

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.92684e5

QD
type: SiteQuality
SIO_000300: 8.24e0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 993
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 135
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GenotypeQuality
all individuals: 766
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variant carriers: 0

GenotypeQuality
all individuals: 54
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variant carriers: 0

GenotypeQuality
all individuals: 359
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variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 4.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 5.222841225626741e-4
allele num: 5744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.07e0

MQRankSum
type: SiteQuality
SIO_000300: 7.85e-1

DP
type: SiteQuality
SIO_000300: 1.91003e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.41e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.18e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.34e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.8e-1

GenotypeQuality
all individuals: 764
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 4.25e1
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GenotypeQuality
all individuals: 478
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variant carriers: 0

GenotypeQuality
all individuals: 5674
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
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variant carriers: 0

GenotypeQuality
all individuals: 4950
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 570
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variant carriers: 0

GenotypeQuality
all individuals: 3777
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3508
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.30925339787749e-5
allele num: 10742
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 818
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57038
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14442
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.291e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.36e-1

QD
type: SiteQuality
SIO_000300: 9.15e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.33699e6

VQSLOD
type: SiteQuality
SIO_000300: -1.87e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 4.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

GenotypeQuality
all individuals: 1927
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
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GenotypeQuality
all individuals: 21090
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1356
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4954
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1564
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
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GenotypeQuality
all individuals: 5108
bin: 3.25e1
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GenotypeQuality
all individuals: 380
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GenotypeQuality
all individuals: 664
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7298
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.156336725254394e-4
allele num: 8648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57328
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

DP
type: SiteQuality
SIO_000300: 1.380658e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.924e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

GenotypeQuality
all individuals: 4955
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variant carriers: 2

GenotypeQuality
all individuals: 1392
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
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variant carriers: 0

GenotypeQuality
all individuals: 580
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variant carriers: 0

GenotypeQuality
all individuals: 1014
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variant carriers: 0

GenotypeQuality
all individuals: 496
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variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4531
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.473669584549118e-5
allele num: 57576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10818
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14554
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.411985e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.26e-1

MQ
type: SiteQuality
SIO_000300: 5.984e1

QD
type: SiteQuality
SIO_000300: 1.333e1

FS
type: SiteQuality
SIO_000300: 1.574e0

MQRankSum
type: SiteQuality
SIO_000300: -7.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.739e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.157e0

GenotypeQuality
all individuals: 233
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 509
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1674
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.641766540797899e-5
allele num: 60910
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8040
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15292
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

QD
type: SiteQuality
SIO_000300: 1.581e1

VQSLOD
type: SiteQuality
SIO_000300: -6.161e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.63e-1

DP
type: SiteQuality
SIO_000300: 1.554335e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.27e-1

FS
type: SiteQuality
SIO_000300: 1.4352e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.26e-1

MQ
type: SiteQuality
SIO_000300: 5.9e1

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1284
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16240
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.761170492377782e-5
allele num: 11414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.636233e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 8.890000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.2e-2

QD
type: SiteQuality
SIO_000300: 1.329e1

VQSLOD
type: SiteQuality
SIO_000300: 6.840000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e-1

GenotypeQuality
all individuals: 4960
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.113964294448521e-5
allele num: 16356
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10210
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65724
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.909999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.374e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.647622e6

VQSLOD
type: SiteQuality
SIO_000300: 9.2e-2

QD
type: SiteQuality
SIO_000300: 1.517e1

MQ
type: SiteQuality
SIO_000300: 5.928e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 32
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.693679720822024e-5
allele num: 10316
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66292
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.08e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.292e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 1.257e1

MQRankSum
type: SiteQuality
SIO_000300: 3.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.94e-1

MQ
type: SiteQuality
SIO_000300: 5.851e1

DP
type: SiteQuality
SIO_000300: 1.656727e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 12
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66458
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

VQSLOD
type: SiteQuality
SIO_000300: -1.294e0

FS
type: SiteQuality
SIO_000300: 4.898e0

DP
type: SiteQuality
SIO_000300: 1.659666e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQ
type: SiteQuality
SIO_000300: 5.887e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.405e0

QD
type: SiteQuality
SIO_000300: 1.091e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16478
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504664459825459e-5
allele num: 66460
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.883e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.52e-1

DP
type: SiteQuality
SIO_000300: 1.659886e6

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.099e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10364
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 8
allele frequency: 4.85319097306479e-4
allele num: 16484
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e-2

ReadPosRankSum
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DP
type: SiteQuality
SIO_000300: 1.660915e6

FS
type: SiteQuality
SIO_000300: 1.652e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.124e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.57e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1722
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.156604210039325e-4
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10360
num of homozygotes: 0

South Asian
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allele num: 16484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66488
num of homozygotes: 0

Other
type: Population
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ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

FS
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.659762e6

BaseQRankSum
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MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
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InbreedingCoeff
type: SiteQuality
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QD
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SIO_000300: 6.95e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.512635379061372e-5
allele num: 66480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.600104004160167e-4
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.066488716330988e-5
allele num: 16484
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.506e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.66013e6

MQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.978e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

QD
type: SiteQuality
SIO_000300: 9.789999999999999e0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 44445
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504392827055001e-5
allele num: 66472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.084e1

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.14e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.094e0

FS
type: SiteQuality
SIO_000300: 1.3612e1

DP
type: SiteQuality
SIO_000300: 1.659452e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10352
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506024096385542e-5
allele num: 66400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.21e0

DP
type: SiteQuality
SIO_000300: 1.657181e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.5e-2

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.26e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1718
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50652324565368e-5
allele num: 66378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.656416e6

MQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

FS
type: SiteQuality
SIO_000300: 8.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.931e1

QD
type: SiteQuality
SIO_000300: 1.282e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 46
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50652324565368e-5
allele num: 66378
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

FS
type: SiteQuality
SIO_000300: 8.88e-1

DP
type: SiteQuality
SIO_000300: 1.656416e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.69e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

QD
type: SiteQuality
SIO_000300: 1.282e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507977199384745e-5
allele num: 66314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.654405e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e0

QD
type: SiteQuality
SIO_000300: 2.284e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.984e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.207e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.4330900243309e-4
allele num: 16440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.395e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

DP
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: 1.26e0

BaseQRankSum
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SIO_000300: -2.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.680555555555556e-5
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -8.149999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.278e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

VQSLOD
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SIO_000300: 1.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
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SIO_000300: 7.82e-1

ClippingRankSum
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SIO_000300: -1.313e0

DP
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SIO_000300: 1.649718e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4961
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 278
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511990081345066e-5
allele num: 66138
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

QD
type: SiteQuality
SIO_000300: 1.946e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.73e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.0e0

MQ
type: SiteQuality
SIO_000300: 5.56e1

MQRankSum
type: SiteQuality
SIO_000300: -1.126e0

DP
type: SiteQuality
SIO_000300: 1.645802e6

GenotypeQuality
all individuals: 512
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1703
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 881
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39778
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4962
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 7.5e0
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52151421094273e-5
allele num: 65724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

QD
type: SiteQuality
SIO_000300: 1.406e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.429999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.86e0

VQSLOD
type: SiteQuality
SIO_000300: -3.448e-1

DP
type: SiteQuality
SIO_000300: 1.629455e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 680
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 811
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4913
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 250
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39261
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1569
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5296
bin: 9.75e1
variant carriers: 381

GenotypeQuality
all individuals: 1051
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 1

Latino
type: Population
allele count: 13
allele frequency: 1.132996339550288e-3
allele num: 11474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.149305128520478e-5
allele num: 16262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 77
allele frequency: 1.174066845572091e-3
allele num: 65584
num of homozygotes: 1

African
type: Population
allele count: 297
allele frequency: 2.890229661346828e-2
allele num: 10276
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.124e1

MQ
type: SiteQuality
SIO_000300: 6.016e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 1.631417e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.2e0