5-840364-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840364
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840364
    reference: chr 5
allele count: 4
allele frequency: 3.235722375020223e-4
allele num: 12362
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.391C>T
  hgvsp: ENSP00000427067.1:p.Leu131Phe
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+246C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+246C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+246C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+246C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+246C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2771C>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23353
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21383
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Leu131Phe
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

5-840380-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840380
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840380
    reference: chr 5
allele count: 1
allele frequency: 7.935248373274083e-5
allele num: 12602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.375C>T
  hgvsp: ENST00000511539.1:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+230C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+230C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+230C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+230C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2787C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+230C>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22710
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ala125Ala
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

5-840386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840386
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840386
    reference: chr 5
allele count: 1
allele frequency: 7.885191610156126e-5
allele num: 12682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+224G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2793G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.369G>A
  hgvsp: ENST00000511539.1:c.369G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+224G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+224G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+224G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+224G>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26611
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1974
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 5.25e1
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genotype quality: GenotypeQuality
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  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24108
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln123Gln
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum

5-840391-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840391
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840391
    reference: chr 5
allele count: 107
allele frequency: 8.73469387755102e-3
allele num: 12250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.364A>G
  hgvsp: ENSP00000427067.1:p.Thr122Ala
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+219A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+219A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+219A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+219A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2798A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+219A>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26968
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 2.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1724
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 3925
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 7.75e1
  variant carriers: 5
hgvs: p.Thr122Ala
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

5-840399-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840399
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840399
    reference: chr 5
allele count: 1
allele frequency: 7.750736319950395e-5
allele num: 12902
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+211C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+211C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.356C>T
  hgvsp: ENSP00000427067.1:p.Ser119Phe
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+211C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+211C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2806C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+211C>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28850
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser119Phe
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

5-840399-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840399
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840399
    reference: chr 5
allele count: 1
allele frequency: 7.750736319950395e-5
allele num: 12902
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+211C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.356C>G
  hgvsp: ENSP00000427067.1:p.Ser119Cys
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2806C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+211C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+211C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+211C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+211C>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28850
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2833
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25892
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2393
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser119Cys
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ

5-840407-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840407
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840407
    reference: chr 5
allele count: 6
allele frequency: 4.621072088724584e-4
allele num: 12984
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+203A>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+203A>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2814A>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+203A>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+203A>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.348A>T
  hgvsp: ENSP00000427067.1:p.Glu116Asp
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+203A>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30257
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27375
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 728
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Glu116Asp
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

5-840444-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840444
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840444
    reference: chr 5
allele count: 1
allele frequency: 6.976419701409237e-5
allele num: 14334
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+166G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+166G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+166G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.311G>C
  hgvsp: ENSP00000427067.1:p.Ser104Thr
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+166G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2851G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+166G>C
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11858
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2055
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10002
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1907
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser104Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-840454-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840454
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840454
    reference: chr 5
allele count: 1
allele frequency: 6.573757559821194e-5
allele num: 15212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+156T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+156T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.301T>G
  hgvsp: ENSP00000427067.1:p.Ser101Ala
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2861T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+156T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+156T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+156T>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30549
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15292
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2176
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1119
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1897
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser101Ala
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

5-840471-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840471
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840471
    reference: chr 5
allele count: 1
allele frequency: 5.343022013250694e-5
allele num: 18716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+139T>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+139T>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2878T>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+139T>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+139T>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.284T>C
  hgvsp: ENSP00000427067.1:p.Met95Thr
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+139T>C
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2099
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24831
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 390
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met95Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

5-840472-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840472
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840472
    reference: chr 5
allele count: 2
allele frequency: 1.05999576001696e-4
allele num: 18868
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+138A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.283A>G
  hgvsp: ENSP00000427067.1:p.Met95Val
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+138A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2879A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+138A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+138A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+138A>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22577
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 866
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19838
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1905
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1203
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2681
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1282
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 822
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met95Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

5-840474-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840474
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840474
    reference: chr 5
allele count: 4
allele frequency: 2.087246921310791e-4
allele num: 19164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+136G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2881G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+136G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+136G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+136G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+136G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.281G>A
  hgvsp: ENSP00000427067.1:p.Arg94His
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23173
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2672
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 477
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 886
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1921
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20097
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 22486
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2690
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg94His
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

5-840475-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840475
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840475
    reference: chr 5
allele count: 1
allele frequency: 4.965243296921549e-5
allele num: 20140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+135C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2882C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+135C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+135C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.280C>T
  hgvsp: ENSP00000427067.1:p.Arg94Cys
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+135C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+135C>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23777
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21760
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1669
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2727
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg94Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

5-840475-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840475
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840475
    reference: chr 5
allele count: 24
allele frequency: 1.191658391261172e-3
allele num: 20140
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.280C>G
  hgvsp: ENSP00000427067.1:p.Arg94Gly
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+135C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2882C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+135C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+135C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+135C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+135C>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2679
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23777
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2757
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1219
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21760
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.75e1
  variant carriers: 2
hgvs: p.Arg94Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD

5-840476-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840476
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840476
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 20898
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+134G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.279G>A
  hgvsp: ENST00000511539.1:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2883G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+134G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+134G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+134G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+134G>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24314
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 614
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1993
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 960
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 301
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 8.25e1
  variant carriers: 1
hgvs: p.Val93Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/5-840478-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840478
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840478
    reference: chr 5
allele count: 1
allele frequency: 4.658963846440551e-5
allele num: 21464
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+132G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2885G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+132G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+132G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.277G>T
  hgvsp: ENSP00000427067.1:p.Val93Leu
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+132G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+132G>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25233
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22455
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1063
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val93Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

5-840478-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840478
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840478
    reference: chr 5
allele count: 1
allele frequency: 4.658963846440551e-5
allele num: 21464
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2885G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+132G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+132G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+132G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+132G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.277G>C
  hgvsp: ENSP00000427067.1:p.Val93Leu
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+132G>C
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25233
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2866
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val93Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

5-840480-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840480
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840480
    reference: chr 5
allele count: 1
allele frequency: 4.515080368430558e-5
allele num: 22148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+130G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2887G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.275G>C
  hgvsp: ENSP00000427067.1:p.Arg92Pro
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+130G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+130G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+130G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+130G>C
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26123
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19307
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23647
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg92Pro
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-840480-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840480
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840480
    reference: chr 5
allele count: 2
allele frequency: 9.030160736861116e-5
allele num: 22148
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+130G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2887G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.275G>A
  hgvsp: ENSP00000427067.1:p.Arg92His
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+130G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+130G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+130G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+130G>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26123
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19307
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Arg92His
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ

5-840480-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840480
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840479
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 22148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2888delC
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+129delC
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+129delC
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.274delC
  hgvsp: ENSP00000427067.1:p.Arg92ValfsTer29
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+129delC
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+129delC
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+129delC
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: frameshift
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26123
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1535
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19307
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 532
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23647
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1687
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg92ValfsTer29
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
reference allele: CG
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

5-840481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840481
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840481
    reference: chr 5
allele count: 4
allele frequency: 1.747030048916841e-4
allele num: 22896
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+129C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+129C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+129C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+129C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.274C>T
  hgvsp: ENSP00000427067.1:p.Arg92Cys
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+129C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2888C>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3412
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26779
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18497
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24287
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.75e1
  variant carriers: 2
hgvs: p.Arg92Cys
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

5-840482-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840482
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840482
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 23710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+128C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+128C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.273C>A
  hgvsp: ENST00000511539.1:c.273C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+128C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+128C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2889C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+128C>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 3316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3522
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27103
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3548
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24830
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1599
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro91Pro
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

5-840491-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840491
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840491
    reference: chr 5
allele count: 1
allele frequency: 3.562014675500463e-5
allele num: 28074
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.264C>T
  hgvsp: ENST00000511539.1:c.264C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2898C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+119C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+119C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+119C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+119C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+119C>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1705
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15013
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4740
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1487
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val88Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

5-840497-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840497
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840497
    reference: chr 5
allele count: 1
allele frequency: 3.185119123455217e-5
allele num: 31396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+113C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+113C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+113C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+113C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2904C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+113C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.258C>T
  hgvsp: ENST00000511539.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5377
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 871
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28227
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 522
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala86Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum

5-840500-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840500
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840500
    reference: chr 5
allele count: 1
allele frequency: 2.91970802919708e-5
allele num: 34250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+110G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+110G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.255G>C
  hgvsp: ENST00000511539.1:c.255G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2907G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+110G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+110G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+110G>C
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10863
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30941
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29249
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1640
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 902
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly85Gly
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

5-840502-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840502
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840502
    reference: chr 5
allele count: 1
allele frequency: 2.718277699249756e-5
allele num: 36788
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.253G>C
  hgvsp: ENSP00000427067.1:p.Gly85Arg
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+108G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+108G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+108G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+108G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2909G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+108G>C
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30951
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9746
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4504
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1317
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9538
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly85Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

5-840506-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840506
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840506
    reference: chr 5
allele count: 37937
allele frequency: 5.240930566684165e-1
allele num: 72386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+104G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+104G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+104G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2913G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+104G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.249G>A
  hgvsp: ENST00000511539.1:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+104G>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 2.75e1
  variant carriers: 2821
genotype depth: GenotypeDepth
  all individuals: 10176
  bin: 1.75e1
  variant carriers: 9035
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 9.75e1
  variant carriers: 578
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.75e1
  variant carriers: 445
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 3.25e1
  variant carriers: 1472
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 5.75e1
  variant carriers: 471
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 4.25e1
  variant carriers: 590
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.25e1
  variant carriers: 427
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 1.25e1
  variant carriers: 10936
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 9.25e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 7.75e1
  variant carriers: 372
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 6.75e1
  variant carriers: 421
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 5.25e1
  variant carriers: 480
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 2.5e0
  variant carriers: 803
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 8.75e1
  variant carriers: 254
genotype depth: GenotypeDepth
  all individuals: 13737
  bin: 7.5e0
  variant carriers: 7142
genotype depth: GenotypeDepth
  all individuals: 6154
  bin: 2.25e1
  variant carriers: 5409
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 836
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 424
genotype quality: GenotypeQuality
  all individuals: 879
  bin: 2.75e1
  variant carriers: 738
genotype quality: GenotypeQuality
  all individuals: 1550
  bin: 6.25e1
  variant carriers: 1059
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 1.25e1
  variant carriers: 572
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 3.25e1
  variant carriers: 872
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 7.5e0
  variant carriers: 458
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 4.75e1
  variant carriers: 777
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 6.75e1
  variant carriers: 1102
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 3.75e1
  variant carriers: 770
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 8.25e1
  variant carriers: 1077
genotype quality: GenotypeQuality
  all individuals: 9074
  bin: 2.5e0
  variant carriers: 172
hgvs: p.Thr83Thr
num of homozygotes: 2945
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

5-840507-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840507
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840507
    reference: chr 5
allele count: 1
allele frequency: 1.1819492707373e-5
allele num: 84606
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+103C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+103C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+103C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.248C>T
  hgvsp: ENSP00000427067.1:p.Thr83Met
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2914C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+103C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+103C>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7038
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5057
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10399
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12747
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3918
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5683
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9130
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3659
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5218
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3591
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr83Met
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD

5-840509-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840509
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840509
    reference: chr 5
allele count: 228
allele frequency: 2.699055330634278e-3
allele num: 84474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+101C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+101C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+101C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.246C>T
  hgvsp: ENST00000511539.1:c.246C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2916C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+101C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+101C>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 2.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 2.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 13597
  bin: 1.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 12760
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 9639
  bin: 1.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 5141
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9608
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2372
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3795
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 9.75e1
  variant carriers: 185
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2597
  bin: 5.25e1
  variant carriers: 4
hgvs: p.Pro82Pro
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum

5-840509-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840509
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840509
    reference: chr 5
allele count: 6
allele frequency: 7.102777185879679e-5
allele num: 84474
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+101C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+101C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2916C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+101C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.246C>A
  hgvsp: ENST00000511539.1:c.246C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+101C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+101C>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7842
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12760
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 9608
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3044
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 731
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5757
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3621
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Pro82Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

5-840512-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840512
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840512
    reference: chr 5
allele count: 1
allele frequency: 1.166915608663182e-5
allele num: 85696
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+98C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.243C>T
  hgvsp: ENST00000511539.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+98C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+98C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2919C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+98C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+98C>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12829
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13525
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3385
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5704
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10725
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3530
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro81Pro
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

5-840514-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840514
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840514
    reference: chr 5
allele count: 3
allele frequency: 3.4898329533293e-5
allele num: 85964
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+96C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+96C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.241C>G
  hgvsp: ENSP00000427067.1:p.Pro81Ala
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+96C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+96C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2921C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+96C>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10650
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13385
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12926
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7085
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2736
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 762
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3342
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1741
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro81Ala
num of homozygotes: 0
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD

5-840525-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840525
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840525
    reference: chr 5
allele count: 1
allele frequency: 1.097743040309124e-5
allele num: 91096
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2932C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.230C>G
  hgvsp: ENSP00000427067.1:p.Pro77Arg
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+85C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+85C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+85C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+85C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+85C>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6851
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3619
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22558
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7555
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4872
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1671
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2573
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3418
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro77Arg
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

5-840531-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840531
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840531
    reference: chr 5
allele count: 2
allele frequency: 2.08420175072947e-5
allele num: 95960
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+79A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+79A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2938A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.224A>G
  hgvsp: ENSP00000427067.1:p.Tyr75Cys
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+79A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+79A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+79A>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27242
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4675
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11066
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7526
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5480
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1070
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1792
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr75Cys
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD

http://identifiers.org/exac.variant/5-840532-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840532
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840532
    reference: chr 5
allele count: 1
allele frequency: 1.03299382269694e-5
allele num: 96806
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+78T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.223T>G
  hgvsp: ENSP00000427067.1:p.Tyr75Asp
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+78T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2939T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+78T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+78T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+78T>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10739
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4273
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3966
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10451
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 746
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr75Asp
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

5-840535-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840535
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840535
    reference: chr 5
allele count: 46
allele frequency: 4.633453534519229e-4
allele num: 99278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+75G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+75G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+75G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.220G>C
  hgvsp: ENSP00000427067.1:p.Glu74Gln
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2942G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+75G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+75G>C
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 29764
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9456
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5801
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1910
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27908
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 9.75e1
  variant carriers: 45
hgvs: p.Glu74Gln
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

5-840535-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840535
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840535
    reference: chr 5
allele count: 2
allele frequency: 2.01454501500836e-5
allele num: 99278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2942G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+75G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+75G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.220G>A
  hgvsp: ENSP00000427067.1:p.Glu74Lys
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+75G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+75G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+75G>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4131
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1590
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8003
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9674
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2909
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9456
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1473
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1001
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1361
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Glu74Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-840543-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840543
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840543
    reference: chr 5
allele count: 2
allele frequency: 1.882246649600964e-5
allele num: 106256
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+67C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2950C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.212C>A
  hgvsp: ENSP00000427067.1:p.Pro71His
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+67C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+67C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+67C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+67C>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31464
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro71His
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

5-840546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840546
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840546
    reference: chr 5
allele count: 6
allele frequency: 5.52455665432849e-5
allele num: 108606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+64C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.209C>T
  hgvsp: ENSP00000427067.1:p.Thr70Ile
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+64C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2953C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+64C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+64C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+64C>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34096
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6942
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr70Ile
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD

5-840546-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840546
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840546
    reference: chr 5
allele count: 1
allele frequency: 9.207594423880816e-6
allele num: 108606
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+64C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.209C>G
  hgvsp: ENSP00000427067.1:p.Thr70Arg
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+64C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+64C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+64C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2953C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+64C>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5716
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4882
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 944
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3091
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6942
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr70Arg
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

5-840547-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840547
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840547
    reference: chr 5
allele count: 1
allele frequency: 9.160193463285944e-6
allele num: 109168
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+63A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+63A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.208A>G
  hgvsp: ENSP00000427067.1:p.Thr70Ala
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+63A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2954A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+63A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+63A>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5407
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4954
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6956
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32169
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr70Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-840548-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840548
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840548
    reference: chr 5
allele count: 1
allele frequency: 9.086283346659882e-6
allele num: 110056
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.207T>G
  hgvsp: ENST00000511539.1:c.207T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2955T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+62T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+62T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+62T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+62T>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+62T>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5041
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4998
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3158
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3049
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32670
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu69Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-840552-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840552
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840552
    reference: chr 5
allele count: 1
allele frequency: 8.91885624587503e-6
allele num: 112122
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.203A>G
  hgvsp: ENSP00000427067.1:p.His68Arg
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+58A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+58A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+58A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2959A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+58A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+58A>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4128
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9708
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2446
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3237
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His68Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-840554-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840554
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840554
    reference: chr 5
allele count: 1
allele frequency: 8.841576629944652e-6
allele num: 113102
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+56T>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.201T>C
  hgvsp: ENST00000511539.1:c.201T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+56T>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+56T>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2961T>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+56T>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+56T>C
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3691
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2544
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3293
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala67Ala
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

5-840559-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840559
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840559
    reference: chr 5
allele count: 1
allele frequency: 8.692326414241508e-6
allele num: 115044
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+51G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+51G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.196G>C
  hgvsp: ENSP00000427067.1:p.Ala66Pro
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+51G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+51G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2966G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+51G>C
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5480
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10058
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34672
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3392
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2826
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ala66Pro
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

5-840560-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840560
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840560
    reference: chr 5
allele count: 1
allele frequency: 8.671071571024747e-6
allele num: 115326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+50A>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2967A>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+50A>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.195A>T
  hgvsp: ENSP00000427067.1:p.Arg65Ser
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+50A>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+50A>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+50A>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5498
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2716
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7436
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3404
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Arg65Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

5-840561-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840561
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840561
    reference: chr 5
allele count: 40
allele frequency: 3.462364102208988e-4
allele num: 115528
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+49G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+49G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+49G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.194G>A
  hgvsp: ENSP00000427067.1:p.Arg65Lys
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+49G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2968G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+49G>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36978
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10075
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3203
  bin: 9.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg65Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

5-840563-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840563
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840563
    reference: chr 5
allele count: 1
allele frequency: 8.612967684145249e-6
allele num: 116104
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+47C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+47C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2970C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+47C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+47C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.192C>T
  hgvsp: ENST00000511539.1:c.192C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+47C>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1390
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35165
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7502
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val64Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

5-840563-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840563
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840563
    reference: chr 5
allele count: 3
allele frequency: 2.583890305243575e-5
allele num: 116104
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+47C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+47C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+47C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.192C>G
  hgvsp: ENST00000511539.1:c.192C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2970C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+47C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+47C>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3227
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2616
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val64Val
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/5-840568-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840568
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840568
    reference: chr 5
allele count: 1
allele frequency: 8.55636936135259e-6
allele num: 116872
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+42G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.187G>T
  hgvsp: ENSP00000427067.1:p.Val63Leu
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+42G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+42G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2975G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+42G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+42G>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2041
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val63Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

5-840569-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840569
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840569
    reference: chr 5
allele count: 1
allele frequency: 8.549200649739249e-6
allele num: 116970
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+41G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+41G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+41G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+41G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.186G>C
  hgvsp: ENSP00000427067.1:p.Trp62Cys
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+41G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2976G>C
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Trp62Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/5-840569-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840569
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840569
    reference: chr 5
allele count: 1
allele frequency: 8.549200649739249e-6
allele num: 116970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+41G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+41G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.186G>T
  hgvsp: ENSP00000427067.1:p.Trp62Cys
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+41G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2976G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+41G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+41G>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7591
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp62Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

5-840570-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840570
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840570
    reference: chr 5
allele count: 2
allele frequency: 1.708321232724601e-5
allele num: 117074
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.185G>C
  hgvsp: ENSP00000427067.1:p.Trp62Ser
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+40G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+40G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+40G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2977G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+40G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+40G>C
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10292
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2679
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2673
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Trp62Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD

5-840573-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840573
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840573
    reference: chr 5
allele count: 187
allele frequency: 1.593931128537334e-3
allele num: 117320
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+37G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.182G>A
  hgvsp: ENSP00000427067.1:p.Gly61Asp
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2980G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+37G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+37G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+37G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+37G>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 10315
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 9.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 37254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5753
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1918
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 3453
  bin: 9.75e1
  variant carriers: 186
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7609
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3488
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2685
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1835
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly61Asp
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD

5-840574-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840574
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840574
    reference: chr 5
allele count: 1
allele frequency: 8.515421428206482e-6
allele num: 117434
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+36G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.181G>C
  hgvsp: ENSP00000427067.1:p.Gly61Arg
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2981G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+36G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+36G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+36G>C
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+36G>C
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10329
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37300
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7633
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3441
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2694
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1798
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly61Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

5-840575-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840575
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840575
    reference: chr 5
allele count: 5004
allele frequency: 4.247084585221775e-2
allele num: 117822
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+35A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+35A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2982A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+35A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.180A>G
  hgvsp: ENST00000511539.1:c.180A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+35A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+35A>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 9.25e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 8.25e1
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 34057
  bin: 2.25e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 3.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 7.5e0
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 3.75e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.25e1
  variant carriers: 374
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 5.75e1
  variant carriers: 372
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 7.75e1
  variant carriers: 234
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.75e1
  variant carriers: 353
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 4.25e1
  variant carriers: 349
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 9.75e1
  variant carriers: 725
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 6.25e1
  variant carriers: 331
genotype depth: GenotypeDepth
  all individuals: 9931
  bin: 2.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.25e1
  variant carriers: 278
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3292
  bin: 7.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2549
  bin: 8.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 7119
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 9.25e1
  variant carriers: 14
hgvs: p.Gln60Gln
num of homozygotes: 74
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum

5-840576-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840576
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840576
    reference: chr 5
allele count: 2
allele frequency: 1.696554298220315e-5
allele num: 117886
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2983A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+34A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+34A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+34A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.179A>G
  hgvsp: ENSP00000427067.1:p.Gln60Arg
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+34A>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+34A>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34084
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7289
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6618
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2667
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln60Arg
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

5-840577-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840577
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840577
    reference: chr 5
allele count: 3
allele frequency: 2.543709406637386e-5
allele num: 117938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2984C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+33C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+33C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.178C>A
  hgvsp: ENSP00000427067.1:p.Gln60Lys
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+33C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+33C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+33C>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5888
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34040
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6623
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gln60Lys
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

5-840578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840578
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840578
    reference: chr 5
allele count: 1
allele frequency: 8.470986869970351e-6
allele num: 118050
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+32C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2985C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.177C>T
  hgvsp: ENST00000511539.1:c.177C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+32C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+32C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+32C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+32C>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32515
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro59Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

5-840578-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840578
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840578
    reference: chr 5
allele count: 1
allele frequency: 8.470986869970351e-6
allele num: 118050
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2985C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+32C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.177C>G
  hgvsp: ENST00000511539.1:c.177C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+32C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+32C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+32C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+32C>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5896
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1137
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro59Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

5-840579-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840579
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840579
    reference: chr 5
allele count: 21
allele frequency: 1.777251184834123e-4
allele num: 118160
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2986C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+31C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+31C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.176C>T
  hgvsp: ENSP00000427067.1:p.Pro59Leu
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+31C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+31C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+31C>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34064
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro59Leu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

5-840581-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840581
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840581
    reference: chr 5
allele count: 1
allele frequency: 8.452942469273554e-6
allele num: 118302
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.174C>A
  hgvsp: ENST00000511539.1:c.174C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+29C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+29C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+29C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+29C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2988C>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+29C>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5919
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34088
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7311
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser58Ser
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

5-840583-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840583
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840583
    reference: chr 5
allele count: 1
allele frequency: 8.443521286117163e-6
allele num: 118434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+27T>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+27T>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2990T>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+27T>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.172T>A
  hgvsp: ENSP00000427067.1:p.Ser58Thr
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+27T>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+27T>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2141
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7324
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3444
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2656
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6645
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser58Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-840584-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840584
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840585
    reference: chr 5
allele count: 12
allele frequency: 1.013137009894971e-4
allele num: 118444
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2992dupG
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.170dupG
  hgvsp: ENSP00000427067.1:p.Ser58IlefsTer17
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+25dupG
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+25dupG
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+25dupG
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+25dupG
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+25dupG
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10289
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 619
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34107
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3446
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7340
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1148
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser58IlefsTer17
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD

5-840585-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840585
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840585
    reference: chr 5
allele count: 715
allele frequency: 6.07115564235374e-3
allele num: 117770
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+25G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+25G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2992G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+25G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.170G>A
  hgvsp: ENSP00000427067.1:p.Arg57Gln
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+25G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+25G>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 9.75e1
  variant carriers: 212
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 10196
  bin: 2.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33423
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.5e0
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2651
  bin: 7.25e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 3408
  bin: 7.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 8.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 2675
  bin: 8.25e1
  variant carriers: 13
hgvs: p.Arg57Gln
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

5-840585-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840585
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840584
    reference: chr 5
allele count: 1
allele frequency: 8.491126772522713e-6
allele num: 117770
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+24delC
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+24delC
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+24delC
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.169delC
  hgvsp: ENSP00000427067.1:p.Arg57AspfsTer64
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+24delC
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2993delC
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+24delC
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2167
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10196
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 245
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7242
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg57AspfsTer64
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CG
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

5-840586-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840586
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840586
    reference: chr 5
allele count: 518
allele frequency: 4.36181141480995e-3
allele num: 118758
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+24C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+24C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+24C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2993C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+24C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+24C>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.169C>T
  hgvsp: ENSP00000427067.1:p.Arg57Ter
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 6.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 8.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 1.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 8.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 2179
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 33231
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5967
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10234
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 7.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 6.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 9.75e1
  variant carriers: 185
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 7.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 4.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7689
  bin: 9.75e1
  variant carriers: 509
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg57Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

5-840587-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840587
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840587
    reference: chr 5
allele count: 1
allele frequency: 8.4088730428348e-6
allele num: 118922
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+23C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+23C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+23C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2994C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.168C>G
  hgvsp: ENST00000511539.1:c.168C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+23C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+23C>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10294
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2660
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7300
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro56Pro
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

5-840590-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840590
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840590
    reference: chr 5
allele count: 1
allele frequency: 8.388839487945237e-6
allele num: 119206
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.165C>G
  hgvsp: ENSP00000427067.1:p.Ser55Arg
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+20C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2997C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+20C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+20C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+20C>G
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+20C>G
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser55Arg
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff

5-840590-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840590
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840589
    reference: chr 5
allele count: 4
allele frequency: 3.355535795178095e-5
allele num: 119206
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+19delG
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.164delG
  hgvsp: ENSP00000427067.1:p.Ser55ThrfsTer66
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+19delG
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+19delG
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+19delG
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2998delG
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+19delG
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2197
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2664
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1147
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser55ThrfsTer66
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: GC
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

5-840591-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840591
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840591
    reference: chr 5
allele count: 4
allele frequency: 3.354353951428955e-5
allele num: 119248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+19G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+19G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.164G>A
  hgvsp: ENSP00000427067.1:p.Ser55Asn
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+19G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2998G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+19G>A
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+19G>A
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 33394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3418
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7317
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7608
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2719
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser55Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/5-840591-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 840591
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 840591
    reference: chr 5
allele count: 1
allele frequency: 8.385884878572387e-6
allele num: 119248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000427067
  ensembl transcript: ENST00000511539
  gene symbol: ZDHHC11
  hgvsc: ENST00000511539.1:c.164G>T
  hgvsp: ENSP00000427067.1:p.Ser55Ile
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000397719
  ensembl transcript: ENST00000424784
  gene symbol: ZDHHC11
  hgvsc: ENST00000424784.2:c.784+19G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000426873
  ensembl transcript: ENST00000511193
  gene symbol: ZDHHC11
  hgvsc: ENST00000511193.1:c.109+19G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000283441
  ensembl transcript: ENST00000283441
  gene symbol: ZDHHC11
  hgvsc: ENST00000283441.8:c.784+19G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000508951
  gene symbol: ZDHHC11
  hgvsc: ENST00000508951.1:n.66-2998G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl transcript: ENST00000503758
  gene symbol: ZDHHC11
  hgvsc: ENST00000503758.2:n.1849+19G>T
  variant of: http://identifiers.org/hgnc/19158
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000188818
  ensembl protein: ENSP00000423817
  ensembl transcript: ENST00000507800
  gene symbol: ZDHHC11
  hgvsc: ENST00000507800.1:c.367+19G>T
  variant of: http://identifiers.org/hgnc/19158
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser55Ile
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 334
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1777
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 443
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.056524035921817e-3
allele num: 3786
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7320
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.689e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.59e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.199e0

FS
type: SiteQuality
SIO_000300: 3.567e0

DP
type: SiteQuality
SIO_000300: 2.48327e5

MQRankSum
type: SiteQuality
SIO_000300: 5.77e-1

QD
type: SiteQuality
SIO_000300: 3.42e0

VQSLOD
type: SiteQuality
SIO_000300: -5.374e-1

GenotypeQuality
all individuals: 75
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1799
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.581311306143521e-4
allele num: 3874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.902e0

QD
type: SiteQuality
SIO_000300: 5.36e0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.217e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.85e-1

FS
type: SiteQuality
SIO_000300: 6.3e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.15e-2

DP
type: SiteQuality
SIO_000300: 2.58323e5

MQ
type: SiteQuality
SIO_000300: 4.427e1

GenotypeQuality
all individuals: 562
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2048
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2124
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 40
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.33155792276964e-4
allele num: 7510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.64386e5

MQ
type: SiteQuality
SIO_000300: 4.778e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.811e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.111e0

QD
type: SiteQuality
SIO_000300: 3.87e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.19e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.54e0

GenotypeQuality
all individuals: 574
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 103
bin: 3.75e1
variant carriers: 10

GenotypeQuality
all individuals: 416
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 256
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 470
bin: 1.75e1
variant carriers: 7

GenotypeQuality
all individuals: 23557
bin: 7.5e0
variant carriers: 3

GenotypeQuality
all individuals: 329
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1988
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 5

African
type: Population
allele count: 17
allele frequency: 3.090909090909091e-2
allele num: 550
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.629629629629629e-3
allele num: 216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 27
allele frequency: 7.158006362672322e-3
allele num: 3772
num of homozygotes: 0

South Asian
type: Population
allele count: 56
allele frequency: 7.696536558548653e-3
allele num: 7276
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.470588235294118e-2
allele num: 136
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 1.162790697674419e-2
allele num: 258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.380952380952381e-2
allele num: 42
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.887e0

FS
type: SiteQuality
SIO_000300: 9.78e-1

DP
type: SiteQuality
SIO_000300: 2.79787e5

MQ
type: SiteQuality
SIO_000300: 4.537e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.89e-1

QD
type: SiteQuality
SIO_000300: 1.67e0

VQSLOD
type: SiteQuality
SIO_000300: 8.599999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.88e-2

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25892
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.23728813559322e-3
allele num: 236
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3986
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.84846e5

FS
type: SiteQuality
SIO_000300: 3.082e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.15e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.317e0

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

QD
type: SiteQuality
SIO_000300: 3.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 4.606e1

GenotypeQuality
all individuals: 723
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.508780732563974e-4
allele num: 3986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.51e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.15e-2

FS
type: SiteQuality
SIO_000300: 3.082e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 2.84846e5

QD
type: SiteQuality
SIO_000300: 3.69e0

VQSLOD
type: SiteQuality
SIO_000300: -4.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.317e0

MQ
type: SiteQuality
SIO_000300: 4.606e1

GenotypeQuality
all individuals: 105
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1893
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2881
bin: 2.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 9.708737864077669e-3
allele num: 618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4028
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7622
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.35e-1

QD
type: SiteQuality
SIO_000300: 8.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 8.803000000000001e0

VQSLOD
type: SiteQuality
SIO_000300: 2.8e-2

DP
type: SiteQuality
SIO_000300: 2.92631e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.13e-2

MQ
type: SiteQuality
SIO_000300: 5.008e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30417
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1457
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 756
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.269357705001269e-4
allele num: 7878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4776
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.244e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.87e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.97e-1

FS
type: SiteQuality
SIO_000300: 3.509e0

QD
type: SiteQuality
SIO_000300: 8.2e-1

MQ
type: SiteQuality
SIO_000300: 3.644e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e0

DP
type: SiteQuality
SIO_000300: 3.65363e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.51e-1

GenotypeQuality
all individuals: 59
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28697
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 770
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.31578947368421e-3
allele num: 760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5328
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7972
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.179e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.103e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.34e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.82e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-1

FS
type: SiteQuality
SIO_000300: 4.512e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

QD
type: SiteQuality
SIO_000300: 1.49e0

DP
type: SiteQuality
SIO_000300: 3.94713e5

GenotypeQuality
all individuals: 818
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 847
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23612
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19647
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 1.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 968
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.362026695723236e-4
allele num: 7342
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.95e-2

DP
type: SiteQuality
SIO_000300: 4.62313e5

VQSLOD
type: SiteQuality
SIO_000300: -2.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.568e0

QD
type: SiteQuality
SIO_000300: 3.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.133e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 4.578e1

GenotypeQuality
all individuals: 108
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 518
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23348
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 806
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7450
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.030927835051546e-3
allele num: 970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 516
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.17813383600377e-4
allele num: 8488
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

QD
type: SiteQuality
SIO_000300: 2.78e0

VQSLOD
type: SiteQuality
SIO_000300: -2.918e0

MQRankSum
type: SiteQuality
SIO_000300: -4.57e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.92e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.87e-1

MQ
type: SiteQuality
SIO_000300: 3.949e1

DP
type: SiteQuality
SIO_000300: 4.65609e5

GenotypeQuality
all individuals: 344
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1252
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 390
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1913
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 131
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.033057851239669e-3
allele num: 968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 468
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.513703443429375e-4
allele num: 8538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.3e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.584e0

QD
type: SiteQuality
SIO_000300: 3.19e0

MQRankSum
type: SiteQuality
SIO_000300: -9.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.69e-1

DP
type: SiteQuality
SIO_000300: 4.76044e5

FS
type: SiteQuality
SIO_000300: 1.005e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.93e-2

MQ
type: SiteQuality
SIO_000300: 3.838e1

GenotypeQuality
all individuals: 20561
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1472
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 924
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.754385964912281e-3
allele num: 570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.776e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.83e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.22e0

MQ
type: SiteQuality
SIO_000300: 4.195e1

MQRankSum
type: SiteQuality
SIO_000300: -1.294e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.82e-1

DP
type: SiteQuality
SIO_000300: 4.85067e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

GenotypeQuality
all individuals: 2727
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2216
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 6.75e1
variant carriers: 4

GenotypeQuality
all individuals: 885
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1669
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 398
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 479
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 20561
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 9.75e1
variant carriers: 10

European (Non-Finnish)
type: Population
allele count: 22
allele frequency: 2.67379679144385e-3
allele num: 8228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.872659176029963e-3
allele num: 534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 570
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.082251082251082e-3
allele num: 924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1036
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.83e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.294e0

VQSLOD
type: SiteQuality
SIO_000300: -1.776e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.82e-1

DP
type: SiteQuality
SIO_000300: 4.85067e5

MQ
type: SiteQuality
SIO_000300: 4.195e1

QD
type: SiteQuality
SIO_000300: 6.22e0

GenotypeQuality
all individuals: 1463
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21261
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21557
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2887
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 853
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1191
bin: 1.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8678
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1020
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1078
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8732
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.551e0

DP
type: SiteQuality
SIO_000300: 4.91334e5

ClippingRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.48e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQ
type: SiteQuality
SIO_000300: 3.066e1

QD
type: SiteQuality
SIO_000300: 6.41e0

GenotypeQuality
all individuals: 1465
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8828
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.110864252388358e-4
allele num: 9002
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.488e0

DP
type: SiteQuality
SIO_000300: 5.01829e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.56e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQ
type: SiteQuality
SIO_000300: 4.421e1

QD
type: SiteQuality
SIO_000300: 4.39e0

GenotypeQuality
all individuals: 407
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22455
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3010
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1202
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1063
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9002
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 9.242144177449168e-4
allele num: 1082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 618
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.56e-2

QD
type: SiteQuality
SIO_000300: 4.39e0

DP
type: SiteQuality
SIO_000300: 5.01829e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

MQ
type: SiteQuality
SIO_000300: 4.421e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.488e0

GenotypeQuality
all individuals: 532
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 8.756567425569177e-4
allele num: 1142
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.92e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.318e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

DP
type: SiteQuality
SIO_000300: 5.14954e5

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

QD
type: SiteQuality
SIO_000300: 6.54e0

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 519
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23647
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1103
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 8.726003490401396e-4
allele num: 1146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.061796559779146e-4
allele num: 9418
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.54e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.92e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.14954e5

MQ
type: SiteQuality
SIO_000300: 4.318e1

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1049
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8904
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1142
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-2

DP
type: SiteQuality
SIO_000300: 5.14954e5

MQ
type: SiteQuality
SIO_000300: 4.318e1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.92e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.54e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.54e0

GenotypeQuality
all individuals: 1713
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1090
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.215820961666297e-4
allele num: 9026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.032520325203252e-4
allele num: 9840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.878e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.889999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.62e-1

QD
type: SiteQuality
SIO_000300: 5.8e0

DP
type: SiteQuality
SIO_000300: 5.26088e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.04e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

FS
type: SiteQuality
SIO_000300: 4.361e0

VQSLOD
type: SiteQuality
SIO_000300: -2.765e0

GenotypeQuality
all individuals: 185
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18059
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 903
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1468
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1228
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 760
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-2

QD
type: SiteQuality
SIO_000300: 8.24e0

MQ
type: SiteQuality
SIO_000300: 4.481e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.703e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

DP
type: SiteQuality
SIO_000300: 5.32108e5

GenotypeQuality
all individuals: 1470
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4588
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14478
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GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
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variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.67341927562922e-5
allele num: 13032
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1036
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1022
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.599e0

MQ
type: SiteQuality
SIO_000300: 4.712e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.18e-2

QD
type: SiteQuality
SIO_000300: 5.91e0

DP
type: SiteQuality
SIO_000300: 5.81982e5

BaseQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

GenotypeQuality
all individuals: 2001
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1098
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 6.645401382243488e-5
allele num: 15048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1248
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1248
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.2093e5

VQSLOD
type: SiteQuality
SIO_000300: -1.972e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.72e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.78e-1

MQ
type: SiteQuality
SIO_000300: 4.696e1

QD
type: SiteQuality
SIO_000300: 3.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

GenotypeQuality
all individuals: 10602
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1474
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6612
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1217
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 541
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variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.98014591556034e-5
allele num: 16722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1418
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1854
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

MQ
type: SiteQuality
SIO_000300: 4.689e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.333e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.08e-1

DP
type: SiteQuality
SIO_000300: 6.52777e5

VQSLOD
type: SiteQuality
SIO_000300: -2.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.067e0

QD
type: SiteQuality
SIO_000300: 3.11e0

GenotypeQuality
all individuals: 29571
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1667
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1538
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.485463521667581e-5
allele num: 18230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.31e0

VQSLOD
type: SiteQuality
SIO_000300: -1.578e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

DP
type: SiteQuality
SIO_000300: 6.78716e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.11e-2

MQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQ
type: SiteQuality
SIO_000300: 4.951e1

GenotypeQuality
all individuals: 935
bin: 8.75e1
variant carriers: 931

GenotypeQuality
all individuals: 986
bin: 5.75e1
variant carriers: 956

GenotypeQuality
all individuals: 3603
bin: 2.25e1
variant carriers: 1025

GenotypeQuality
all individuals: 1028
bin: 9.25e1
variant carriers: 1026

GenotypeQuality
all individuals: 982
bin: 5.25e1
variant carriers: 950

GenotypeQuality
all individuals: 715
bin: 4.25e1
variant carriers: 671

GenotypeQuality
all individuals: 1299
bin: 1.75e1
variant carriers: 917

GenotypeQuality
all individuals: 1053
bin: 7.75e1
variant carriers: 1038

GenotypeQuality
all individuals: 1036
bin: 7.25e1
variant carriers: 1021

GenotypeQuality
all individuals: 27294
bin: 9.75e1
variant carriers: 27290

South Asian
type: Population
allele count: 6853
allele frequency: 4.965942028985507e-1
allele num: 13800
num of homozygotes: 382

Latino
type: Population
allele count: 3379
allele frequency: 5.363492063492064e-1
allele num: 6300
num of homozygotes: 256

Other
type: Population
allele count: 286
allele frequency: 5.070921985815603e-1
allele num: 564
num of homozygotes: 12

European (Non-Finnish)
type: Population
allele count: 18232
allele frequency: 4.905822839306856e-1
allele num: 37164
num of homozygotes: 342

European (Finnish)
type: Population
allele count: 1951
allele frequency: 5.046559751681324e-1
allele num: 3866
num of homozygotes: 46

African
type: Population
allele count: 4020
allele frequency: 7.954095765730115e-1
allele num: 5054
num of homozygotes: 1500

East Asian
type: Population
allele count: 3216
allele frequency: 5.70415040794608e-1
allele num: 5638
num of homozygotes: 407

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

FS
type: SiteQuality
SIO_000300: 8.224e0

MQRankSum
type: SiteQuality
SIO_000300: -2.103e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.875e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.21e-1

DP
type: SiteQuality
SIO_000300: 1.105994e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.256e0

VQSLOD
type: SiteQuality
SIO_000300: 4.501e1

MQ
type: SiteQuality
SIO_000300: 4.675e1

QD
type: SiteQuality
SIO_000300: 1.279e1

GenotypeQuality
all individuals: 3306
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3001
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variant carriers: 0

GenotypeQuality
all individuals: 5822
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variant carriers: 0

GenotypeQuality
all individuals: 1400
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variant carriers: 0

GenotypeQuality
all individuals: 3033
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variant carriers: 0

GenotypeQuality
all individuals: 534
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variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2718
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45056
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6340
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.799208348326736e-4
allele num: 5558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14752
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.18e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.72e-1

MQ
type: SiteQuality
SIO_000300: 5.13e1

VQSLOD
type: SiteQuality
SIO_000300: -1.342e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.000517e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

QD
type: SiteQuality
SIO_000300: 8.68e0

GenotypeQuality
all individuals: 1402
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 3621
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1635
bin: 7.75e1
variant carriers: 5

GenotypeQuality
all individuals: 741
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3595
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5757
bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1237
bin: 8.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2764
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6598
bin: 6.25e1
variant carriers: 9

GenotypeQuality
all individuals: 731
bin: 9.25e1
variant carriers: 7

African
type: Population
allele count: 6
allele frequency: 1.08499095840868e-3
allele num: 5530
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.677376171352075e-4
allele num: 7470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 14
allele frequency: 2.946127946127946e-3
allele num: 4752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 201
allele frequency: 4.465277469231794e-3
allele num: 45014
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 6.361323155216285e-4
allele num: 6288
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.5625e-3
allele num: 640
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.298e0

DP
type: SiteQuality
SIO_000300: 1.008351e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.145e1

QD
type: SiteQuality
SIO_000300: 7.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

GenotypeQuality
all individuals: 2372
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3795
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2764
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5141
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1275
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1635
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variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.706359945872801e-4
allele num: 14780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45014
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4752
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5530
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.338688085676038e-4
allele num: 7470
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.5625e-3
allele num: 640
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.008351e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

VQSLOD
type: SiteQuality
SIO_000300: -1.298e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.85e-2

MQ
type: SiteQuality
SIO_000300: 5.145e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.0e0

QD
type: SiteQuality
SIO_000300: 7.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeQuality
all individuals: 1704
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5156
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2329
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1313
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variant carriers: 0

GenotypeQuality
all individuals: 3228
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variant carriers: 0

GenotypeQuality
all individuals: 8911
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GenotypeQuality
all individuals: 2734
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variant carriers: 2

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14858
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.314405888538381e-4
allele num: 7608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

DP
type: SiteQuality
SIO_000300: 1.022749e6

VQSLOD
type: SiteQuality
SIO_000300: -1.545e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.22e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 10222
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5626
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 2.175994429454261e-5
allele num: 45956
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 1.34661998384056e-4
allele num: 14852
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -4.3e-3

BaseQRankSum
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SIO_000300: 1.54e0

MQRankSum
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DP
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ClippingRankSum
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.435e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.492e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

Latino
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allele frequency: 1.214771622934888e-4
allele num: 8232
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 48890
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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FS
type: SiteQuality
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MQRankSum
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QD
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MQ
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SIO_000300: 4.693e1

BaseQRankSum
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SIO_000300: -1.217e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 2
allele frequency: 2.802690582959641e-4
allele num: 7136
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 7036
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 51426
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8912
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5302
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.04e-1

InbreedingCoeff
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SIO_000300: -3.0e-3

BaseQRankSum
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MQRankSum
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SIO_000300: 2.07e0

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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DP
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SIO_000300: 1.246569e6

VQSLOD
type: SiteQuality
SIO_000300: -2.075e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.35e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 51864
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East Asian
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allele frequency: 1.385809312638581e-4
allele num: 7216
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15468
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Latino
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

FS
type: SiteQuality
SIO_000300: 3.998e0

BaseQRankSum
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SIO_000300: -1.203e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
SIO_000300: 3.3e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

DP
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SIO_000300: 1.258467e6

VQSLOD
type: SiteQuality
SIO_000300: -1.684e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.41e-1

MQ
type: SiteQuality
SIO_000300: 5.208e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 742
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Latino
type: Population
allele count: 1
allele frequency: 1.067463706233988e-4
allele num: 9368
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 45
allele frequency: 5.995203836930456e-3
allele num: 7506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 53182
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.44e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.34e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQ
type: SiteQuality
SIO_000300: 5.008e1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.844e-1

DP
type: SiteQuality
SIO_000300: 1.291099e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.760670903689218e-5
allele num: 53182
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.008e1

DP
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VQSLOD
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FS
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 7.34e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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East Asian
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Other
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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ReadPosRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16066
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Other
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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ClippingRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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MQRankSum
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FS
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InbreedingCoeff
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QD
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DP
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Latino
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European (Non-Finnish)
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South Asian
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European (Finnish)
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Other
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FS
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MQ
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QD
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ReadPosRankSum
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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Latino
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Other
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South Asian
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European (Finnish)
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East Asian
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InbreedingCoeff
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FS
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MQ
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QD
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DP
type: SiteQuality
SIO_000300: 1.403433e6

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.68e0

VQSLOD
type: SiteQuality
SIO_000300: -2.508e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.929999999999999e-1

GenotypeQuality
all individuals: 5015
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1219
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7085
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 965
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.685942610513538e-5
allele num: 59314
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16152
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6032
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.563e0

QD
type: SiteQuality
SIO_000300: 9.3e-1

FS
type: SiteQuality
SIO_000300: 1.4004e1

DP
type: SiteQuality
SIO_000300: 1.411887e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.39e-1

MQ
type: SiteQuality
SIO_000300: 5.066e1

VQSLOD
type: SiteQuality
SIO_000300: -3.358e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 5.94e-1

GenotypeQuality
all individuals: 1267
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4074
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3077
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33467
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6146
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8190
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.056330374932077e-5
allele num: 11042
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

DP
type: SiteQuality
SIO_000300: 1.432867e6

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

VQSLOD
type: SiteQuality
SIO_000300: -1.578e0

MQ
type: SiteQuality
SIO_000300: 5.104e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 1295
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 376
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1009
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3104
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6216
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.632386549134835e-5
allele num: 61260
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8252
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16284
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.891e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
SIO_000300: 1.443386e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.07e-1

MQ
type: SiteQuality
SIO_000300: 5.631e1

QD
type: SiteQuality
SIO_000300: 2.7e0

GenotypeQuality
all individuals: 3154
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2594
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variant carriers: 0

GenotypeQuality
all individuals: 2585
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.598874392427731e-5
allele num: 62544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11294
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.448e0

DP
type: SiteQuality
SIO_000300: 1.464501e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.84e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

QD
type: SiteQuality
SIO_000300: 4.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.84e-1

MQ
type: SiteQuality
SIO_000300: 5.589e1

GenotypeQuality
all individuals: 34874
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 295
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3173
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variant carriers: 1

GenotypeQuality
all individuals: 1379
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variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.077354018530489e-4
allele num: 9282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6394
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62744
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.54e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.33e0

MQ
type: SiteQuality
SIO_000300: 4.541e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.175e0

QD
type: SiteQuality
SIO_000300: 3.86e0

DP
type: SiteQuality
SIO_000300: 1.467449e6

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 175
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variant carriers: 0

GenotypeQuality
all individuals: 2604
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 287
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 7445
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3397
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variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1381
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6402
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.830801836806782e-5
allele num: 11324
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

African
type: Population
allele count: 39
allele frequency: 4.198966408268734e-3
allele num: 9288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.834e1

MQRankSum
type: SiteQuality
SIO_000300: -2.129e0

DP
type: SiteQuality
SIO_000300: 1.472902e6

VQSLOD
type: SiteQuality
SIO_000300: -9.612000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.132e0

QD
type: SiteQuality
SIO_000300: 2.0e0

GenotypeQuality
all individuals: 3227
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 155
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 3415
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.15473441108545e-3
allele num: 866
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.479293e6

VQSLOD
type: SiteQuality
SIO_000300: -1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.678e0

FS
type: SiteQuality
SIO_000300: 6.828e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

QD
type: SiteQuality
SIO_000300: 5.21e0

MQ
type: SiteQuality
SIO_000300: 5.487e1

GenotypeQuality
all individuals: 7502
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 35165
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variant carriers: 0

GenotypeQuality
all individuals: 1390
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GenotypeQuality
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GenotypeQuality
all individuals: 81
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
all individuals: 2379
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.744583267436344e-5
allele num: 63230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.62e0

VQSLOD
type: SiteQuality
SIO_000300: -1.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

DP
type: SiteQuality
SIO_000300: 1.479293e6

MQ
type: SiteQuality
SIO_000300: 5.487e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.678e0

FS
type: SiteQuality
SIO_000300: 6.828e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e-1

QD
type: SiteQuality
SIO_000300: 5.21e0

GenotypeQuality
all individuals: 35277
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3260
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 56
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 7589
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.753501400560224e-5
allele num: 11424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.15e0

VQSLOD
type: SiteQuality
SIO_000300: -3.978e0

MQ
type: SiteQuality
SIO_000300: 5.133e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.457e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 1.487912e6

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 3.25e1
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GenotypeQuality
all individuals: 3261
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GenotypeQuality
all individuals: 66
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GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
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GenotypeQuality
all individuals: 7591
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GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 35309
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63796
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.08198515995621e-5
allele num: 16442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.525e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQ
type: SiteQuality
SIO_000300: 5.329e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

FS
type: SiteQuality
SIO_000300: 7.86e-1

DP
type: SiteQuality
SIO_000300: 1.489562e6

MQRankSum
type: SiteQuality
SIO_000300: -2.806e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

QD
type: SiteQuality
SIO_000300: 3.3e0

GenotypeQuality
all individuals: 1421
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2665
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3261
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3474
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567496394758292e-5
allele num: 63796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.99e-1

MQ
type: SiteQuality
SIO_000300: 5.329e1

QD
type: SiteQuality
SIO_000300: 3.3e0

FS
type: SiteQuality
SIO_000300: 7.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.806e0

VQSLOD
type: SiteQuality
SIO_000300: -2.525e0

DP
type: SiteQuality
SIO_000300: 1.489562e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

GenotypeQuality
all individuals: 223
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 1104
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variant carriers: 0

GenotypeQuality
all individuals: 7602
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.130772361541592e-5
allele num: 63882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9474
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 1.490891e6

FS
type: SiteQuality
SIO_000300: 3.563e0

MQ
type: SiteQuality
SIO_000300: 5.512e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.32e0

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

VQSLOD
type: SiteQuality
SIO_000300: -1.372e0

QD
type: SiteQuality
SIO_000300: 4.86e0

GenotypeQuality
all individuals: 35219
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
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variant carriers: 0

GenotypeQuality
all individuals: 66
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variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.25e1
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GenotypeQuality
all individuals: 81
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variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 4.204330460374186e-4
allele num: 9514
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 134
allele frequency: 2.092311535819124e-3
allele num: 64044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.671064743786437e-4
allele num: 6518
num of homozygotes: 0

Latino
type: Population
allele count: 40
allele frequency: 3.49283967865875e-3
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.424657534246575e-3
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.079766536964981e-5
allele num: 16448
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.922e0

QD
type: SiteQuality
SIO_000300: 9.57e0

FS
type: SiteQuality
SIO_000300: 1.135e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.41e-1

MQ
type: SiteQuality
SIO_000300: 5.277e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

DP
type: SiteQuality
SIO_000300: 1.505692e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.555e-1

GenotypeQuality
all individuals: 194
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2697
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3491
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
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variant carriers: 0

GenotypeQuality
all individuals: 196
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 176
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variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35284
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.55938123752495e-5
allele num: 64128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9528
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.87e0

FS
type: SiteQuality
SIO_000300: 2.246e0

VQSLOD
type: SiteQuality
SIO_000300: -1.484e0

QD
type: SiteQuality
SIO_000300: 5.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

MQ
type: SiteQuality
SIO_000300: 5.278e1

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

DP
type: SiteQuality
SIO_000300: 1.507001e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 81
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 3

GenotypeQuality
all individuals: 7865
bin: 9.75e1
variant carriers: 4834

GenotypeQuality
all individuals: 1535
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 32234
bin: 6.25e1
variant carriers: 9

GenotypeQuality
all individuals: 179
bin: 3.25e1
variant carriers: 3

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1059
bin: 8.75e1
variant carriers: 16

GenotypeQuality
all individuals: 2543
bin: 7.25e1
variant carriers: 14

Other
type: Population
allele count: 39
allele frequency: 4.421768707482993e-2
allele num: 882
num of homozygotes: 2

African
type: Population
allele count: 846
allele frequency: 8.796007485963818e-2
allele num: 9618
num of homozygotes: 2

South Asian
type: Population
allele count: 756
allele frequency: 4.593510754648195e-2
allele num: 16458
num of homozygotes: 14

East Asian
type: Population
allele count: 13
allele frequency: 1.535191308455361e-3
allele num: 8468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 413
allele frequency: 6.305343511450381e-2
allele num: 6550
num of homozygotes: 11

Latino
type: Population
allele count: 157
allele frequency: 1.369982547993019e-2
allele num: 11460
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 2780
allele frequency: 4.317708818687292e-2
allele num: 64386
num of homozygotes: 44

VQSLOD
type: SiteQuality
SIO_000300: -3.187e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

DP
type: SiteQuality
SIO_000300: 1.699447e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.14e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 5.638e1

FS
type: SiteQuality
SIO_000300: 1.091e0

QD
type: SiteQuality
SIO_000300: 9.279999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

GenotypeQuality
all individuals: 173
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
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variant carriers: 0

GenotypeQuality
all individuals: 38
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GenotypeQuality
all individuals: 226
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variant carriers: 0

GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 1128
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variant carriers: 0

GenotypeQuality
all individuals: 3418
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variant carriers: 0

GenotypeQuality
all individuals: 32540
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variant carriers: 0

GenotypeQuality
all individuals: 1466
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variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9640
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.104915080572547e-5
allele num: 64414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 1.678468e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

FS
type: SiteQuality
SIO_000300: 7.172e0

QD
type: SiteQuality
SIO_000300: 3.72e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.2e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.628e1

VQSLOD
type: SiteQuality
SIO_000300: -1.59e0

GenotypeQuality
all individuals: 93
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
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variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 2.5e0
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GenotypeQuality
all individuals: 123
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GenotypeQuality
all individuals: 1467
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GenotypeQuality
all individuals: 1130
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variant carriers: 0

GenotypeQuality
all individuals: 140
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GenotypeQuality
all individuals: 199
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GenotypeQuality
all individuals: 3421
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GenotypeQuality
all individuals: 7284
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214624073849144e-4
allele num: 16466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11464
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8468
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.551542232979582e-5
allele num: 64452
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.542e0

DP
type: SiteQuality
SIO_000300: 1.679681e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.247e0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

FS
type: SiteQuality
SIO_000300: 1.753e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.18e-1

MQ
type: SiteQuality
SIO_000300: 5.648e1

QD
type: SiteQuality
SIO_000300: 5.93e0

GenotypeQuality
all individuals: 2650
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6628
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GenotypeQuality
all individuals: 2671
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
all individuals: 1469
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3428
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.180637544273908e-4
allele num: 8470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.105e0

MQ
type: SiteQuality
SIO_000300: 5.563e1

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-1

FS
type: SiteQuality
SIO_000300: 1.4748e1

DP
type: SiteQuality
SIO_000300: 1.680667e6

VQSLOD
type: SiteQuality
SIO_000300: -2.258e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.58e-1

QD
type: SiteQuality
SIO_000300: 6.0e0

GenotypeQuality
all individuals: 2671
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6628
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
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GenotypeQuality
all individuals: 167
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GenotypeQuality
all individuals: 32515
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GenotypeQuality
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GenotypeQuality
all individuals: 7300
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.549858962834382e-5
allele num: 64522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8470
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.4748e1

QD
type: SiteQuality
SIO_000300: 6.0e0

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.105e0

DP
type: SiteQuality
SIO_000300: 1.680667e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.58e-1

MQ
type: SiteQuality
SIO_000300: 5.563e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.061e0

VQSLOD
type: SiteQuality
SIO_000300: -2.258e0

GenotypeQuality
all individuals: 7316
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variant carriers: 0

GenotypeQuality
all individuals: 17
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GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 169
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GenotypeQuality
all individuals: 1475
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GenotypeQuality
all individuals: 32572
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2657
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3431
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6641
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 1139
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214624073849144e-4
allele num: 16466
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.030715316429602e-4
allele num: 9702
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.615974886641088e-4
allele num: 11468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.322197108090535e-4
allele num: 64594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.706e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.682783e6

FS
type: SiteQuality
SIO_000300: 2.737e0

QD
type: SiteQuality
SIO_000300: 3.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.522e0

MQRankSum
type: SiteQuality
SIO_000300: 8.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.569e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

GenotypeQuality
all individuals: 54
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3436
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6642
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1146
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32726
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2656
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1478
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545690614566588e-5
allele num: 64696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9742
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.462e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.316e0

VQSLOD
type: SiteQuality
SIO_000300: -2.256e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

QD
type: SiteQuality
SIO_000300: 2.68e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 1.683757e6

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2690
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1398
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1152
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32754
bin: 6.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023331968890708e-4
allele num: 9772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.5e-1

DP
type: SiteQuality
SIO_000300: 1.685601e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.121e1

VQSLOD
type: SiteQuality
SIO_000300: -3.609e0

MQRankSum
type: SiteQuality
SIO_000300: -3.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.267e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

GenotypeQuality
all individuals: 142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6661
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 165
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32695
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2694
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.851966170751281e-4
allele num: 64796
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11470
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.214e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.589e1

DP
type: SiteQuality
SIO_000300: 1.686843e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

QD
type: SiteQuality
SIO_000300: 3.72e0

GenotypeQuality
all individuals: 32112
bin: 6.25e1
variant carriers: 23

GenotypeQuality
all individuals: 234
bin: 2.75e1
variant carriers: 20

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 25

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 17

GenotypeQuality
all individuals: 202
bin: 7.5e0
variant carriers: 22

GenotypeQuality
all individuals: 1335
bin: 2.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1475
bin: 9.25e1
variant carriers: 16

GenotypeQuality
all individuals: 213
bin: 3.75e1
variant carriers: 18

GenotypeQuality
all individuals: 7242
bin: 6.75e1
variant carriers: 18

GenotypeQuality
all individuals: 6668
bin: 9.75e1
variant carriers: 405

Latino
type: Population
allele count: 38
allele frequency: 3.321097710190526e-3
allele num: 11442
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214329083181542e-4
allele num: 16470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

African
type: Population
allele count: 656
allele frequency: 7.18353044240035e-2
allele num: 9132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.624428800790416e-4
allele num: 64776
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.267573696145125e-3
allele num: 882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.742699e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

MQ
type: SiteQuality
SIO_000300: 5.208e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

FS
type: SiteQuality
SIO_000300: 1.514e0

QD
type: SiteQuality
SIO_000300: 1.46e0

VQSLOD
type: SiteQuality
SIO_000300: -8.956e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.197e0

GenotypeQuality
all individuals: 2675
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32112
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2651
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6668
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 145
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543781647523774e-5
allele num: 64776
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.46e0

DP
type: SiteQuality
SIO_000300: 1.742699e6

FS
type: SiteQuality
SIO_000300: 1.514e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.01e0

MQ
type: SiteQuality
SIO_000300: 5.208e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

VQSLOD
type: SiteQuality
SIO_000300: -8.956e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.197e0

GenotypeQuality
all individuals: 3394
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 118
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7268
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32001
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2648
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2685
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 214
bin: 3.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 24
allele frequency: 3.694353795948526e-4
allele num: 64964
num of homozygotes: 0

Latino
type: Population
allele count: 31
allele frequency: 2.701289647960962e-3
allele num: 11476
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8498
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.035454103933948e-4
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 455
allele frequency: 4.603399433427762e-2
allele num: 9884
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.386004514672686e-3
allele num: 886
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.765691e6

MQ
type: SiteQuality
SIO_000300: 5.272e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

FS
type: SiteQuality
SIO_000300: 2.449e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.34e0

MQRankSum
type: SiteQuality
SIO_000300: 3.07e0

QD
type: SiteQuality
SIO_000300: 6.22e0

GenotypeQuality
all individuals: 104
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2707
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1490
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3416
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7595
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.008471157724889e-4
allele num: 9916
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

FS
type: SiteQuality
SIO_000300: 6.019e0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.036e0

VQSLOD
type: SiteQuality
SIO_000300: -2.249e0

MQ
type: SiteQuality
SIO_000300: 5.335e1

DP
type: SiteQuality
SIO_000300: 1.765383e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.96e-1

QD
type: SiteQuality
SIO_000300: 8.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.5e-2

GenotypeQuality
all individuals: 3421
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7317
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7606
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2719
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.531299767242435e-5
allele num: 65304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16476
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

MQ
type: SiteQuality
SIO_000300: 5.634e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.768707e6

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 7.17e0

FS
type: SiteQuality
SIO_000300: 1.711e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

GenotypeQuality
all individuals: 159
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32334
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3421
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7606
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 187
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65304
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.820830298616169e-4
allele num: 16476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.634e1

QD
type: SiteQuality
SIO_000300: 7.17e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

FS
type: SiteQuality
SIO_000300: 1.711e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

DP
type: SiteQuality
SIO_000300: 1.768707e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

GenotypeQuality
all individuals: 2670
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32393
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1495
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1160
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.12294881214793e-5
allele num: 65328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.191e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.277e0

MQRankSum
type: SiteQuality
SIO_000300: 6.44e-1

FS
type: SiteQuality
SIO_000300: 3.312e0

DP
type: SiteQuality
SIO_000300: 1.769327e6

QD
type: SiteQuality
SIO_000300: 4.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 5.575e1