7-2623971-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2623971
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2623971
    reference: chr 7
allele count: 1
allele frequency: 8.279927799029592e-6
allele num: 120774
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.671+52A>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.927+52A>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.629+52A>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000497572
  gene symbol: IQCE
  hgvsc: ENST00000497572.1:n.387A>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.776+52A>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.824+52A>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*601+52A>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.245+52A>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.958+52A>T
  variant of: http://identifiers.org/hgnc/29171
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20495
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4328
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4654
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4739
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

7-2625791-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625791
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625791
    reference: chr 7
allele count: 1
allele frequency: 9.251892011916437e-6
allele num: 108086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-51G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-51G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-51G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-51G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-51G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-51G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-51G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-51G>A
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14664
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11172
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3286
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6274
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6176
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5271
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

7-2625801-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625801
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625801
    reference: chr 7
allele count: 1
allele frequency: 9.211835366078337e-6
allele num: 108556
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-41C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-41C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-41C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-41C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-41C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-41C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-41C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-41C>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6644
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17931
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9964
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 482
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3950
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1616
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1377
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

7-2625804-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625804
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625804
    reference: chr 7
allele count: 2
allele frequency: 1.832945359898821e-5
allele num: 109114
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-38A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-38A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-38A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-38A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-38A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-38A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-38A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-38A>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7397
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21068
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3036
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1385
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5406
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-2625808-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625808
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625808
    reference: chr 7
allele count: 1
allele frequency: 9.127752017233197e-6
allele num: 109556
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-34A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-34A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-34A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-34A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-34A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-34A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-34A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-34A>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3285
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7392
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11495
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1749
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5862
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4903
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1713
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25551
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

7-2625809-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625809
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625809
    reference: chr 7
allele count: 1
allele frequency: 9.123421648054886e-6
allele num: 109608
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-33T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-33T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-33T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-33T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-33T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-33T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-33T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-33T>C
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25316
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7476
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2731
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 716
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4940
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum

7-2625816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625816
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625816
    reference: chr 7
allele count: 2
allele frequency: 1.806684733514002e-5
allele num: 110700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-26C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-26C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-26C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-26C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-26C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-26C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-26C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-26C>T
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 857
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30777
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-2625819-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625819
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625819
    reference: chr 7
allele count: 331
allele frequency: 2.966906887526442e-3
allele num: 111564
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-23A>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 31135
  bin: 2.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 4.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8775
  bin: 2.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2132
  bin: 1.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6712
  bin: 1.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3874
  bin: 3.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 9.75e1
  variant carriers: 318
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5702
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2978
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQ

7-2625825-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625825
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625825
    reference: chr 7
allele count: 15
allele frequency: 1.331392458993112e-4
allele num: 112664
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-17C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-17C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-17C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-17C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-17C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-17C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-17C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-17C>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32925
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9570
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2001
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4238
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

7-2625825-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625825
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625825
    reference: chr 7
allele count: 25
allele frequency: 2.218987431655187e-4
allele num: 112664
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-17C>T
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32925
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9570
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2162
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1514
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff

7-2625826-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625826
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625826
    reference: chr 7
allele count: 2
allele frequency: 1.766628389718223e-5
allele num: 113210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-16G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-16G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-16G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-16G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-16G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-16G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-16G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-16G>A
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-2625826-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625826
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625826
    reference: chr 7
allele count: 1
allele frequency: 8.833141948591114e-6
allele num: 113210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-16G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-16G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-16G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-16G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-16G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-16G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-16G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-16G>C
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33545
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3994
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6140
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1920
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

7-2625826-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625826
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625826
    reference: chr 7
allele count: 1
allele frequency: 8.833141948591114e-6
allele num: 113210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-16G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-16G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-16G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-16G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-16G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-16G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-16G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-16G>T
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9766
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33545
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1540
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1176
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

7-2625829-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625829
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625829
    reference: chr 7
allele count: 7
allele frequency: 6.139596891609802e-5
allele num: 114014
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-13T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-13T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-13T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-13T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-13T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-13T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-13T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-13T>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 34537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9992
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 328
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

7-2625830-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625830
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625830
    reference: chr 7
allele count: 24
allele frequency: 2.102423042556546e-4
allele num: 114154
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-12T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-12T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-12T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-12T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-12T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-12T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-12T>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-12T>C
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1073
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10048
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 34780
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36872
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3510
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2272
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD

7-2625831-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625831
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625831
    reference: chr 7
allele count: 20
allele frequency: 1.749842514173724e-4
allele num: 114296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-11G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-11G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-11G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-11G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-11G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-11G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-11G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-11G>A
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34805
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4554
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10183
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 845
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ClippingRankSum

7-2625834-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625834
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625834
    reference: chr 7
allele count: 1
allele frequency: 8.710953152493945e-6
allele num: 114798
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-8T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-8T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-8T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-8T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-8T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-8T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-8T>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-8T>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4677
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2844
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3148
  bin: 2.25e1
  variant carriers: 0
hgvs: c.825-8T>G
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-2625838-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625838
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625838
    reference: chr 7
allele count: 24769
allele frequency: 2.123142068539884e-1
allele num: 116662
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-4C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-4C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-4C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-4C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-4C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-4C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-4C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-4C>T
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1901
  bin: 4.75e1
  variant carriers: 1615
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 6.25e1
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 10937
  bin: 2.75e1
  variant carriers: 3719
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 123
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 1.25e1
  variant carriers: 463
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 5.25e1
  variant carriers: 946
genotype depth: GenotypeDepth
  all individuals: 1961
  bin: 1.75e1
  variant carriers: 1391
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 7.5e0
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 3.75e1
  variant carriers: 3349
genotype depth: GenotypeDepth
  all individuals: 2880
  bin: 4.25e1
  variant carriers: 2297
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 24177
  bin: 2.25e1
  variant carriers: 2613
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 6.75e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 5.75e1
  variant carriers: 583
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.25e1
  variant carriers: 172
genotype depth: GenotypeDepth
  all individuals: 7298
  bin: 3.25e1
  variant carriers: 3773
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 4.25e1
  variant carriers: 64
genotype quality: GenotypeQuality
  all individuals: 471
  bin: 5.25e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 841
  bin: 8.25e1
  variant carriers: 239
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 4301
  bin: 6.75e1
  variant carriers: 191
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 7.25e1
  variant carriers: 130
hgvs: c.825-4C>T
num of homozygotes: 2890
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum

7-2625840-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625840
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625840
    reference: chr 7
allele count: 1
allele frequency: 8.520064752492119e-6
allele num: 117370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.959-2A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.825-2A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.928-2A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.630-2A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.777-2A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.246-2A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.672-2A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*602-2A>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1771
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11991
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1563
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8328
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2642
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1906
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
hgvs: c.825-2A>G
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

7-2625843-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625843
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625843
    reference: chr 7
allele count: 2
allele frequency: 1.701461555476154e-5
allele num: 117546
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.778C>T
  hgvsp: ENSP00000396178.2:p.Pro260Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.826C>T
  hgvsp: ENSP00000385597.2:p.Pro276Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.960C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.631C>T
  hgvsp: ENSP00000313772.7:p.Pro211Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.673C>T
  hgvsp: ENSP00000385945.1:p.Pro225Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.929C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*603C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.247C>T
  hgvsp: ENSP00000415261.1:p.Pro83Ser
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12257
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4471
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2615
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro276Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

7-2625845-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625845
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625845
    reference: chr 7
allele count: 13
allele frequency: 1.102909985577331e-4
allele num: 117870
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.931C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.962C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.633C>T
  hgvsp: ENST00000325979.7:c.633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.780C>T
  hgvsp: ENST00000438376.2:c.780C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.828C>T
  hgvsp: ENST00000402050.2:c.828C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*605C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.249C>T
  hgvsp: ENST00000427817.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.675C>T
  hgvsp: ENST00000404984.1:c.675C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24446
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12388
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4472
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 651
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36954
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro276Pro
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: QD

7-2625848-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625848
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625848
    reference: chr 7
allele count: 313
allele frequency: 2.649264469385337e-3
allele num: 118146
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*608G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.831G>A
  hgvsp: ENST00000402050.2:c.831G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.252G>A
  hgvsp: ENST00000427817.1:c.252G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.934G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.783G>A
  hgvsp: ENST00000438376.2:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.678G>A
  hgvsp: ENST00000404984.1:c.678G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.636G>A
  hgvsp: ENST00000325979.7:c.636G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.965G>A
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1189
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24440
  bin: 2.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 4.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 3.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 12610
  bin: 2.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 3.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 1.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu277Leu
num of homozygotes: 3
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

7-2625852-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625852
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625852
    reference: chr 7
allele count: 1
allele frequency: 8.446516656530846e-6
allele num: 118392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.787G>A
  hgvsp: ENSP00000396178.2:p.Glu263Lys
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.640G>A
  hgvsp: ENSP00000313772.7:p.Glu214Lys
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*612G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.938G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.969G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.835G>A
  hgvsp: ENSP00000385597.2:p.Glu279Lys
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.682G>A
  hgvsp: ENSP00000385945.1:p.Glu228Lys
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.256G>A
  hgvsp: ENSP00000415261.1:p.Glu86Lys
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12868
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1098
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8408
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8597
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37905
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu279Lys
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/7-2625859-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625859
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625859
    reference: chr 7
allele count: 2
allele frequency: 1.683020011107932e-5
allele num: 118834
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.689A>C
  hgvsp: ENSP00000385945.1:p.Lys230Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.842A>C
  hgvsp: ENSP00000385597.2:p.Lys281Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.263A>C
  hgvsp: ENSP00000415261.1:p.Lys88Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.647A>C
  hgvsp: ENSP00000313772.7:p.Lys216Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.976A>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.794A>C
  hgvsp: ENSP00000396178.2:p.Lys265Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*619A>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.945A>C
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1074
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13107
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2878
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38845
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 369
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys281Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: African
population: South Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-2625861-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625861
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625861
    reference: chr 7
allele count: 1
allele frequency: 8.409014463504877e-6
allele num: 118920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.691A>T
  hgvsp: ENSP00000385945.1:p.Thr231Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.978A>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.947A>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.796A>T
  hgvsp: ENSP00000396178.2:p.Thr266Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.844A>T
  hgvsp: ENSP00000385597.2:p.Thr282Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*621A>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.649A>T
  hgvsp: ENSP00000313772.7:p.Thr217Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.265A>T
  hgvsp: ENSP00000415261.1:p.Thr89Ser
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13168
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8559
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2879
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 601
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr282Ser
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

7-2625862-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625862
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625862
    reference: chr 7
allele count: 152
allele frequency: 1.278041233646117e-3
allele num: 118932
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.948C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.797C>T
  hgvsp: ENSP00000396178.2:p.Thr266Met
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.266C>T
  hgvsp: ENSP00000415261.1:p.Thr89Met
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.845C>T
  hgvsp: ENSP00000385597.2:p.Thr282Met
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*622C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.650C>T
  hgvsp: ENSP00000313772.7:p.Thr217Met
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.979C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.692C>T
  hgvsp: ENSP00000385945.1:p.Thr231Met
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 3.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 13249
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24597
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8647
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8658
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38738
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr282Met
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

7-2625863-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625863
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625863
    reference: chr 7
allele count: 2
allele frequency: 1.680672268907563e-5
allele num: 119000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.980G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.949G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.846G>A
  hgvsp: ENST00000402050.2:c.846G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.693G>A
  hgvsp: ENST00000404984.1:c.693G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*623G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.267G>A
  hgvsp: ENST00000427817.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.651G>A
  hgvsp: ENST00000325979.7:c.651G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.798G>A
  hgvsp: ENST00000438376.2:c.798G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1407
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38973
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Thr282Thr
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

7-2625863-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625863
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625863
    reference: chr 7
allele count: 1
allele frequency: 8.403361344537815e-6
allele num: 119000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.980G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.267G>C
  hgvsp: ENST00000427817.1:c.267G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.798G>C
  hgvsp: ENST00000438376.2:c.798G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.651G>C
  hgvsp: ENST00000325979.7:c.651G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.693G>C
  hgvsp: ENST00000404984.1:c.693G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.846G>C
  hgvsp: ENST00000402050.2:c.846G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*623G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.949G>C
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24562
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8692
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8723
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1081
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Thr282Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS

7-2625866-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625866
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625866
    reference: chr 7
allele count: 24
allele frequency: 2.01487650486089e-4
allele num: 119114
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.801C>T
  hgvsp: ENST00000438376.2:c.801C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.270C>T
  hgvsp: ENST00000427817.1:c.270C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.654C>T
  hgvsp: ENST00000325979.7:c.654C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.849C>T
  hgvsp: ENST00000402050.2:c.849C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*626C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.983C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.696C>T
  hgvsp: ENST00000404984.1:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.952C>T
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13532
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24404
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8776
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2881
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly283Gly
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

7-2625867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625867
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625867
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 119176
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.697G>A
  hgvsp: ENSP00000385945.1:p.Ala233Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.984G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.802G>A
  hgvsp: ENSP00000396178.2:p.Ala268Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.271G>A
  hgvsp: ENSP00000415261.1:p.Ala91Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.655G>A
  hgvsp: ENSP00000313772.7:p.Ala219Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.850G>A
  hgvsp: ENSP00000385597.2:p.Ala284Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*627G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.953G>A
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8887
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13618
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 303
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala284Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

7-2625869-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625869
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625869
    reference: chr 7
allele count: 1
allele frequency: 8.382932349735938e-6
allele num: 119290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.804C>G
  hgvsp: ENST00000438376.2:c.804C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.273C>G
  hgvsp: ENST00000427817.1:c.273C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.955C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.657C>G
  hgvsp: ENST00000325979.7:c.657C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.852C>G
  hgvsp: ENST00000402050.2:c.852C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.699C>G
  hgvsp: ENST00000404984.1:c.699C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.986C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*629C>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13725
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24372
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1633
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2581
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 604
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala284Ala
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-2625871-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625871
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625871
    reference: chr 7
allele count: 1
allele frequency: 8.374928813105088e-6
allele num: 119404
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.957A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.854A>G
  hgvsp: ENSP00000385597.2:p.Lys285Arg
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.701A>G
  hgvsp: ENSP00000385945.1:p.Lys234Arg
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.988A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.275A>G
  hgvsp: ENSP00000415261.1:p.Lys92Arg
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.659A>G
  hgvsp: ENSP00000313772.7:p.Lys220Arg
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*631A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.806A>G
  hgvsp: ENSP00000396178.2:p.Lys269Arg
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13807
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8963
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Lys285Arg
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

7-2625889-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625889
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625889
    reference: chr 7
allele count: 1
allele frequency: 8.351986102295126e-6
allele num: 119732
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1006G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*649G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.293G>A
  hgvsp: ENSP00000415261.1:p.Gly98Asp
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.872G>A
  hgvsp: ENSP00000385597.2:p.Gly291Asp
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.975G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.824G>A
  hgvsp: ENSP00000396178.2:p.Gly275Asp
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.677G>A
  hgvsp: ENSP00000313772.7:p.Gly226Asp
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.719G>A
  hgvsp: ENSP00000385945.1:p.Gly240Asp
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4686
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2585
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1047
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 226
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly291Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

7-2625892-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625892
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625892
    reference: chr 7
allele count: 1
allele frequency: 8.350312301680083e-6
allele num: 119756
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*652G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.827G>C
  hgvsp: ENSP00000396178.2:p.Ser276Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.296G>C
  hgvsp: ENSP00000415261.1:p.Ser99Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.978G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.875G>C
  hgvsp: ENSP00000385597.2:p.Ser292Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.680G>C
  hgvsp: ENSP00000313772.7:p.Ser227Thr
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1009G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.722G>C
  hgvsp: ENSP00000385945.1:p.Ser241Thr
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 647
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser292Thr
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: G
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-2625896-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625896
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625896
    reference: chr 7
allele count: 315
allele frequency: 2.628724025703079e-3
allele num: 119830
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*656C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.879C>T
  hgvsp: ENST00000402050.2:c.879C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.300C>T
  hgvsp: ENST00000427817.1:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.684C>T
  hgvsp: ENST00000325979.7:c.684C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.982C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1013C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.726C>T
  hgvsp: ENST00000404984.1:c.726C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.831C>T
  hgvsp: ENST00000438376.2:c.831C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 23926
  bin: 2.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2706
  bin: 4.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14276
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 4724
  bin: 3.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 544
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9296
  bin: 3.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 603
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2919
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8857
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1303
  bin: 9.75e1
  variant carriers: 308
hgvs: p.Ala293Ala
num of homozygotes: 5
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum

7-2625906-TTGTCCCGGAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625906
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625896
    reference: chr 7
allele count: 126
allele frequency: 1.050665421433575e-3
allele num: 119924
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsp: ENSP00000396178.2:p.Val285SerfsTer8
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsp: ENSP00000415261.1:p.Val108SerfsTer8
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsp: ENSP00000313772.7:p.Val236SerfsTer8
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsp: ENSP00000385945.1:p.Val250SerfsTer8
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsp: ENSP00000385597.2:p.Val301SerfsTer8
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4769
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23771
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 14462
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2707
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 4.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 9407
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8983
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2944
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 534
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val301SerfsTer8
num of homozygotes: 1
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: TTGTCCCGGAG
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

7-2625912-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625912
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625912
    reference: chr 7
allele count: 1
allele frequency: 8.354498061756449e-6
allele num: 119696
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.847C>T
  hgvsp: ENSP00000396178.2:p.Arg283Trp
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.742C>T
  hgvsp: ENSP00000385945.1:p.Arg248Trp
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.700C>T
  hgvsp: ENSP00000313772.7:p.Arg234Trp
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*672C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1029C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.895C>T
  hgvsp: ENSP00000385597.2:p.Arg299Trp
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.316C>T
  hgvsp: ENSP00000415261.1:p.Arg106Trp
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.998C>T
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9490
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23606
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg299Trp
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

7-2625913-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625913
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625913
    reference: chr 7
allele count: 4
allele frequency: 3.341408403642135e-5
allele num: 119710
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.896G>A
  hgvsp: ENSP00000385597.2:p.Arg299Gln
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.999G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1030G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*673G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.743G>A
  hgvsp: ENSP00000385945.1:p.Arg248Gln
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.317G>A
  hgvsp: ENSP00000415261.1:p.Arg106Gln
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.848G>A
  hgvsp: ENSP00000396178.2:p.Arg283Gln
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.701G>A
  hgvsp: ENSP00000313772.7:p.Arg234Gln
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14604
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4802
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1655
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23513
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1408
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1016
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2943
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg299Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum

7-2625926-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625926
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625926
    reference: chr 7
allele count: 2
allele frequency: 1.665445340083938e-5
allele num: 120088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1043G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.714G>C
  hgvsp: ENSP00000313772.7:p.Glu238Asp
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1012G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.909G>C
  hgvsp: ENSP00000385597.2:p.Glu303Asp
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.330G>C
  hgvsp: ENSP00000415261.1:p.Glu110Asp
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*686G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.756G>C
  hgvsp: ENSP00000385945.1:p.Glu252Asp
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.861G>C
  hgvsp: ENSP00000396178.2:p.Glu287Asp
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4833
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2724
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu303Asp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-2625929-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625929
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625929
    reference: chr 7
allele count: 4
allele frequency: 3.33022512321833e-5
allele num: 120112
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.864C>T
  hgvsp: ENST00000438376.2:c.864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.333C>T
  hgvsp: ENST00000427817.1:c.333C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.717C>T
  hgvsp: ENST00000325979.7:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.759C>T
  hgvsp: ENST00000404984.1:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1046C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.912C>T
  hgvsp: ENST00000402050.2:c.912C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1015C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*689C>T
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4839
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14814
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23513
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41068
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2607
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu304Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-2625931-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625931
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625931
    reference: chr 7
allele count: 2
allele frequency: 1.665029387768694e-5
allele num: 120118
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1048C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.914C>T
  hgvsp: ENSP00000385597.2:p.Thr305Met
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.335C>T
  hgvsp: ENSP00000415261.1:p.Thr112Met
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.866C>T
  hgvsp: ENSP00000396178.2:p.Thr289Met
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1017C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*691C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.719C>T
  hgvsp: ENSP00000313772.7:p.Thr240Met
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.761C>T
  hgvsp: ENSP00000385945.1:p.Thr254Met
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9672
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23480
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41031
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2969
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr305Met
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

7-2625932-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625932
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625932
    reference: chr 7
allele count: 2
allele frequency: 1.665195743759679e-5
allele num: 120106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.867G>T
  hgvsp: ENST00000438376.2:c.867G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1049G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1018G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.720G>T
  hgvsp: ENST00000325979.7:c.720G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.336G>T
  hgvsp: ENST00000427817.1:c.336G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.915G>T
  hgvsp: ENST00000402050.2:c.915G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*692G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.762G>T
  hgvsp: ENST00000404984.1:c.762G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1426
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr305Thr
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

7-2625943-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625943
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625943
    reference: chr 7
allele count: 2
allele frequency: 1.664447403462051e-5
allele num: 120160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*703A>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.926A>T
  hgvsp: ENSP00000385597.2:p.Gln309Leu
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.773A>T
  hgvsp: ENSP00000385945.1:p.Gln258Leu
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1060A>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.731A>T
  hgvsp: ENSP00000313772.7:p.Gln244Leu
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.347A>T
  hgvsp: ENSP00000415261.1:p.Gln116Leu
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.878A>T
  hgvsp: ENSP00000396178.2:p.Gln293Leu
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1029A>T
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9714
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gln309Leu
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

7-2625952-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625952
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625952
    reference: chr 7
allele count: 1
allele frequency: 8.32209850035785e-6
allele num: 120162
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*712A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1069A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.935A>G
  hgvsp: ENSP00000385597.2:p.Lys312Arg
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.782A>G
  hgvsp: ENSP00000385945.1:p.Lys261Arg
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.740A>G
  hgvsp: ENSP00000313772.7:p.Lys247Arg
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.356A>G
  hgvsp: ENSP00000415261.1:p.Lys119Arg
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.887A>G
  hgvsp: ENSP00000396178.2:p.Lys296Arg
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1038A>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9734
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14950
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1432
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9056
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys312Arg
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

7-2625953-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625953
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625953
    reference: chr 7
allele count: 64
allele frequency: 5.326231691078562e-4
allele num: 120160
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.936G>A
  hgvsp: ENST00000402050.2:c.936G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1039G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.357G>A
  hgvsp: ENST00000427817.1:c.357G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.783G>A
  hgvsp: ENST00000404984.1:c.783G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*713G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.741G>A
  hgvsp: ENST00000325979.7:c.741G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1070G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.888G>A
  hgvsp: ENST00000438376.2:c.888G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14944
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 23331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9721
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4865
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 468
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys312Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-2625956-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625956
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625956
    reference: chr 7
allele count: 1
allele frequency: 8.322375538873816e-6
allele num: 120158
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.744G>A
  hgvsp: ENST00000325979.7:c.744G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*716G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.786G>A
  hgvsp: ENST00000404984.1:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.360G>A
  hgvsp: ENST00000427817.1:c.360G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1042G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.939G>A
  hgvsp: ENST00000402050.2:c.939G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.891G>A
  hgvsp: ENST00000438376.2:c.891G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1073G>A
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23298
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14947
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2979
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu313Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

7-2625965-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625965
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625965
    reference: chr 7
allele count: 2
allele frequency: 1.664835347784104e-5
allele num: 120132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1051C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.753C>T
  hgvsp: ENST00000325979.7:c.753C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1082C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.795C>T
  hgvsp: ENST00000404984.1:c.795C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.948C>T
  hgvsp: ENST00000402050.2:c.948C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*725C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.369C>T
  hgvsp: ENST00000427817.1:c.369C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.900C>T
  hgvsp: ENST00000438376.2:c.900C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9757
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4887
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1679
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2739
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp316Asp
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

7-2625966-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625966
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625966
    reference: chr 7
allele count: 959
allele frequency: 7.983284218237517e-3
allele num: 120126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1052C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1083C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.754C>T
  hgvsp: ENSP00000313772.7:p.Arg252Cys
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.901C>T
  hgvsp: ENSP00000396178.2:p.Arg301Cys
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.796C>T
  hgvsp: ENSP00000385945.1:p.Arg266Cys
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.370C>T
  hgvsp: ENSP00000415261.1:p.Arg124Cys
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*726C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.949C>T
  hgvsp: ENSP00000385597.2:p.Arg317Cys
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 14767
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2772
  bin: 4.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 22771
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 5.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 5.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 4.75e1
  variant carriers: 98
genotype depth: GenotypeDepth
  all individuals: 4890
  bin: 3.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9677
  bin: 3.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 67
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8914
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 9.25e1
  variant carriers: 1
hgvs: p.Arg317Cys
num of homozygotes: 40
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-2625967-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625967
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625967
    reference: chr 7
allele count: 10
allele frequency: 8.325978718798394e-5
allele num: 120106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.902G>A
  hgvsp: ENSP00000396178.2:p.Arg301His
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*727G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.371G>A
  hgvsp: ENSP00000415261.1:p.Arg124His
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.755G>A
  hgvsp: ENSP00000313772.7:p.Arg252His
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.797G>A
  hgvsp: ENSP00000385945.1:p.Arg266His
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1053G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.950G>A
  hgvsp: ENSP00000385597.2:p.Arg317His
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1084G>A
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9841
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1752
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4965
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41065
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg317His
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

7-2625968-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625968
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625968
    reference: chr 7
allele count: 1
allele frequency: 8.325008325008325e-6
allele num: 120120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1054C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.903C>T
  hgvsp: ENST00000438376.2:c.903C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.798C>T
  hgvsp: ENST00000404984.1:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1085C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.756C>T
  hgvsp: ENST00000325979.7:c.756C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.372C>T
  hgvsp: ENST00000427817.1:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.951C>T
  hgvsp: ENST00000402050.2:c.951C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*728C>T
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1750
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22745
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg317Arg
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

7-2625971-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625971
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625970
    reference: chr 7
allele count: 1
allele frequency: 8.325285557294615e-6
allele num: 120116
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.907delC
  hgvsp: ENSP00000396178.2:p.Leu303Ter
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.760delC
  hgvsp: ENSP00000313772.7:p.Leu254Ter
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1058delC
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.955delC
  hgvsp: ENSP00000385597.2:p.Leu319Ter
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*732delC
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1089delC
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.802delC
  hgvsp: ENSP00000385945.1:p.Leu268Ter
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.376delC
  hgvsp: ENSP00000415261.1:p.Leu126Ter
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4970
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2590
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu319Ter
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GC
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/7-2625978-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625978
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625978
    reference: chr 7
allele count: 6
allele frequency: 4.998667022127432e-5
allele num: 120032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.808A>C
  hgvsp: ENSP00000385945.1:p.Thr270Pro
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.766A>C
  hgvsp: ENSP00000313772.7:p.Thr256Pro
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*738A>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1095A>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.961A>C
  hgvsp: ENSP00000385597.2:p.Thr321Pro
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.382A>C
  hgvsp: ENSP00000415261.1:p.Thr128Pro
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1064A>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.913A>C
  hgvsp: ENSP00000396178.2:p.Thr305Pro
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4972
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2801
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22355
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14824
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Thr321Pro
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: QD

7-2625984-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625984
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625984
    reference: chr 7
allele count: 1
allele frequency: 8.337085021593051e-6
allele num: 119946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.772C>G
  hgvsp: ENSP00000313772.7:p.Pro258Ala
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.919C>G
  hgvsp: ENSP00000396178.2:p.Pro307Ala
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*744C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.388C>G
  hgvsp: ENSP00000415261.1:p.Pro130Ala
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.814C>G
  hgvsp: ENSP00000385945.1:p.Pro272Ala
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.967C>G
  hgvsp: ENSP00000385597.2:p.Pro323Ala
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1101C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1070C>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2930
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro323Ala
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-2625984-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625984
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625984
    reference: chr 7
allele count: 1
allele frequency: 8.337085021593051e-6
allele num: 119946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.772C>T
  hgvsp: ENSP00000313772.7:p.Pro258Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1070C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.388C>T
  hgvsp: ENSP00000415261.1:p.Pro130Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.814C>T
  hgvsp: ENSP00000385945.1:p.Pro272Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1101C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*744C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.967C>T
  hgvsp: ENSP00000385597.2:p.Pro323Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.919C>T
  hgvsp: ENSP00000396178.2:p.Pro307Ser
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2813
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9818
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 916
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro323Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

7-2625989-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625989
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625989
    reference: chr 7
allele count: 2
allele frequency: 1.667111229661243e-5
allele num: 119968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*749C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.972C>T
  hgvsp: ENST00000402050.2:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.393C>T
  hgvsp: ENST00000427817.1:c.393C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1106C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.819C>T
  hgvsp: ENST00000404984.1:c.819C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.777C>T
  hgvsp: ENST00000325979.7:c.777C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1075C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.924C>T
  hgvsp: ENST00000438376.2:c.924C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14695
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2814
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21878
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9802
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2567
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr324Thr
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-2625994-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2625994
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625994
    reference: chr 7
allele count: 1
allele frequency: 8.339031671642289e-6
allele num: 119918
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1080C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.398C>G
  hgvsp: ENSP00000415261.1:p.Ser133Cys
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1111C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.824C>G
  hgvsp: ENSP00000385945.1:p.Ser275Cys
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.977C>G
  hgvsp: ENSP00000385597.2:p.Ser326Cys
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.929C>G
  hgvsp: ENSP00000396178.2:p.Ser310Cys
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.782C>G
  hgvsp: ENSP00000313772.7:p.Ser261Cys
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*754C>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21623
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4984
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39864
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser326Cys
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum

7-2626002-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626002
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626002
    reference: chr 7
allele count: 560
allele frequency: 4.67359917210529e-3
allele num: 119822
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*762C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.832C>G
  hgvsp: ENSP00000385945.1:p.Gln278Glu
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1119C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.985C>G
  hgvsp: ENSP00000385597.2:p.Gln329Glu
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.937C>G
  hgvsp: ENSP00000396178.2:p.Gln313Glu
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1088C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.790C>G
  hgvsp: ENSP00000313772.7:p.Gln264Glu
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.406C>G
  hgvsp: ENSP00000415261.1:p.Gln136Glu
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 3.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 14065
  bin: 2.75e1
  variant carriers: 88
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 4.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 4.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 9738
  bin: 3.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20803
  bin: 2.25e1
  variant carriers: 81
genotype quality: GenotypeQuality
  all individuals: 38520
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 537
genotype quality: GenotypeQuality
  all individuals: 8616
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2757
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gln329Glu
num of homozygotes: 11
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

7-2626002-CAGGGTACCTTCCTGAAAGCCACTCCAGGAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626002
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2625972
    reference: chr 7
allele count: 1
allele frequency: 8.345712807330875e-6
allele num: 119822
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: coding_sequence_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1797
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20803
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: CAGGGTACCTTCCTGAAAGCCACTCCAGGAG
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD

7-2626005-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626005
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626005
    reference: chr 7
allele count: 1
allele frequency: 8.391937026904549e-6
allele num: 119162
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.793G>A
  hgvsp: ENSP00000313772.7:p.Gly265Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.409G>A
  hgvsp: ENSP00000415261.1:p.Gly137Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.940G>A
  hgvsp: ENSP00000396178.2:p.Gly314Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.988G>A
  hgvsp: ENSP00000385597.2:p.Gly330Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1122G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*765G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.835G>A
  hgvsp: ENSP00000385945.1:p.Gly279Ser
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1091G>A
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20261
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13782
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5083
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2029
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2940
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9699
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3379
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37869
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly330Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

7-2626006-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626006
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626006
    reference: chr 7
allele count: 1
allele frequency: 8.390810384466932e-6
allele num: 119178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.835+1G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.940+1G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.793+1G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.988+1G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.409+1G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1122+1G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*765+1G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1091+1G>T
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5098
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2941
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9675
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1886
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 608
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2370
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 497
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 4.75e1
  variant carriers: 0
hgvs: c.988+1G>T
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-2626009-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626009
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626009
    reference: chr 7
allele count: 13
allele frequency: 1.094478775530822e-4
allele num: 118778
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.988+4C>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*765+4C>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.940+4C>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.835+4C>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.793+4C>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1091+4C>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1122+4C>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.409+4C>A
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3086
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9739
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1036
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13262
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36770
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 3.25e1
  variant carriers: 0
hgvs: c.988+4C>A
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD

7-2626022-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626022
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626022
    reference: chr 7
allele count: 1
allele frequency: 8.847521809141259e-6
allele num: 113026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1122+17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.793+17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.988+17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.835+17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.940+17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1091+17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.409+17C>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*765+17C>T
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3827
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17332
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2478
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 603
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2539
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

7-2626024-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626024
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626024
    reference: chr 7
allele count: 10
allele frequency: 8.485074753508578e-5
allele num: 117854
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1122+19C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*765+19C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.988+19C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.940+19C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.835+19C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.793+19C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1091+19C>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.409+19C>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11023
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2514
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2712
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9887
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2566
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2324
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

7-2626028-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626028
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626028
    reference: chr 7
allele count: 1
allele frequency: 8.647526807333103e-6
allele num: 115640
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.940+23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.835+23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*765+23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1122+23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1091+23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.793+23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.988+23A>G
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.409+23A>G
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9697
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1070
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3896
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14245
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1845
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3814
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2368
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3633
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

7-2626033-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626033
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626033
    reference: chr 7
allele count: 3
allele frequency: 3.294458720432233e-5
allele num: 91062
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.835+28G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.409+28G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1091+28G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.793+28G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.988+28G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*765+28G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.940+28G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1122+28G>T
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1807
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7564
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10377
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4302
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5026
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12880
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5133
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3455
  bin: 3.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

7-2626034-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626034
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626034
    reference: chr 7
allele count: 1
allele frequency: 1.186014516817686e-5
allele num: 84316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.409+29G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*765+29G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.793+29G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.940+29G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1122+29G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1091+29G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.835+29G>A
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.988+29G>A
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10431
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10026
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7561
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5067
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5250
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3256
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2094
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5055
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum

7-2626036-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626036
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626036
    reference: chr 7
allele count: 2
allele frequency: 2.496442569338692e-5
allele num: 80114
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.988+31G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.940+31G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1122+31G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1091+31G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.835+31G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*765+31G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.793+31G>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.409+31G>C
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1132
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10401
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3232
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7563
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5584
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1909
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10430
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 813
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1685
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD

7-2626038-CCAGGGAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626038
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626031
    reference: chr 7
allele count: 1
allele frequency: 9.027226113959703e-6
allele num: 110776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.835+34_835+40delCAGGGAA
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1091+34_1091+40delCAGGGAA
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1122+34_1122+40delCAGGGAA
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.409+34_409+40delCAGGGAA
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.793+34_793+40delCAGGGAA
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*765+34_*765+40delCAGGGAA
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.940+34_940+40delCAGGGAA
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.988+34_988+40delCAGGGAA
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10453
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2898
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29218
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: CCAGGGAA
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: QD

7-2626038-CCAGGGAATGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626038
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626028
    reference: chr 7
allele count: 81260
allele frequency: 7.335523940203654e-1
allele num: 110776
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 6.25e1
  variant carriers: 158
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 7.5e0
  variant carriers: 3340
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 313
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 5.75e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 3.75e1
  variant carriers: 2959
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 7375
  bin: 1.25e1
  variant carriers: 6847
genotype depth: GenotypeDepth
  all individuals: 6010
  bin: 3.25e1
  variant carriers: 5516
genotype depth: GenotypeDepth
  all individuals: 11483
  bin: 1.75e1
  variant carriers: 11059
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 4.25e1
  variant carriers: 1449
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 4.75e1
  variant carriers: 814
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 14195
  bin: 2.25e1
  variant carriers: 12467
genotype depth: GenotypeDepth
  all individuals: 10453
  bin: 2.75e1
  variant carriers: 9527
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 5.25e1
  variant carriers: 412
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 2413
  bin: 7.75e1
  variant carriers: 2215
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 3.25e1
  variant carriers: 1103
genotype quality: GenotypeQuality
  all individuals: 1686
  bin: 9.25e1
  variant carriers: 1645
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 2.5e0
  variant carriers: 107
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 1.25e1
  variant carriers: 227
genotype quality: GenotypeQuality
  all individuals: 1404
  bin: 4.25e1
  variant carriers: 1345
genotype quality: GenotypeQuality
  all individuals: 2484
  bin: 7.25e1
  variant carriers: 2296
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 8.75e1
  variant carriers: 1807
genotype quality: GenotypeQuality
  all individuals: 2138
  bin: 8.25e1
  variant carriers: 2031
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 1.75e1
  variant carriers: 423
num of homozygotes: 29953
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: CCAGGGAATGG
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

7-2626042-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626042
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626042
    reference: chr 7
allele count: 2
allele frequency: 8.987956138774042e-5
allele num: 22252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*765+37G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.409+37G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.835+37G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1091+37G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.940+37G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.988+37G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.793+37G>T
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1122+37G>T
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4704
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3091
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1134
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-2626054-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 2626054
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 2626054
    reference: chr 7
allele count: 47
allele frequency: 4.549678618446527e-4
allele num: 103304
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000396178
  ensembl transcript: ENST00000438376
  gene symbol: IQCE
  hgvsc: ENST00000438376.2:c.940+49A>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000415261
  ensembl transcript: ENST00000427817
  gene symbol: IQCE
  hgvsc: ENST00000427817.1:c.409+49A>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000476665
  gene symbol: IQCE
  hgvsc: ENST00000476665.1:n.1091+49A>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385945
  ensembl transcript: ENST00000404984
  gene symbol: IQCE
  hgvsc: ENST00000404984.1:c.835+49A>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000313772
  ensembl transcript: ENST00000325979
  gene symbol: IQCE
  hgvsc: ENST00000325979.7:c.793+49A>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000385597
  ensembl transcript: ENST00000402050
  gene symbol: IQCE
  hgvsc: ENST00000402050.2:c.988+49A>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl protein: ENSP00000314011
  ensembl transcript: ENST00000325997
  gene symbol: IQCE
  hgvsc: ENST00000325997.9:c.*765+49A>C
  variant of: http://identifiers.org/hgnc/29171
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106012
  ensembl transcript: ENST00000470731
  gene symbol: IQCE
  hgvsc: ENST00000470731.1:n.1122+49A>C
  variant of: http://identifiers.org/hgnc/29171
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6782
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11292
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10208
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3427
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 13685
  bin: 2.25e1
  variant carriers: 10
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59292
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 170
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9812
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66736
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

QD
type: SiteQuality
SIO_000300: 1.399e1

DP
type: SiteQuality
SIO_000300: 5.371403e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.28e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.88e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

GenotypeQuality
all individuals: 1557
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5040
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6599
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3621
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1377
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9302
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4027
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 929
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.634521085322001e-5
allele num: 61180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10686
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8862
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.2e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.532e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.130514e6

MQRankSum
type: SiteQuality
SIO_000300: 9.08e-1

MQ
type: SiteQuality
SIO_000300: 5.843e1

VQSLOD
type: SiteQuality
SIO_000300: -2.483e0

GenotypeQuality
all individuals: 360
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3157
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 937
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5974
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2922
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5842
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 628
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 473
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6076
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4353
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10758
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.627816121890871e-5
allele num: 61432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.369e1

FS
type: SiteQuality
SIO_000300: 6.532e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -8.98e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.256e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.043e0

DP
type: SiteQuality
SIO_000300: 1.174206e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.092e0

GenotypeQuality
all individuals: 961
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2324
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21417
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4574
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2774
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5955
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5734
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.244225279003374e-5
allele num: 61648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8942
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8102
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.667999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.866e1

DP
type: SiteQuality
SIO_000300: 1.196779e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -5.33e-1

GenotypeQuality
all individuals: 417
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2781
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5072
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1386
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 494
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10832
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.2306177701206e-4
allele num: 8126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8950
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12986
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.745e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

DP
type: SiteQuality
SIO_000300: 1.232662e6

VQSLOD
type: SiteQuality
SIO_000300: 2.82e-1

QD
type: SiteQuality
SIO_000300: 1.664e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.75e0

GenotypeQuality
all individuals: 454
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5836
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1549
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4946
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1762
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26007
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1660
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4094
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.230012300123001e-4
allele num: 8130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12992
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.511e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.843e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.607e0

QD
type: SiteQuality
SIO_000300: 7.02e0

DP
type: SiteQuality
SIO_000300: 1.239096e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
all individuals: 263
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2527
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3568
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 869
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1407
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1914
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5305
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 387
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10932
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.208213025344883e-5
allele num: 62340
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.307e0

QD
type: SiteQuality
SIO_000300: 1.146e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.63e-1

FS
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 1.16e-1

DP
type: SiteQuality
SIO_000300: 1.296484e6

VQSLOD
type: SiteQuality
SIO_000300: 2.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

GenotypeQuality
all individuals: 299
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 221
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 32623
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 4927
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1904
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 467
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1885
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 536
bin: 9.25e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 315
allele frequency: 5.0199203187251e-3
allele num: 62750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 9
allele frequency: 1.480750246791708e-3
allele num: 6078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.81653042688465e-4
allele num: 11010
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.41306266548985e-4
allele num: 9064
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.204819277108434e-3
allele num: 830
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.84e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.582e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

FS
type: SiteQuality
SIO_000300: 3.43e0

QD
type: SiteQuality
SIO_000300: 1.092e1

DP
type: SiteQuality
SIO_000300: 1.322158e6

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
all individuals: 77
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6035
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34430
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1514
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1358
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1557
bin: 9.75e1
variant carriers: 14

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9142
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8288
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63178
num of homozygotes: 0

South Asian
type: Population
allele count: 15
allele frequency: 1.069137562366358e-3
allele num: 14030
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6104
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.419e0

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

DP
type: SiteQuality
SIO_000300: 1.361037e6

QD
type: SiteQuality
SIO_000300: 1.226e1

GenotypeQuality
all individuals: 551
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4238
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 1

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 25

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6035
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63178
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14030
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.413127413127413e-4
allele num: 8288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6104
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 2.406475607088164e-3
allele num: 9142
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.023641941887746e-5
allele num: 11082
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.73e-1

QD
type: SiteQuality
SIO_000300: 1.226e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.55e-1

DP
type: SiteQuality
SIO_000300: 1.361037e6

MQ
type: SiteQuality
SIO_000300: 5.884e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.42e-1

FS
type: SiteQuality
SIO_000300: 1.419e0

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

GenotypeQuality
all individuals: 1540
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 179
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3994
bin: 2.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.407897905128822e-4
allele num: 8306
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.895e1

DP
type: SiteQuality
SIO_000300: 1.373351e6

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

FS
type: SiteQuality
SIO_000300: 4.54e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

QD
type: SiteQuality
SIO_000300: 8.779999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

GenotypeQuality
all individuals: 331
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1540
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 52
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578133383833602e-5
allele num: 63366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

FS
type: SiteQuality
SIO_000300: 4.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-1

DP
type: SiteQuality
SIO_000300: 1.373351e6

QD
type: SiteQuality
SIO_000300: 8.779999999999999e0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2038
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
all individuals: 35453
bin: 6.25e1
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GenotypeQuality
all individuals: 1303
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3994
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6140
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2186
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578133383833602e-5
allele num: 63366
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14274
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11114
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6144
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.25e-1

MQ
type: SiteQuality
SIO_000300: 5.895e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.373351e6

FS
type: SiteQuality
SIO_000300: 4.54e0

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.17e-1

QD
type: SiteQuality
SIO_000300: 8.779999999999999e0

GenotypeQuality
all individuals: 2101
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36698
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3598
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2264
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variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6330
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 387
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variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 9.75e1
variant carriers: 6

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.09928075630516e-4
allele num: 63678
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11178
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e-1

FS
type: SiteQuality
SIO_000300: 3.376e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 9.16e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.2e0

DP
type: SiteQuality
SIO_000300: 1.388889e6

MQRankSum
type: SiteQuality
SIO_000300: -4.21e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

VQSLOD
type: SiteQuality
SIO_000300: -2.976e-1

GenotypeQuality
all individuals: 613
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2107
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 595
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variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
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GenotypeQuality
all individuals: 446
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1569
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 858
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6370
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 5
allele frequency: 4.466678577809541e-4
allele num: 11194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14592
num of homozygotes: 0

African
type: Population
allele count: 19
allele frequency: 2.05761316872428e-3
allele num: 9234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8362
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63722
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.74e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.81e-1

DP
type: SiteQuality
SIO_000300: 1.392977e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.223e1

GenotypeQuality
all individuals: 2114
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1091
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6373
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3403
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 573
bin: 5.25e1
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GenotypeQuality
all individuals: 593
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36515
bin: 6.25e1
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GenotypeQuality
all individuals: 2277
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.135091074395711e-5
allele num: 63794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8360
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.462691895751518e-4
allele num: 11204
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 8.883422167555009e-4
allele num: 14634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.5e-2

FS
type: SiteQuality
SIO_000300: 1.351e0

MQRankSum
type: SiteQuality
SIO_000300: 1.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.816e0

DP
type: SiteQuality
SIO_000300: 1.397239e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.914e1

QD
type: SiteQuality
SIO_000300: 1.124e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

GenotypeQuality
all individuals: 971
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 9.25e1
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GenotypeQuality
all individuals: 2333
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2189
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 8.75e1
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GenotypeQuality
all individuals: 1563
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 318
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37540
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6228
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.077586206896552e-4
allele num: 9280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.485e0

FS
type: SiteQuality
SIO_000300: 2.486e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

DP
type: SiteQuality
SIO_000300: 1.408105e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

QD
type: SiteQuality
SIO_000300: 1.876e1

MQRankSum
type: SiteQuality
SIO_000300: 9.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.29e-1

GenotypeQuality
all individuals: 485
bin: 9.25e1
variant carriers: 232

GenotypeQuality
all individuals: 394
bin: 5.75e1
variant carriers: 102

GenotypeQuality
all individuals: 25372
bin: 6.25e1
variant carriers: 179

GenotypeQuality
all individuals: 384
bin: 8.75e1
variant carriers: 125

GenotypeQuality
all individuals: 1848
bin: 2.25e1
variant carriers: 27

GenotypeQuality
all individuals: 105
bin: 1.75e1
variant carriers: 26

GenotypeQuality
all individuals: 633
bin: 2.75e1
variant carriers: 44

GenotypeQuality
all individuals: 130
bin: 2.5e0
variant carriers: 14

GenotypeQuality
all individuals: 20566
bin: 9.75e1
variant carriers: 20079

GenotypeQuality
all individuals: 156
bin: 7.5e0
variant carriers: 26

GenotypeQuality
all individuals: 388
bin: 4.75e1
variant carriers: 107

GenotypeQuality
all individuals: 1349
bin: 7.75e1
variant carriers: 221

GenotypeQuality
all individuals: 700
bin: 3.25e1
variant carriers: 46

GenotypeQuality
all individuals: 488
bin: 3.75e1
variant carriers: 57

South Asian
type: Population
allele count: 4558
allele frequency: 2.922169508911399e-1
allele num: 15598
num of homozygotes: 668

African
type: Population
allele count: 1762
allele frequency: 1.871680475886977e-1
allele num: 9414
num of homozygotes: 161

European (Finnish)
type: Population
allele count: 1446
allele frequency: 2.283638660770688e-1
allele num: 6332
num of homozygotes: 167

European (Non-Finnish)
type: Population
allele count: 10301
allele frequency: 1.591969832782122e-1
allele num: 64706
num of homozygotes: 803

Latino
type: Population
allele count: 3656
allele frequency: 3.235398230088495e-1
allele num: 11300
num of homozygotes: 595

East Asian
type: Population
allele count: 2874
allele frequency: 3.403600189483657e-1
allele num: 8444
num of homozygotes: 479

Other
type: Population
allele count: 172
allele frequency: 1.981566820276498e-1
allele num: 868
num of homozygotes: 17

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.977e0

VQSLOD
type: SiteQuality
SIO_000300: 1.56e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.32e-2

DP
type: SiteQuality
SIO_000300: 1.689545e6

QD
type: SiteQuality
SIO_000300: 1.529e1

MQ
type: SiteQuality
SIO_000300: 5.878e1

FS
type: SiteQuality
SIO_000300: 5.89e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 365
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1118
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36229
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 618
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 710
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538935056940597e-5
allele num: 64980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6384
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15750
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-1

FS
type: SiteQuality
SIO_000300: 4.074e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.835e1

DP
type: SiteQuality
SIO_000300: 1.652692e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.393e0

VQSLOD
type: SiteQuality
SIO_000300: -8.203e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.01e-1

QD
type: SiteQuality
SIO_000300: 1.29e1

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8338
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2826
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36537
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9470
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.073896471166851e-5
allele num: 65064
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.11e-1

FS
type: SiteQuality
SIO_000300: 7.721e0

VQSLOD
type: SiteQuality
SIO_000300: -1.64e0

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

QD
type: SiteQuality
SIO_000300: 1.534e1

MQ
type: SiteQuality
SIO_000300: 5.813e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.658639e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.463e0

GenotypeQuality
all individuals: 1121
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 347
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8429
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2629
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2862
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.994721659608421e-4
allele num: 65172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.23e-1

FS
type: SiteQuality
SIO_000300: 1.226e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

DP
type: SiteQuality
SIO_000300: 1.663107e6

VQSLOD
type: SiteQuality
SIO_000300: 3.98e-1

MQ
type: SiteQuality
SIO_000300: 5.855e1

QD
type: SiteQuality
SIO_000300: 2.47e1

GenotypeQuality
all individuals: 113
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 9.75e1
variant carriers: 304

GenotypeQuality
all individuals: 340
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 657
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 600
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8427
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37435
bin: 6.25e1
variant carriers: 2

African
type: Population
allele count: 8
allele frequency: 8.405127127547804e-4
allele num: 9518
num of homozygotes: 0

South Asian
type: Population
allele count: 24
allele frequency: 1.496072808876699e-3
allele num: 16042
num of homozygotes: 1

Latino
type: Population
allele count: 8
allele frequency: 6.996676578625153e-4
allele num: 11434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 183
allele frequency: 2.802450229709035e-3
allele num: 65300
num of homozygotes: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.17096018735363e-4
allele num: 8540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 85
allele frequency: 1.320696084524549e-2
allele num: 6436
num of homozygotes: 1

Other
type: Population
allele count: 4
allele frequency: 4.5662100456621e-3
allele num: 876
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.674342e6

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 1.217e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

QD
type: SiteQuality
SIO_000300: 1.185e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.871e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.095e0

GenotypeQuality
all individuals: 1081
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1428
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2879
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.736676568233443e-5
allele num: 11446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.72e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.905e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.47e0

MQ
type: SiteQuality
SIO_000300: 5.868e1

QD
type: SiteQuality
SIO_000300: 9.42e0

DP
type: SiteQuality
SIO_000300: 1.678404e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 369
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1419
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1177
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8683
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522950869604947e-5
allele num: 65662
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6468
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.045369015262388e-4
allele num: 9566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16238
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.48e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

QD
type: SiteQuality
SIO_000300: 9.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.65e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.112e0

MQ
type: SiteQuality
SIO_000300: 5.874e1

DP
type: SiteQuality
SIO_000300: 1.688476e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 488
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8717
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38756
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2596
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16276
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522162688748173e-5
allele num: 65696
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.717e1

MQRankSum
type: SiteQuality
SIO_000300: 1.66e0

FS
type: SiteQuality
SIO_000300: 2.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -8.45e-1

DP
type: SiteQuality
SIO_000300: 1.690253e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.59e0

QD
type: SiteQuality
SIO_000300: 5.86e0

GenotypeQuality
all individuals: 2568
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2863
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 9.75e1
variant carriers: 152

GenotypeQuality
all individuals: 477
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1115
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 5
allele frequency: 4.359958144401814e-4
allele num: 11468
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.136762860727729e-4
allele num: 9564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.081582200247219e-3
allele num: 6472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 136
allele frequency: 2.069574215540067e-3
allele num: 65714
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16274
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.129e1

FS
type: SiteQuality
SIO_000300: 3.351e0

MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.0e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

DP
type: SiteQuality
SIO_000300: 1.695085e6

GenotypeQuality
all individuals: 396
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2885
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1081
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 242
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8723
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.520912547528517e-5
allele num: 65750
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.61e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
type: SiteQuality
SIO_000300: 1.41e1

FS
type: SiteQuality
SIO_000300: 5.93e-1

MQ
type: SiteQuality
SIO_000300: 5.897e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.227e0

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

DP
type: SiteQuality
SIO_000300: 1.696367e6

GenotypeQuality
all individuals: 2885
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9566
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.166861143523921e-4
allele num: 8570
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 1.696367e6

QD
type: SiteQuality
SIO_000300: 1.41e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.227e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.6e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 5.897e1

FS
type: SiteQuality
SIO_000300: 5.93e-1

GenotypeQuality
all individuals: 592
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 24

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38942
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6478
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.087246921310791e-4
allele num: 9582
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.138952164009112e-3
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.830223880597014e-4
allele num: 8576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.431832689910934e-4
allele num: 65794
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.28e-1

QD
type: SiteQuality
SIO_000300: 1.075e1

FS
type: SiteQuality
SIO_000300: 1.838e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.412e0

MQ
type: SiteQuality
SIO_000300: 5.863e1

MQRankSum
type: SiteQuality
SIO_000300: -1.51e-1

DP
type: SiteQuality
SIO_000300: 1.700854e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

GenotypeQuality
all individuals: 8732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39304
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65820
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9586
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.85e-1

MQ
type: SiteQuality
SIO_000300: 5.917e1

FS
type: SiteQuality
SIO_000300: 1.094e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.494e0

MQRankSum
type: SiteQuality
SIO_000300: 8.32e-1

DP
type: SiteQuality
SIO_000300: 1.703565e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -6.42e-1

QD
type: SiteQuality
SIO_000300: 8.44e0

GenotypeQuality
all individuals: 593
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8761
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 906
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variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.518233990222573e-5
allele num: 65866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.946e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

MQ
type: SiteQuality
SIO_000300: 5.938e1

MQRankSum
type: SiteQuality
SIO_000300: 5.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.03e-1

DP
type: SiteQuality
SIO_000300: 1.707024e6

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

FS
type: SiteQuality
SIO_000300: 4.504e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.29e-1

GenotypeQuality
all individuals: 356
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8796
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variant carriers: 0

GenotypeQuality
all individuals: 2915
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65926
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.094588005850804e-5
allele num: 16408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.11e0

MQ
type: SiteQuality
SIO_000300: 5.646e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

FS
type: SiteQuality
SIO_000300: 1.347e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 1.708941e6

QD
type: SiteQuality
SIO_000300: 1.319e1

VQSLOD
type: SiteQuality
SIO_000300: -1.793e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513317191283293e-5
allele num: 66080
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.177e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.306e0

VQSLOD
type: SiteQuality
SIO_000300: -1.918e0

DP
type: SiteQuality
SIO_000300: 1.718766e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.519e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 1.007e0

MQRankSum
type: SiteQuality
SIO_000300: 9.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.89e-1

MQ
type: SiteQuality
SIO_000300: 5.798e1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513179796023364e-5
allele num: 66086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.649e0

QD
type: SiteQuality
SIO_000300: 7.3e-1

DP
type: SiteQuality
SIO_000300: 1.720496e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.504e0

VQSLOD
type: SiteQuality
SIO_000300: -2.089e0

MQ
type: SiteQuality
SIO_000300: 5.671e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 580
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 21
allele frequency: 1.824183460736623e-3
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.024254521260509e-5
allele num: 66132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

African
type: Population
allele count: 292
allele frequency: 3.019648397104447e-2
allele num: 9670
num of homozygotes: 5

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16494
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.414e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.75e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.09e-1

MQ
type: SiteQuality
SIO_000300: 5.794e1

DP
type: SiteQuality
SIO_000300: 1.729466e6

FS
type: SiteQuality
SIO_000300: 1.124e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.77e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1137
bin: 9.75e1
variant carriers: 124

GenotypeQuality
all individuals: 15
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 188
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GenotypeQuality
all individuals: 1407
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.067397146991937e-4
allele num: 9674
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.473428273706148e-4
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 119
allele frequency: 1.797854660824898e-3
allele num: 66190
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.525785779676533e-4
allele num: 6554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.154e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.55e-1

MQ
type: SiteQuality
SIO_000300: 5.08e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.49e-1

DP
type: SiteQuality
SIO_000300: 1.733666e6

QD
type: SiteQuality
SIO_000300: 4.85e0

VQSLOD
type: SiteQuality
SIO_000300: 2.2e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.644e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 511
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
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GenotypeQuality
all individuals: 150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2573
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8939
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2936
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40609
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515886490419597e-5
allele num: 65968
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.033e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

QD
type: SiteQuality
SIO_000300: 1.365e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

DP
type: SiteQuality
SIO_000300: 1.730453e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.64e0

VQSLOD
type: SiteQuality
SIO_000300: -1.234e-1

FS
type: SiteQuality
SIO_000300: 1.282e0

MQ
type: SiteQuality
SIO_000300: 5.881e1

GenotypeQuality
all individuals: 118
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 584
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.547108039287013e-5
allele num: 65976
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.123595505617978e-3
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

FS
type: SiteQuality
SIO_000300: 2.921e0

DP
type: SiteQuality
SIO_000300: 1.73114e6

VQSLOD
type: SiteQuality
SIO_000300: -9.805e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.084e0

QD
type: SiteQuality
SIO_000300: 1.335e1

MQ
type: SiteQuality
SIO_000300: 5.844e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2964
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66284
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.322880371660859e-4
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.42e-1

DP
type: SiteQuality
SIO_000300: 1.739637e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.524e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

QD
type: SiteQuality
SIO_000300: 1.273e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.043e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 52
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variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 94
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variant carriers: 0

GenotypeQuality
all individuals: 9034
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variant carriers: 0

GenotypeQuality
all individuals: 1423
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2967
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.033546518643659e-5
allele num: 66296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.740559e6

QD
type: SiteQuality
SIO_000300: 1.43e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.12e-1

FS
type: SiteQuality
SIO_000300: 1.912e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.582e0

MQ
type: SiteQuality
SIO_000300: 5.63e1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

GenotypeQuality
all individuals: 2603
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 101
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GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 590
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variant carriers: 0

GenotypeQuality
all individuals: 109
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variant carriers: 0

GenotypeQuality
all individuals: 1024
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variant carriers: 2

GenotypeQuality
all individuals: 439
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 591
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variant carriers: 0

GenotypeQuality
all individuals: 9033
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016500256402522e-5
allele num: 66302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.685e1

VQSLOD
type: SiteQuality
SIO_000300: -1.244e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.004e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

DP
type: SiteQuality
SIO_000300: 1.741143e6

FS
type: SiteQuality
SIO_000300: 6.919e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 1.16e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

GenotypeQuality
all individuals: 9035
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 592
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2964
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 9.75e1
variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.043213633597079e-4
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

FS
type: SiteQuality
SIO_000300: 4.503e0

MQRankSum
type: SiteQuality
SIO_000300: 9.0e-2

MQ
type: SiteQuality
SIO_000300: 5.685e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.77e-1

DP
type: SiteQuality
SIO_000300: 1.741653e6

VQSLOD
type: SiteQuality
SIO_000300: -1.346e0

QD
type: SiteQuality
SIO_000300: 1.344e1

GenotypeQuality
all individuals: 66
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1025
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9065
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66334
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73370319001387e-4
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.742964e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 5.681e1

QD
type: SiteQuality
SIO_000300: 1.089e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.287e0

MQRankSum
type: SiteQuality
SIO_000300: 9.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

VQSLOD
type: SiteQuality
SIO_000300: -1.98e0

GenotypeQuality
all individuals: 1025
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 592
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9718
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507704369327262e-5
allele num: 66326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.287e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.187e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.12e0

MQ
type: SiteQuality
SIO_000300: 5.581e1

MQRankSum
type: SiteQuality
SIO_000300: 2.28e0

DP
type: SiteQuality
SIO_000300: 1.743617e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.182e0

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1424
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 2975
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
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variant carriers: 0

GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 595
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GenotypeQuality
all individuals: 2601
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GenotypeQuality
all individuals: 54
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GenotypeQuality
all individuals: 1077
bin: 9.75e1
variant carriers: 63

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9044
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.040437823046519e-4
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.08641975308642e-4
allele num: 9720
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733402669440111e-4
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 55
allele frequency: 8.292874159404119e-4
allele num: 66322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.322880371660859e-4
allele num: 8610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.662e1

QD
type: SiteQuality
SIO_000300: 1.193e1

VQSLOD
type: SiteQuality
SIO_000300: -1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.77e-1

FS
type: SiteQuality
SIO_000300: 1.75e0

DP
type: SiteQuality
SIO_000300: 1.745407e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.259e0

GenotypeQuality
all individuals: 1017
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41174
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 597
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9046
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66322
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.029018316526034e-4
allele num: 9718
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.664e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.431e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 9.9e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.172e0

MQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.64e-1

DP
type: SiteQuality
SIO_000300: 1.74398e6

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2974
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1427
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2603
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9041
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41061
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016409266409266e-5
allele num: 66304
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 7.11e0

VQSLOD
type: SiteQuality
SIO_000300: -1.193e0

MQ
type: SiteQuality
SIO_000300: 5.576e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -9.77e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.121e0

FS
type: SiteQuality
SIO_000300: 2.057e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

DP
type: SiteQuality
SIO_000300: 1.7435e6

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1794
bin: 9.75e1
variant carriers: 908

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1371
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 94
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 40631
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 561
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2535
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2930
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 53
allele frequency: 4.593517074016294e-3
allele num: 11538
num of homozygotes: 0

African
type: Population
allele count: 805
allele frequency: 8.273381294964029e-2
allele num: 9730
num of homozygotes: 39

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 90
allele frequency: 1.357466063348416e-3
allele num: 66300
num of homozygotes: 1

Other
type: Population
allele count: 7
allele frequency: 7.865168539325843e-3
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.559270516717325e-4
allele num: 6580
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.82e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

FS
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.691e1

DP
type: SiteQuality
SIO_000300: 1.770558e6

QD
type: SiteQuality
SIO_000300: 1.288e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.4e-2

GenotypeQuality
all individuals: 1403
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2983
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9066
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.016773259321829e-5
allele num: 66296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.933610677760444e-4
allele num: 11538
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.024e-1

DP
type: SiteQuality
SIO_000300: 1.751723e6

MQRankSum
type: SiteQuality
SIO_000300: 3.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.07e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.33e-1

FS
type: SiteQuality
SIO_000300: 3.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.07e-1

QD
type: SiteQuality
SIO_000300: 1.116e1

MQ
type: SiteQuality
SIO_000300: 5.788e1

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2978
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41122
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9060
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 567
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.028171910343409e-4
allele num: 9726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.313e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -5.01e-1

FS
type: SiteQuality
SIO_000300: 2.4549e1

DP
type: SiteQuality
SIO_000300: 1.751601e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.37e0

QD
type: SiteQuality
SIO_000300: 7.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.685e1

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 569
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9060
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2978
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41127
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 918
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1404
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508022680661117e-5
allele num: 66312
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.4586e1

VQSLOD
type: SiteQuality
SIO_000300: -5.43e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.68e-1

MQ
type: SiteQuality
SIO_000300: 5.669e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

QD
type: SiteQuality
SIO_000300: 1.054e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.127e0

DP
type: SiteQuality
SIO_000300: 1.750825e6

GenotypeQuality
all individuals: 565
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8979
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 919
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 2958
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40564
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 6
allele frequency: 6.165228113440197e-4
allele num: 9732
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16414
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.82e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.224e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

VQSLOD
type: SiteQuality
SIO_000300: -1.487e0

MQ
type: SiteQuality
SIO_000300: 5.801e1

DP
type: SiteQuality
SIO_000300: 1.747574e6

FS
type: SiteQuality
SIO_000300: 5.968e0

QD
type: SiteQuality
SIO_000300: 1.152e1

GenotypeQuality
all individuals: 2567
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40015
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8873
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 916
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 562
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50993537476596e-5
allele num: 66228
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 8.080000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

QD
type: SiteQuality
SIO_000300: 1.105e1

FS
type: SiteQuality
SIO_000300: 5.438e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 1.742992e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.45e-1

GenotypeQuality
all individuals: 15
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8873
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2567
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2930
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40015
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1389
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66228
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

South Asian
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allele frequency: 6.10798924993892e-5
allele num: 16372
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.105e1

InbreedingCoeff
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ReadPosRankSum
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FS
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DP
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MQRankSum
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SIO_000300: 7.36e-1

ClippingRankSum
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MQ
type: SiteQuality
SIO_000300: 5.97e1

VQSLOD
type: SiteQuality
SIO_000300: 8.080000000000001e-1

BaseQRankSum
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SIO_000300: 7.25e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.50952510340247e-5
allele num: 66246
num of homozygotes: 0

Latino
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allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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VQSLOD
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DP
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FS
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
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SIO_000300: 5.801e1

MQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66244
num of homozygotes: 0

South Asian
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allele frequency: 6.124448799608035e-5
allele num: 16328
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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DP
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InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
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BaseQRankSum
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VQSLOD
type: SiteQuality
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MQRankSum
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MQ
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
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allele frequency: 2.055498458376156e-4
allele num: 9730
num of homozygotes: 0

Latino
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allele count: 3
allele frequency: 2.60235947258848e-4
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.020235578375113e-5
allele num: 66220
num of homozygotes: 0

Other
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allele num: 892
num of homozygotes: 0

South Asian
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allele count: 553
allele frequency: 3.399311531841653e-2
allele num: 16268
num of homozygotes: 11

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.99e-1

MQRankSum
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SIO_000300: 2.09e-1

MQ
type: SiteQuality
SIO_000300: 5.764e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.98e-2

QD
type: SiteQuality
SIO_000300: 1.403e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.400000000000001e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510117789187557e-5
allele num: 66220
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.403e1

ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.764e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.98e-2

MQRankSum
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SIO_000300: 2.09e-1

ClippingRankSum
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SIO_000300: -3.18e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.208e0

VQSLOD
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SIO_000300: 2.36e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.519987840097279e-5
allele num: 65790
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele count: 0
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

MQRankSum
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VQSLOD
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MQ
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DP
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 9624
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.519433555170632e-5
allele num: 65814
num of homozygotes: 0

Other
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MQ
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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QD
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DP
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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South Asian
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European (Non-Finnish)
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Latino
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European (Finnish)
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VQSLOD
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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FS
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DP
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InbreedingCoeff
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ClippingRankSum
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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Latino
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African
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European (Finnish)
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European (Non-Finnish)
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Other
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ReadPosRankSum
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FS
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QD
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DP
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.526577718071627e-4
allele num: 65506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15242
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.285e1

DP
type: SiteQuality
SIO_000300: 1.806283e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.585e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.139e0

QD
type: SiteQuality
SIO_000300: 1.427e1

GenotypeQuality
all individuals: 6279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12559
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14168
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.548467017652524e-4
allele num: 6458
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.62e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.238e0

MQRankSum
type: SiteQuality
SIO_000300: 6.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.137e0

FS
type: SiteQuality
SIO_000300: 1.2882e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.003e0

QD
type: SiteQuality
SIO_000300: 6.23e0

MQ
type: SiteQuality
SIO_000300: 5.095e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

DP
type: SiteQuality
SIO_000300: 1.838677e6

GenotypeQuality
all individuals: 667
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8430
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9154
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.913752913752914e-4
allele num: 6864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.941521376150351e-5
allele num: 51506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4966
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.137e0

MQ
type: SiteQuality
SIO_000300: 5.242e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.83e-2

QD
type: SiteQuality
SIO_000300: 1.152e1

FS
type: SiteQuality
SIO_000300: 1.037e0

VQSLOD
type: SiteQuality
SIO_000300: -8.155e-1

DP
type: SiteQuality
SIO_000300: 1.879848e6

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.769e0

GenotypeQuality
all individuals: 11747
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4690
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 500
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variant carriers: 1

GenotypeQuality
all individuals: 1709
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variant carriers: 0

GenotypeQuality
all individuals: 775
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2268
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47538
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.629195177582274e-4
allele num: 6138
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.787e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.76e-1

FS
type: SiteQuality
SIO_000300: 3.641e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.18e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.241e0

MQRankSum
type: SiteQuality
SIO_000300: 3.15e-1

MQ
type: SiteQuality
SIO_000300: 4.697e1

DP
type: SiteQuality
SIO_000300: 1.879269e6

QD
type: SiteQuality
SIO_000300: 1.024e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.73e-1

GenotypeQuality
all individuals: 3416
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10041
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5235
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 497
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variant carriers: 2

GenotypeQuality
all individuals: 2153
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4527
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GenotypeQuality
all individuals: 1528
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.408004936965529e-5
allele num: 45372
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7994
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.692e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-2

DP
type: SiteQuality
SIO_000300: 1.882897e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.76e-2

QD
type: SiteQuality
SIO_000300: 1.116e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

MQ
type: SiteQuality
SIO_000300: 5.265e1

FS
type: SiteQuality
SIO_000300: 9.148e0

VQSLOD
type: SiteQuality
SIO_000300: -6.67e-1

GenotypeQuality
all individuals: 2138
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1119
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GenotypeQuality
all individuals: 1404
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variant carriers: 0

GenotypeQuality
all individuals: 2484
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GenotypeQuality
all individuals: 1442
bin: 3.75e1
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GenotypeQuality
all individuals: 1846
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variant carriers: 0

GenotypeQuality
all individuals: 2413
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variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 9.25e1
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GenotypeQuality
all individuals: 2016
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6262
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.600819619645258e-5
allele num: 62468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11104
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9260
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.388286e6

MQRankSum
type: SiteQuality
SIO_000300: -1.908e0

FS
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.29e-2

MQ
type: SiteQuality
SIO_000300: 5.13e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

QD
type: SiteQuality
SIO_000300: 9.82e0

GenotypeQuality
all individuals: 261
bin: 7.5e0
variant carriers: 148

GenotypeQuality
all individuals: 1442
bin: 3.75e1
variant carriers: 1294

GenotypeQuality
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bin: 5.25e1
variant carriers: 1820

GenotypeQuality
all individuals: 4151
bin: 6.25e1
variant carriers: 2254

GenotypeQuality
all individuals: 1598
bin: 4.75e1
variant carriers: 1567

GenotypeQuality
all individuals: 2898
bin: 6.75e1
variant carriers: 2389

GenotypeQuality
all individuals: 1097
bin: 2.75e1
variant carriers: 896

GenotypeQuality
all individuals: 1119
bin: 2.25e1
variant carriers: 715

GenotypeQuality
all individuals: 29218
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variant carriers: 29143

GenotypeQuality
all individuals: 2016
bin: 5.75e1
variant carriers: 2008

East Asian
type: Population
allele count: 3973
allele frequency: 4.744447098160974e-1
allele num: 8374
num of homozygotes: 894

European (Finnish)
type: Population
allele count: 5079
allele frequency: 8.110827211753433e-1
allele num: 6262
num of homozygotes: 2039

Other
type: Population
allele count: 607
allele frequency: 7.5875e-1
allele num: 800
num of homozygotes: 229

African
type: Population
allele count: 8183
allele frequency: 8.836933045356371e-1
allele num: 9260
num of homozygotes: 3611

South Asian
type: Population
allele count: 9141
allele frequency: 7.3081228014071e-1
allele num: 12508
num of homozygotes: 3366

Latino
type: Population
allele count: 7939
allele frequency: 7.149675792507204e-1
allele num: 11104
num of homozygotes: 2772

European (Non-Finnish)
type: Population
allele count: 46338
allele frequency: 7.417877953512199e-1
allele num: 62468
num of homozygotes: 17042

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.29e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.908e0

MQ
type: SiteQuality
SIO_000300: 5.13e1

QD
type: SiteQuality
SIO_000300: 9.82e0

FS
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

DP
type: SiteQuality
SIO_000300: 1.388286e6

GenotypeQuality
all individuals: 13475
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 208
bin: 9.75e1
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GenotypeQuality
all individuals: 803
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GenotypeQuality
all individuals: 258
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GenotypeQuality
all individuals: 1242
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GenotypeQuality
all individuals: 63
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GenotypeQuality
all individuals: 244
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GenotypeQuality
all individuals: 68
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GenotypeQuality
all individuals: 337
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GenotypeQuality
all individuals: 1426
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variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 2.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.650982334489021e-4
allele num: 12114
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3692
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.092e-1

MQ
type: SiteQuality
SIO_000300: 5.224e1

QD
type: SiteQuality
SIO_000300: 4.39e0

VQSLOD
type: SiteQuality
SIO_000300: 2.811e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.722e0

MQRankSum
type: SiteQuality
SIO_000300: 9.409999999999999e-1

DP
type: SiteQuality
SIO_000300: 5.9446e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 1.108e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.65e-1