7-105645158-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105645158
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105645158
    reference: chr 7
allele count: 1
allele frequency: 8.412693071305987e-6
allele num: 118868
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000466351
  gene symbol: CDHR3
  hgvsc: ENST00000466351.1:n.250T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000471910
  gene symbol: CDHR3
  hgvsc: ENST00000471910.1:n.279T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1475+25T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.788+25T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1052+25T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*304+25T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.203+25T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*304+25T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1052+25T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.326+25T>C
  variant of: http://identifiers.org/hgnc/26308
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5859
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3541
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37284
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1743
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-105645176-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105645176
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105645176
    reference: chr 7
allele count: 1
allele frequency: 8.512087163772557e-6
allele num: 117480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1052+43G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1052+43G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.326+43G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1475+43G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000466351
  gene symbol: CDHR3
  hgvsc: ENST00000466351.1:n.268G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*304+43G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000471910
  gene symbol: CDHR3
  hgvsc: ENST00000471910.1:n.297G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*304+43G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.203+43G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.788+43G>A
  variant of: http://identifiers.org/hgnc/26308
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23587
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7665
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

7-105645183-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105645183
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105645183
    reference: chr 7
allele count: 1
allele frequency: 8.68266592574584e-6
allele num: 115172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.326+50C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*304+50C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.203+50C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.788+50C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*304+50C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000466351
  gene symbol: CDHR3
  hgvsc: ENST00000466351.1:n.275C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1052+50C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1052+50C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000471910
  gene symbol: CDHR3
  hgvsc: ENST00000471910.1:n.304C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1475+50C>T
  variant of: http://identifiers.org/hgnc/26308
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13407
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8670
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP

7-105653259-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653259
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653259
    reference: chr 7
allele count: 1
allele frequency: 9.011931797700155e-6
allele num: 110964
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1476-47C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.789-47C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.327-47C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1053-47C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.204-47C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*305-47C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*305-47C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1053-47C>G
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1484
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2779
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum

7-105653259-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653259
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653259
    reference: chr 7
allele count: 1
allele frequency: 9.011931797700155e-6
allele num: 110964
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.327-47C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1053-47C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*305-47C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.204-47C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.789-47C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1053-47C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1476-47C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*305-47C>T
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3004
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3896
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1266
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 253
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2779
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7941
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

7-105653260-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653260
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653260
    reference: chr 7
allele count: 7
allele frequency: 6.30596544330937e-5
allele num: 111006
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*305-46G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1053-46G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.789-46G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1476-46G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.204-46G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*305-46G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.327-46G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1053-46G>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1842
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3895
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7946
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2781
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/7-105653266-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653266
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653266
    reference: chr 7
allele count: 1
allele frequency: 9.002682799474243e-6
allele num: 111078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1053-40C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.789-40C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1053-40C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1476-40C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.204-40C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*305-40C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.327-40C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*305-40C>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14516
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20071
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2786
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7949
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9799
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 625
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

7-105653272-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653272
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653272
    reference: chr 7
allele count: 1
allele frequency: 8.991673710144407e-6
allele num: 111214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.327-34T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1053-34T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*305-34T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.789-34T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*305-34T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1053-34T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1476-34T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.204-34T>C
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7956
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2793
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2704
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3898
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

7-105653274-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653274
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653274
    reference: chr 7
allele count: 1
allele frequency: 8.991350320991206e-6
allele num: 111218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*305-32G>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.327-32G>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1053-32G>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.789-32G>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.204-32G>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1476-32G>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1053-32G>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*305-32G>C
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3100
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20080
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14522
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3899
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24445
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

7-105653281-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653281
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653281
    reference: chr 7
allele count: 1
allele frequency: 8.968931620865323e-6
allele num: 111496
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1053-25A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1053-25A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.789-25A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.327-25A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*305-25A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*305-25A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1476-25A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.204-25A>G
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20098
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3103
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3286
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 906
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

7-105653284-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653284
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653284
    reference: chr 7
allele count: 1
allele frequency: 8.965072079179517e-6
allele num: 111544
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*305-22C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.327-22C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.789-22C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1053-22C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.204-22C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*305-22C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1476-22C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1053-22C>G
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14522
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2797
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

7-105653285-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653285
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653285
    reference: chr 7
allele count: 1
allele frequency: 8.952230895939268e-6
allele num: 111704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1053-21T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*305-21T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1476-21T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.204-21T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1053-21T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.789-21T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.327-21T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*305-21T>C
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14523
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5849
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20108
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 24531
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9799
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

7-105653306-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653306
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653306
    reference: chr 7
allele count: 4
allele frequency: 3.526155256615949e-5
allele num: 113438
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1053C>T
  hgvsp: ENST00000542731.1:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.204C>T
  hgvsp: ENST00000343407.5:c.204C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1053C>T
  hgvsp: ENST00000317716.9:c.1053C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.789C>T
  hgvsp: ENST00000478080.1:c.789C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1476C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*305C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*305C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.327C>T
  hgvsp: ENST00000466045.1:c.327C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4651
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14529
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20162
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7993
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2951
  bin: 8.25e1
  variant carriers: 0
hgvs: c.1053C>T
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

7-105653311-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653311
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653311
    reference: chr 7
allele count: 1
allele frequency: 8.761631065239105e-6
allele num: 114134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*310T>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.332T>G
  hgvsp: ENSP00000419017.1:p.Met111Arg
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*310T>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.794T>G
  hgvsp: ENSP00000417771.1:p.Met265Arg
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1058T>G
  hgvsp: ENSP00000325954.9:p.Met353Arg
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.209T>G
  hgvsp: ENSP00000341510.5:p.Met70Arg
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1481T>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1058T>G
  hgvsp: ENSP00000439766.1:p.Met353Arg
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14533
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4924
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8004
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9795
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Met353Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

7-105653313-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653313
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653313
    reference: chr 7
allele count: 3
allele frequency: 2.624258646932242e-5
allele num: 114318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1483G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1060G>A
  hgvsp: ENSP00000439766.1:p.Val354Met
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*312G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1060G>A
  hgvsp: ENSP00000325954.9:p.Val354Met
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.796G>A
  hgvsp: ENSP00000417771.1:p.Val266Met
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.211G>A
  hgvsp: ENSP00000341510.5:p.Val71Met
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.334G>A
  hgvsp: ENSP00000419017.1:p.Val112Met
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*312G>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14535
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20188
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2807
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3064
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3906
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val354Met
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum

7-105653317-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653317
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653317
    reference: chr 7
allele count: 13
allele frequency: 1.131202032683037e-4
allele num: 114922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.338C>T
  hgvsp: ENSP00000419017.1:p.Pro113Leu
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*316C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1064C>T
  hgvsp: ENSP00000325954.9:p.Pro355Leu
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.215C>T
  hgvsp: ENSP00000341510.5:p.Pro72Leu
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1064C>T
  hgvsp: ENSP00000439766.1:p.Pro355Leu
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*316C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1487C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.800C>T
  hgvsp: ENSP00000417771.1:p.Pro267Leu
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20232
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14540
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2808
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1846
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25622
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Pro355Leu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

7-105653322-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653322
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653322
    reference: chr 7
allele count: 2
allele frequency: 1.723365387929549e-5
allele num: 116052
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.805A>G
  hgvsp: ENSP00000417771.1:p.Arg269Gly
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1492A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.343A>G
  hgvsp: ENSP00000419017.1:p.Arg115Gly
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.220A>G
  hgvsp: ENSP00000341510.5:p.Arg74Gly
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1069A>G
  hgvsp: ENSP00000439766.1:p.Arg357Gly
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1069A>G
  hgvsp: ENSP00000325954.9:p.Arg357Gly
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*321A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*321A>G
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14550
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20301
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2809
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9781
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3912
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg357Gly
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-105653326-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653326
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653326
    reference: chr 7
allele count: 2
allele frequency: 1.71626677650774e-5
allele num: 116532
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.224C>A
  hgvsp: ENSP00000341510.5:p.Thr75Lys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*325C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1073C>A
  hgvsp: ENSP00000439766.1:p.Thr358Lys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1073C>A
  hgvsp: ENSP00000325954.9:p.Thr358Lys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.347C>A
  hgvsp: ENSP00000419017.1:p.Thr116Lys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.809C>A
  hgvsp: ENSP00000417771.1:p.Thr270Lys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1496C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*325C>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14558
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20360
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26398
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr358Lys
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

7-105653327-AGCCAAGGGGACGTTGCTTCTTGACCTAAACAAGTTCTGCTTTGATGATGACAGTGAGGCACCAAACAACAGATTCAACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653327
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653248
    reference: chr 7
allele count: 1
allele frequency: 8.565457224106622e-6
allele num: 116748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsp: ENSP00000341510.5:p.Ala76SerfsTer25
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsp: ENSP00000439766.1:p.Ala359SerfsTer25
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsp: ENSP00000325954.9:p.Ala359SerfsTer25
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsp: ENSP00000419017.1:p.Ala117SerfsTer25
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsp: ENSP00000417771.1:p.Ala271SerfsTer25
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20377
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14551
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2815
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26509
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala359SerfsTer25
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: AGCCAAGGGGACGTTGCTTCTTGACCTAAACAAGTTCTGCTTTGATGATGACAGTGAGGCACCAAACAACAGATTCAACT
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

7-105653328-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653328
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653328
    reference: chr 7
allele count: 1
allele frequency: 8.55636936135259e-6
allele num: 116872
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1075G>A
  hgvsp: ENSP00000325954.9:p.Ala359Thr
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.349G>A
  hgvsp: ENSP00000419017.1:p.Ala117Thr
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*327G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1075G>A
  hgvsp: ENSP00000439766.1:p.Ala359Thr
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*327G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.811G>A
  hgvsp: ENSP00000417771.1:p.Ala271Thr
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.226G>A
  hgvsp: ENSP00000341510.5:p.Ala76Thr
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1498G>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14553
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala359Thr
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/7-105653329-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653329
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653329
    reference: chr 7
allele count: 1
allele frequency: 8.550077805708033e-6
allele num: 116958
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1076C>A
  hgvsp: ENSP00000439766.1:p.Ala359Asp
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*328C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1076C>A
  hgvsp: ENSP00000325954.9:p.Ala359Asp
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1499C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.350C>A
  hgvsp: ENSP00000419017.1:p.Ala117Asp
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.227C>A
  hgvsp: ENSP00000341510.5:p.Ala76Asp
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.812C>A
  hgvsp: ENSP00000417771.1:p.Ala271Asp
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*328C>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6318
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3919
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26634
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ala359Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

7-105653330-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653330
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653330
    reference: chr 7
allele count: 1
allele frequency: 8.529948649709128e-6
allele num: 117234
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1077C>T
  hgvsp: ENST00000317716.9:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1077C>T
  hgvsp: ENST00000542731.1:c.1077C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.351C>T
  hgvsp: ENST00000466045.1:c.351C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1500C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*329C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.228C>T
  hgvsp: ENST00000343407.5:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*329C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.813C>T
  hgvsp: ENST00000478080.1:c.813C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6418
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20488
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1848
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala359Ala
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-105653338-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653338
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653338
    reference: chr 7
allele count: 2
allele frequency: 1.68967439974317e-5
allele num: 118366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.359C>T
  hgvsp: ENSP00000419017.1:p.Thr120Met
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1085C>T
  hgvsp: ENSP00000439766.1:p.Thr362Met
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1085C>T
  hgvsp: ENSP00000325954.9:p.Thr362Met
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.821C>T
  hgvsp: ENSP00000417771.1:p.Thr274Met
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.236C>T
  hgvsp: ENSP00000341510.5:p.Thr79Met
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*337C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*337C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1508C>T
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20684
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27594
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Thr362Met
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

7-105653339-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653339
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653339
    reference: chr 7
allele count: 2
allele frequency: 1.686170033386167e-5
allele num: 118612
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1086G>A
  hgvsp: ENST00000317716.9:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.237G>A
  hgvsp: ENST00000343407.5:c.237G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.360G>A
  hgvsp: ENST00000466045.1:c.360G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*338G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1086G>A
  hgvsp: ENST00000542731.1:c.1086G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*338G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1509G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.822G>A
  hgvsp: ENST00000478080.1:c.822G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7162
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1229
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3927
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1847
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr362Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

7-105653342-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653342
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653342
    reference: chr 7
allele count: 1
allele frequency: 8.401666890711118e-6
allele num: 119024
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.825G>T
  hgvsp: ENSP00000417771.1:p.Leu275Phe
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1089G>T
  hgvsp: ENSP00000439766.1:p.Leu363Phe
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1089G>T
  hgvsp: ENSP00000325954.9:p.Leu363Phe
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1512G>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.363G>T
  hgvsp: ENSP00000419017.1:p.Leu121Phe
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.240G>T
  hgvsp: ENSP00000341510.5:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*341G>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*341G>T
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14580
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5853
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7430
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 854
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu363Phe
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

7-105653348-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653348
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653348
    reference: chr 7
allele count: 1
allele frequency: 8.360924383799873e-6
allele num: 119604
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1518T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.369T>C
  hgvsp: ENST00000466045.1:c.369T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.831T>C
  hgvsp: ENST00000478080.1:c.831T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1095T>C
  hgvsp: ENST00000542731.1:c.1095T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*347T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.246T>C
  hgvsp: ENST00000343407.5:c.246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1095T>C
  hgvsp: ENST00000317716.9:c.1095T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*347T>C
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5851
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28610
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3929
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Leu365Leu
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

7-105653353-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653353
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653353
    reference: chr 7
allele count: 1
allele frequency: 8.340700952508049e-6
allele num: 119894
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.251T>C
  hgvsp: ENSP00000341510.5:p.Leu84Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1523T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1100T>C
  hgvsp: ENSP00000439766.1:p.Leu367Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1100T>C
  hgvsp: ENSP00000325954.9:p.Leu367Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*352T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.374T>C
  hgvsp: ENSP00000419017.1:p.Leu125Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.836T>C
  hgvsp: ENSP00000417771.1:p.Leu279Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*352T>C
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5852
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20987
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2953
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9773
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu367Pro
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

7-105653361-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653361
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653361
    reference: chr 7
allele count: 1
allele frequency: 8.313381218409152e-6
allele num: 120288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*360T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.259T>C
  hgvsp: ENSP00000341510.5:p.Phe87Leu
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.844T>C
  hgvsp: ENSP00000417771.1:p.Phe282Leu
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1531T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*360T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1108T>C
  hgvsp: ENSP00000439766.1:p.Phe370Leu
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.382T>C
  hgvsp: ENSP00000419017.1:p.Phe128Leu
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1108T>C
  hgvsp: ENSP00000325954.9:p.Phe370Leu
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Phe370Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ

7-105653364-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653364
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653364
    reference: chr 7
allele count: 1
allele frequency: 8.30923654734603e-6
allele num: 120348
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1111T>C
  hgvsp: ENSP00000325954.9:p.Cys371Arg
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*363T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*363T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.847T>C
  hgvsp: ENSP00000417771.1:p.Cys283Arg
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1111T>C
  hgvsp: ENSP00000439766.1:p.Cys371Arg
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.385T>C
  hgvsp: ENSP00000419017.1:p.Cys129Arg
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.262T>C
  hgvsp: ENSP00000341510.5:p.Cys88Arg
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1534T>C
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3105
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8131
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21065
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Cys371Arg
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

7-105653388-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653388
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653388
    reference: chr 7
allele count: 134
allele frequency: 1.112180870489028e-3
allele num: 120484
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1135C>T
  hgvsp: ENSP00000439766.1:p.Pro379Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1558C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.286C>T
  hgvsp: ENSP00000341510.5:p.Pro96Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*387C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*387C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.871C>T
  hgvsp: ENSP00000417771.1:p.Pro291Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1135C>T
  hgvsp: ENSP00000325954.9:p.Pro379Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.409C>T
  hgvsp: ENSP00000419017.1:p.Pro137Ser
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 9.75e1
  variant carriers: 131
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1289
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3935
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro379Ser
num of homozygotes: 1
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

7-105653392-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653392
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653392
    reference: chr 7
allele count: 34
allele frequency: 2.821670428893905e-4
allele num: 120496
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1139A>G
  hgvsp: ENSP00000325954.9:p.Asn380Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.290A>G
  hgvsp: ENSP00000341510.5:p.Asn97Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.413A>G
  hgvsp: ENSP00000419017.1:p.Asn138Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*391A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.875A>G
  hgvsp: ENSP00000417771.1:p.Asn292Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*391A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1139A>G
  hgvsp: ENSP00000439766.1:p.Asn380Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1562A>G
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14673
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8104
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3950
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn380Ser
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum

7-105653401-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653401
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653401
    reference: chr 7
allele count: 2
allele frequency: 1.660770929865644e-5
allele num: 120426
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1148T>G
  hgvsp: ENSP00000325954.9:p.Phe383Cys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.422T>G
  hgvsp: ENSP00000419017.1:p.Phe141Cys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.299T>G
  hgvsp: ENSP00000341510.5:p.Phe100Cys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*400T>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1571T>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.884T>G
  hgvsp: ENSP00000417771.1:p.Phe295Cys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*400T>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1148T>G
  hgvsp: ENSP00000439766.1:p.Phe383Cys
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21255
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29287
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2959
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Phe383Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

7-105653405-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653405
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653404
    reference: chr 7
allele count: 4
allele frequency: 3.322535094276933e-5
allele num: 120390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1154delT
  hgvsp: ENSP00000439766.1:p.Phe385SerfsTer25
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*406delT
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.890delT
  hgvsp: ENSP00000417771.1:p.Phe297SerfsTer25
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.305delT
  hgvsp: ENSP00000341510.5:p.Phe102SerfsTer25
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.428delT
  hgvsp: ENSP00000419017.1:p.Phe143SerfsTer25
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*406delT
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1154delT
  hgvsp: ENSP00000325954.9:p.Phe385SerfsTer25
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1577delT
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7943
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2855
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8275
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9636
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29207
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Phe385SerfsTer25
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: CT
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

7-105653412-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653412
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653412
    reference: chr 7
allele count: 1
allele frequency: 8.313104778372627e-6
allele num: 120292
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.433A>G
  hgvsp: ENSP00000419017.1:p.Met145Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*411A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.895A>G
  hgvsp: ENSP00000417771.1:p.Met299Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*411A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1582A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.310A>G
  hgvsp: ENSP00000341510.5:p.Met104Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1159A>G
  hgvsp: ENSP00000325954.9:p.Met387Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1159A>G
  hgvsp: ENSP00000439766.1:p.Met387Val
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3112
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7799
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5875
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8267
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Met387Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

7-105653415-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653415
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653415
    reference: chr 7
allele count: 1
allele frequency: 8.318637074501714e-6
allele num: 120212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.436C>T
  hgvsp: ENSP00000419017.1:p.Pro146Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1162C>T
  hgvsp: ENSP00000325954.9:p.Pro388Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1162C>T
  hgvsp: ENSP00000439766.1:p.Pro388Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*414C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.313C>T
  hgvsp: ENSP00000341510.5:p.Pro105Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.898C>T
  hgvsp: ENSP00000417771.1:p.Pro300Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1585C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*414C>T
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1064
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5876
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9634
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro388Ser
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

7-105653422-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653422
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653422
    reference: chr 7
allele count: 7
allele frequency: 5.838880269589443e-5
allele num: 119886
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.443G>A
  hgvsp: ENSP00000419017.1:p.Gly148Glu
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1169G>A
  hgvsp: ENSP00000325954.9:p.Gly390Glu
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1169G>A
  hgvsp: ENSP00000439766.1:p.Gly390Glu
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.905G>A
  hgvsp: ENSP00000417771.1:p.Gly302Glu
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*421G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.320G>A
  hgvsp: ENSP00000341510.5:p.Gly107Glu
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1592G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*421G>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14693
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1929
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 28615
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9633
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly390Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

7-105653426-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653426
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653426
    reference: chr 7
allele count: 1
allele frequency: 8.367920739054759e-6
allele num: 119504
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1173G>A
  hgvsp: ENST00000317716.9:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.447G>A
  hgvsp: ENST00000466045.1:c.447G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*425G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1596G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*425G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.324G>A
  hgvsp: ENST00000343407.5:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.909G>A
  hgvsp: ENST00000478080.1:c.909G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1173G>A
  hgvsp: ENST00000542731.1:c.1173G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14695
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28160
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1855
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8213
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val391Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

7-105653432-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653432
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653432
    reference: chr 7
allele count: 4
allele frequency: 3.3655302392892e-5
allele num: 118852
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.453C>T
  hgvsp: ENST00000466045.1:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1602C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.915C>T
  hgvsp: ENST00000478080.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*431C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1179C>T
  hgvsp: ENST00000542731.1:c.1179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.330C>T
  hgvsp: ENST00000343407.5:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*431C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1179C>T
  hgvsp: ENST00000317716.9:c.1179C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1930
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1057
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21056
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1262
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9627
  bin: 9.75e1
  variant carriers: 4
hgvs: p.Ser393Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum

7-105653434-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653434
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653434
    reference: chr 7
allele count: 1
allele frequency: 8.426445556735258e-6
allele num: 118674
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1604G>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.332G>T
  hgvsp: ENSP00000341510.5:p.Gly111Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.917G>T
  hgvsp: ENSP00000417771.1:p.Gly306Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1181G>T
  hgvsp: ENSP00000439766.1:p.Gly394Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1181G>T
  hgvsp: ENSP00000325954.9:p.Gly394Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.455G>T
  hgvsp: ENSP00000419017.1:p.Gly152Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*433G>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*433G>T
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5880
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14655
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21040
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3933
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly394Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

7-105653450-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653450
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653450
    reference: chr 7
allele count: 584
allele frequency: 5.00831861139221e-3
allele num: 116606
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*449G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1197G>A
  hgvsp: ENST00000542731.1:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.471G>A
  hgvsp: ENST00000466045.1:c.471G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1197G>A
  hgvsp: ENST00000317716.9:c.1197G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.348G>A
  hgvsp: ENST00000343407.5:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.933G>A
  hgvsp: ENST00000478080.1:c.933G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*449G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1620G>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 7.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 864
  bin: 5.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 20460
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 1912
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 14586
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 9.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5872
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 6.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 9.75e1
  variant carriers: 287
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 5.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8030
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1852
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1259
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln399Gln
num of homozygotes: 15
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-105653454-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653454
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653454
    reference: chr 7
allele count: 1
allele frequency: 8.598748022287955e-6
allele num: 116296
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*453C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*453C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1201C>G
  hgvsp: ENSP00000325954.9:p.Pro401Ala
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.937C>G
  hgvsp: ENSP00000417771.1:p.Pro313Ala
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1201C>G
  hgvsp: ENSP00000439766.1:p.Pro401Ala
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.475C>G
  hgvsp: ENSP00000419017.1:p.Pro159Ala
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1624C>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.352C>G
  hgvsp: ENSP00000341510.5:p.Pro118Ala
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20589
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1972
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14713
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2992
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3343
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25463
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro401Ala
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

7-105653457-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653457
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653457
    reference: chr 7
allele count: 1
allele frequency: 8.621878879845495e-6
allele num: 115984
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.940G>C
  hgvsp: ENSP00000417771.1:p.Ala314Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1204G>C
  hgvsp: ENSP00000325954.9:p.Ala402Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.478G>C
  hgvsp: ENSP00000419017.1:p.Ala160Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*456G>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*456G>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1627G>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1204G>C
  hgvsp: ENSP00000439766.1:p.Ala402Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.355G>C
  hgvsp: ENSP00000341510.5:p.Ala119Pro
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14698
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1931
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20518
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3524
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8073
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala402Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD

7-105653459-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653459
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653459
    reference: chr 7
allele count: 277
allele frequency: 2.392220533370181e-3
allele num: 115792
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*458T>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.480T>G
  hgvsp: ENST00000466045.1:c.480T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1206T>G
  hgvsp: ENST00000542731.1:c.1206T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*458T>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1206T>G
  hgvsp: ENST00000317716.9:c.1206T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.357T>G
  hgvsp: ENST00000343407.5:c.357T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.942T>G
  hgvsp: ENST00000478080.1:c.942T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1629T>G
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20472
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1927
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 14693
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 6.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3116
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 9.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 3944
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala402Ala
num of homozygotes: 3
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: T
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-105653473-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653473
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653473
    reference: chr 7
allele count: 1
allele frequency: 8.74018913769294e-6
allele num: 114414
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.371T>C
  hgvsp: ENSP00000341510.5:p.Ile124Thr
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.494T>C
  hgvsp: ENSP00000419017.1:p.Ile165Thr
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.956T>C
  hgvsp: ENSP00000417771.1:p.Ile319Thr
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*472T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*472T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1220T>C
  hgvsp: ENSP00000325954.9:p.Ile407Thr
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1220T>C
  hgvsp: ENSP00000439766.1:p.Ile407Thr
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1643T>C
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14717
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2517
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8080
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9052
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3748
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile407Thr
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

7-105653477-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653477
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653477
    reference: chr 7
allele count: 6
allele frequency: 5.256333882328206e-5
allele num: 114148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1224G>A
  hgvsp: ENST00000542731.1:c.1224G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.498G>A
  hgvsp: ENST00000466045.1:c.498G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1647G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417198
  ensembl transcript: ENST00000496633
  gene symbol: CDHR3
  hgvsc: ENST00000496633.1:c.*476G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.960G>A
  hgvsp: ENST00000478080.1:c.960G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1224G>A
  hgvsp: ENST00000317716.9:c.1224G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.375G>A
  hgvsp: ENST00000343407.5:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*476G>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20404
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14706
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1271
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3746
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1224G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

7-105653503-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653503
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653503
    reference: chr 7
allele count: 2
allele frequency: 1.795590030884149e-5
allele num: 111384
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.375+26A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1224+26A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.960+26A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*476+26A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.498+26A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1647+26A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1224+26A>G
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3082
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13512
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2644
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22676
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 940
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

7-105653511-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653511
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653511
    reference: chr 7
allele count: 5
allele frequency: 4.525706010137581e-5
allele num: 110480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.498+34A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.960+34A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1224+34A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*476+34A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1647+34A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1224+34A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.375+34A>G
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3029
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11300
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16560
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4402
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4699
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5368
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3684
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9005
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2874
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

7-105653513-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653513
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653513
    reference: chr 7
allele count: 2
allele frequency: 1.815639922290611e-5
allele num: 110154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.375+36C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1224+36C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.960+36C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1647+36C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.498+36C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*476+36C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1224+36C>T
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3020
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5822
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2802
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4700
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15822
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2396
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2331
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1838
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16933
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6656
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

7-105653516-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653516
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653516
    reference: chr 7
allele count: 2
allele frequency: 1.819074818547287e-5
allele num: 109946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1647+39G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1224+39G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*476+39G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.375+39G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1224+39G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.498+39G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.960+39G>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5164
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5287
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3299
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2342
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3000
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3562
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1759
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 833
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2970
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2580
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

7-105653520-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105653520
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105653520
    reference: chr 7
allele count: 1
allele frequency: 9.127252149467881e-6
allele num: 109562
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1224+43T>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*476+43T>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1224+43T>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.375+43T>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1647+43T>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.498+43T>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.960+43T>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7730
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1885
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9408
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8554
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3002
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11424
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2391
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2289
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1833
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1221
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3963
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2439
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2083
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

7-105655508-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655508
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655508
    reference: chr 7
allele count: 4
allele frequency: 1.161845009875683e-4
allele num: 34428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.376-49A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1648-49A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*477-49A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.499-49A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1225-49A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1225-49A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.961-49A>G
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2273
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5719
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16901
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25646
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2417
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9543
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12956
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 659
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6916
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

7-105655510-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655510
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655510
    reference: chr 7
allele count: 13
allele frequency: 3.772489843296576e-4
allele num: 34460
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*477-47A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1648-47A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.499-47A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1225-47A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.376-47A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.961-47A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1225-47A>G
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16849
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5722
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25690
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2401
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2437
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6879
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1118
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 5.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8403
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

7-105655514-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655514
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655514
    reference: chr 7
allele count: 1
allele frequency: 2.89234685023428e-5
allele num: 34574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.376-43G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1648-43G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*477-43G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1225-43G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.499-43G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.961-43G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1225-43G>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16468
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12239
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6215
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1067
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3853
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

7-105655518-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655518
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655518
    reference: chr 7
allele count: 3
allele frequency: 8.619203585588692e-5
allele num: 34806
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*477-39G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.376-39G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.499-39G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1225-39G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1648-39G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1225-39G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.961-39G>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5873
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26654
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15735
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5564
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2451
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12159
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3399
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 18124
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4047
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2418
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

7-105655523-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655523
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655523
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 35374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1225-34A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.961-34A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.499-34A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1225-34A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.376-34A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*477-34A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1648-34A>G
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27872
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 851
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2678
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2510
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4539
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4874
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11603
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-105655534-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655534
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655534
    reference: chr 7
allele count: 1
allele frequency: 2.68889486421081e-5
allele num: 37190
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*477-23C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1225-23C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1648-23C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1225-23C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.961-23C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.499-23C>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.376-23C>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9542
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6160
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31843
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 827
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2405
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8491
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28810
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

7-105655538-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655538
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655538
    reference: chr 7
allele count: 1
allele frequency: 2.589063794531897e-5
allele num: 38624
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*477-19T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1225-19T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.376-19T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.961-19T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1648-19T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1225-19T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.499-19T>C
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6135
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31036
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6275
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 450
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1642
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

7-105655539-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655539
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655539
    reference: chr 7
allele count: 1
allele frequency: 2.570165518659402e-5
allele num: 38908
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1225-18A>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.376-18A>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1225-18A>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.961-18A>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*477-18A>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1648-18A>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.499-18A>T
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33510
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1366
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 262
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6500
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum

7-105655552-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655552
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655552
    reference: chr 7
allele count: 1
allele frequency: 2.204196790689473e-5
allele num: 45368
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1225-5T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1225-5T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.376-5T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1648-5T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*477-5T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.961-5T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.499-5T>C
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3324
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3397
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1292
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 467
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1225-5T>C
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-105655556-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655556
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655556
    reference: chr 7
allele count: 3
allele frequency: 6.097065279245589e-5
allele num: 49204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.961-1G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1648-1G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1225-1G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*477-1G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1225-1G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.376-1G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.499-1G>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5295
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32941
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3398
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2072
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32708
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11696
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1225-1G>A
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD

7-105655557-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655557
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655557
    reference: chr 7
allele count: 2
allele frequency: 3.98120869495979e-5
allele num: 50236
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1225C>T
  hgvsp: ENST00000317716.9:c.1225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.376C>T
  hgvsp: ENST00000343407.5:c.376C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.499C>T
  hgvsp: ENST00000466045.1:c.499C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1648C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.961C>T
  hgvsp: ENST00000478080.1:c.961C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*477C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1225C>T
  hgvsp: ENST00000542731.1:c.1225C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 478
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32528
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
hgvs: c.1225C>T
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD

7-105655564-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655564
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655564
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 57538
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1232G>A
  hgvsp: ENSP00000325954.9:p.Gly411Asp
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.506G>A
  hgvsp: ENSP00000419017.1:p.Gly169Asp
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.968G>A
  hgvsp: ENSP00000417771.1:p.Gly323Asp
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.383G>A
  hgvsp: ENSP00000341510.5:p.Gly128Asp
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1232G>A
  hgvsp: ENSP00000439766.1:p.Gly411Asp
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*484G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1655G>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29850
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14278
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1272
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15286
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3395
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1750
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly411Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

7-105655568-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655568
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655568
    reference: chr 7
allele count: 4
allele frequency: 6.573325445342799e-5
allele num: 60852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.510T>C
  hgvsp: ENST00000466045.1:c.510T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.972T>C
  hgvsp: ENST00000478080.1:c.972T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1236T>C
  hgvsp: ENST00000542731.1:c.1236T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1659T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*488T>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.387T>C
  hgvsp: ENST00000343407.5:c.387T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1236T>C
  hgvsp: ENST00000317716.9:c.1236T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1558
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1664
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16353
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp412Asp
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

7-105655577-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655577
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655577
    reference: chr 7
allele count: 25
allele frequency: 3.648569760653824e-4
allele num: 68520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.981C>T
  hgvsp: ENST00000478080.1:c.981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000418958
  ensembl transcript: ENST00000468477
  gene symbol: CDHR3
  hgvsc: ENST00000468477.1:c.8C>T
  hgvsp: ENST00000468477.1:c.8C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1245C>T
  hgvsp: ENST00000317716.9:c.1245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*497C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.396C>T
  hgvsp: ENST00000343407.5:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1668C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.519C>T
  hgvsp: ENST00000466045.1:c.519C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1245C>T
  hgvsp: ENST00000542731.1:c.1245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4084
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19369
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24987
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20427
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 533
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr415Tyr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

7-105655578-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655578
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655578
    reference: chr 7
allele count: 7
allele frequency: 1.004275343605635e-4
allele num: 69702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.397G>A
  hgvsp: ENSP00000341510.5:p.Glu133Lys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.982G>A
  hgvsp: ENSP00000417771.1:p.Glu328Lys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1246G>A
  hgvsp: ENSP00000439766.1:p.Glu416Lys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.520G>A
  hgvsp: ENSP00000419017.1:p.Glu174Lys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000418958
  ensembl transcript: ENST00000468477
  gene symbol: CDHR3
  hgvsc: ENST00000468477.1:c.9G>A
  hgvsp: ENSP00000418958.1:p.Glu4Lys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1246G>A
  hgvsp: ENSP00000325954.9:p.Glu416Lys
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*498G>A
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1669G>A
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19900
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu416Lys
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: G
site quality: MQ
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

7-105655578-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655578
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655578
    reference: chr 7
allele count: 1
allele frequency: 1.434679062293765e-5
allele num: 69702
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1246G>C
  hgvsp: ENSP00000325954.9:p.Glu416Gln
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.397G>C
  hgvsp: ENSP00000341510.5:p.Glu133Gln
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1246G>C
  hgvsp: ENSP00000439766.1:p.Glu416Gln
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.520G>C
  hgvsp: ENSP00000419017.1:p.Glu174Gln
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*498G>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.982G>C
  hgvsp: ENSP00000417771.1:p.Glu328Gln
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000418958
  ensembl transcript: ENST00000468477
  gene symbol: CDHR3
  hgvsc: ENST00000468477.1:c.9G>C
  hgvsp: ENSP00000418958.1:p.Glu4Gln
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1669G>C
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu416Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

7-105655578-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655578
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655578
    reference: chr 7
allele count: 1
allele frequency: 1.434679062293765e-5
allele num: 69702
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1246G>T
  hgvsp: ENSP00000439766.1:p.Glu416Ter
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.982G>T
  hgvsp: ENSP00000417771.1:p.Glu328Ter
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1246G>T
  hgvsp: ENSP00000325954.9:p.Glu416Ter
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.520G>T
  hgvsp: ENSP00000419017.1:p.Glu174Ter
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.397G>T
  hgvsp: ENSP00000341510.5:p.Glu133Ter
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000418958
  ensembl transcript: ENST00000468477
  gene symbol: CDHR3
  hgvsc: ENST00000468477.1:c.9G>T
  hgvsp: ENSP00000418958.1:p.Glu4Ter
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1669G>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000443733
  ensembl transcript: ENST00000541203
  gene symbol: CDHR3
  hgvsc: ENST00000541203.1:c.*498G>T
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4224
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 378
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu416Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ

7-105655579-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655579
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655579
    reference: chr 7
allele count: 1
allele frequency: 1.407895477839725e-5
allele num: 71028
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.398A>T
  hgvsp: ENSP00000341510.5:p.Glu133Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000418958
  ensembl transcript: ENST00000468477
  gene symbol: CDHR3
  hgvsc: ENST00000468477.1:c.10A>T
  hgvsp: ENSP00000418958.1:p.Glu4Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.521A>T
  hgvsp: ENSP00000419017.1:p.Glu174Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1247A>T
  hgvsp: ENSP00000325954.9:p.Glu416Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1670A>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1247A>T
  hgvsp: ENSP00000439766.1:p.Glu416Val
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.983A>T
  hgvsp: ENSP00000417771.1:p.Glu328Val
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1316
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20574
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24015
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 753
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu416Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD

7-105655591-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655591
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655591
    reference: chr 7
allele count: 1
allele frequency: 1.24856415122609e-5
allele num: 80092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1259A>G
  hgvsp: ENSP00000439766.1:p.Asn420Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1682A>G
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000418958
  ensembl transcript: ENST00000468477
  gene symbol: CDHR3
  hgvsc: ENST00000468477.1:c.22A>G
  hgvsp: ENSP00000418958.1:p.Asn8Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.410A>G
  hgvsp: ENSP00000341510.5:p.Asn137Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.995A>G
  hgvsp: ENSP00000417771.1:p.Asn332Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.533A>G
  hgvsp: ENSP00000419017.1:p.Asn178Ser
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1259A>G
  hgvsp: ENSP00000325954.9:p.Asn420Ser
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4689
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3403
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19758
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1363
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26441
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 989
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20748
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 396
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Asn420Ser
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-105655596-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655596
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655596
    reference: chr 7
allele count: 1
allele frequency: 1.209511599216236e-5
allele num: 82678
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.415G>C
  hgvsp: ENSP00000341510.5:p.Ala139Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000418958
  ensembl transcript: ENST00000468477
  gene symbol: CDHR3
  hgvsc: ENST00000468477.1:c.27G>C
  hgvsp: ENSP00000418958.1:p.Ala10Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.538G>C
  hgvsp: ENSP00000419017.1:p.Ala180Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1264G>C
  hgvsp: ENSP00000325954.9:p.Ala422Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1687G>C
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1264G>C
  hgvsp: ENSP00000439766.1:p.Ala422Pro
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.1000G>C
  hgvsp: ENSP00000417771.1:p.Ala334Pro
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3294
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1329
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1394
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala422Pro
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

7-105655601-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 105655601
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 105655601
    reference: chr 7
allele count: 8
allele frequency: 9.425959091337543e-5
allele num: 84872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000418958
  ensembl transcript: ENST00000468477
  gene symbol: CDHR3
  hgvsc: ENST00000468477.1:c.32C>T
  hgvsp: ENST00000468477.1:c.32C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000419017
  ensembl transcript: ENST00000466045
  gene symbol: CDHR3
  hgvsc: ENST00000466045.1:c.543C>T
  hgvsp: ENST00000466045.1:c.543C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000325954
  ensembl transcript: ENST00000317716
  gene symbol: CDHR3
  hgvsc: ENST00000317716.9:c.1269C>T
  hgvsp: ENST00000317716.9:c.1269C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000341510
  ensembl transcript: ENST00000343407
  gene symbol: CDHR3
  hgvsc: ENST00000343407.5:c.420C>T
  hgvsp: ENST00000343407.5:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000439766
  ensembl transcript: ENST00000542731
  gene symbol: CDHR3
  hgvsc: ENST00000542731.1:c.1269C>T
  hgvsp: ENST00000542731.1:c.1269C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000128536
  ensembl transcript: ENST00000470188
  gene symbol: CDHR3
  hgvsc: ENST00000470188.1:n.1692C>T
  variant of: http://identifiers.org/hgnc/26308
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000128536
  ensembl protein: ENSP00000417771
  ensembl transcript: ENST00000478080
  gene symbol: CDHR3
  hgvsc: ENST00000478080.1:c.1005C>T
  hgvsp: ENST00000478080.1:c.1005C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/26308
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27152
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5427
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 3.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 969
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala423Ala
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 274
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4108
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3580
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3954
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 855
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2459
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1144
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1518
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.172077521293668e-5
allele num: 16202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65816
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.25e-1

DP
type: SiteQuality
SIO_000300: 1.475244e6

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.054e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.468e0

GenotypeQuality
all individuals: 3305
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2665
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5932
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3216
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5996
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5258
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3416
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 343
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20968
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1031
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3578
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536381514257621e-5
allele num: 65088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.21e0

FS
type: SiteQuality
SIO_000300: 1.827e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.46e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 2.34e1

DP
type: SiteQuality
SIO_000300: 1.384651e6

VQSLOD
type: SiteQuality
SIO_000300: -3.178e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.56e-1

GenotypeQuality
all individuals: 3158
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 833
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11622
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5804
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6501
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4814
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2074
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3424
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4243
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3577
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 344
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2902
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.567005139776858e-5
allele num: 63816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.48e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.85e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

QD
type: SiteQuality
SIO_000300: 9.93e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.32e0

DP
type: SiteQuality
SIO_000300: 1.396682e6

GenotypeQuality
all individuals: 1087
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9808
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7941
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2950
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24303
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64368
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.698677800974252e-5
allele num: 11496
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

FS
type: SiteQuality
SIO_000300: 8.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.696e0

VQSLOD
type: SiteQuality
SIO_000300: 9.58e-1

DP
type: SiteQuality
SIO_000300: 2.01767e6

QD
type: SiteQuality
SIO_000300: 1.47e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.438e0

GenotypeQuality
all individuals: 821
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24303
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2950
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1844
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9808
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 219
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5535669898086e-5
allele num: 64368
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 8.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.438e0

QD
type: SiteQuality
SIO_000300: 1.47e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.696e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

DP
type: SiteQuality
SIO_000300: 2.01767e6

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1293
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9805
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24332
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 804
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.087294190742467e-4
allele num: 64380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.19e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.12e-1

DP
type: SiteQuality
SIO_000300: 2.018086e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.89e0

QD
type: SiteQuality
SIO_000300: 1.41e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 229
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1277
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3898
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24408
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552987948813517e-5
allele num: 64392
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 788
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.510999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -3.849e0

QD
type: SiteQuality
SIO_000300: 9.6e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.947e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

DP
type: SiteQuality
SIO_000300: 2.019469e6

GenotypeQuality
all individuals: 293
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24435
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9798
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1183
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552216565255184e-5
allele num: 64424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.539e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 1.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 8.799999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 7.06e0

VQSLOD
type: SiteQuality
SIO_000300: 3.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.53e-1

DP
type: SiteQuality
SIO_000300: 2.02127e6

QD
type: SiteQuality
SIO_000300: 1.556e1

GenotypeQuality
all individuals: 293
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2923
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2793
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1842
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9796
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7956
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64422
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.037559659680432e-4
allele num: 9638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.135e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.426e0

MQ
type: SiteQuality
SIO_000300: 5.921e1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

VQSLOD
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 2.022387e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.99e-1

QD
type: SiteQuality
SIO_000300: 1.36e1

GenotypeQuality
all individuals: 296
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3903
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7969
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24485
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9800
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2795
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550291454793501e-5
allele num: 64504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.119e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.771e0

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 1.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.563e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e0

DP
type: SiteQuality
SIO_000300: 2.025029e6

GenotypeQuality
all individuals: 24508
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7970
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 789
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1843
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9800
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3902
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170138076293003e-4
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.59e-1

DP
type: SiteQuality
SIO_000300: 2.026632e6

MQ
type: SiteQuality
SIO_000300: 5.992e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.48e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

QD
type: SiteQuality
SIO_000300: 1.298e1

FS
type: SiteQuality
SIO_000300: 1.303e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.7e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

GenotypeQuality
all individuals: 164
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2797
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3901
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7970
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64558
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169317118802619e-4
allele num: 8552
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

MQ
type: SiteQuality
SIO_000300: 5.823e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.6e-2

FS
type: SiteQuality
SIO_000300: 1.265e0

QD
type: SiteQuality
SIO_000300: 1.202e1

VQSLOD
type: SiteQuality
SIO_000300: -2.066e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 2.027124e6

MQRankSum
type: SiteQuality
SIO_000300: 1.46e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24974
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3905
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9798
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 351
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 383
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3328
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2804
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11242
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.15839389087326e-5
allele num: 64952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.575e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.4e-2

QD
type: SiteQuality
SIO_000300: 1.16e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e-1

DP
type: SiteQuality
SIO_000300: 2.041265e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.964e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.12e0

GenotypeQuality
all individuals: 63
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2806
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25272
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3905
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3149
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9720
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.530967411704488e-5
allele num: 11722
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.53e-1

DP
type: SiteQuality
SIO_000300: 2.044348e6

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.15e0

QD
type: SiteQuality
SIO_000300: 1.323e1

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9794
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8007
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25348
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.067955207853965e-5
allele num: 65190
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.454514710855597e-5
allele num: 11828
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.151e0

QD
type: SiteQuality
SIO_000300: 1.22e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.046468e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.75e0

VQSLOD
type: SiteQuality
SIO_000300: -2.689e-1

MQ
type: SiteQuality
SIO_000300: 5.975e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.086e0

MQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

GenotypeQuality
all individuals: 3910
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2762
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8023
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2953
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9791
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 380
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.663138796492289e-3
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.733402669440111e-4
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.08e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 5.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

VQSLOD
type: SiteQuality
SIO_000300: 2.37e0

DP
type: SiteQuality
SIO_000300: 2.052237e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

MQRankSum
type: SiteQuality
SIO_000300: 3.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.0e-3

QD
type: SiteQuality
SIO_000300: 1.236e1

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26168
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2334
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8058
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 355
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65630
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9754
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13032
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.046e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 2.058356e6

MQRankSum
type: SiteQuality
SIO_000300: 6.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.139999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.208e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.91e0

GenotypeQuality
all individuals: 236
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9780
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2064
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3914
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8068
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2812
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.493875112040633e-4
allele num: 13388
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65736
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9758
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.989e1

MQRankSum
type: SiteQuality
SIO_000300: -2.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.326e1

FS
type: SiteQuality
SIO_000300: 1.212e0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.94e-1

DP
type: SiteQuality
SIO_000300: 2.063365e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e-1

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8091
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9778
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 133
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3917
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65770
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.372456502506635e-5
allele num: 13564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.856e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.379e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.1e-2

MQ
type: SiteQuality
SIO_000300: 5.695e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.025e0

DP
type: SiteQuality
SIO_000300: 2.064521e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.16e-1

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26636
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8093
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1846
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3918
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9777
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1961
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65798
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.365e0

MQRankSum
type: SiteQuality
SIO_000300: -6.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.649e0

DP
type: SiteQuality
SIO_000300: 2.065717e6

QD
type: SiteQuality
SIO_000300: 1.152e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

VQSLOD
type: SiteQuality
SIO_000300: 6.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.858e0

GenotypeQuality
all individuals: 104
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9776
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8088
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1869
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2819
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65822
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.024380249948781e-4
allele num: 9762
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.345e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.384e0

VQSLOD
type: SiteQuality
SIO_000300: 8.7e-1

MQ
type: SiteQuality
SIO_000300: 5.988e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-1

FS
type: SiteQuality
SIO_000300: 1.319e0

MQRankSum
type: SiteQuality
SIO_000300: -1.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 2.067392e6

QD
type: SiteQuality
SIO_000300: 1.103e1

GenotypeQuality
all individuals: 270
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8105
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2951
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26829
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3920
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2819
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9776
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13920
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9764
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65890
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 1.301e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.069593e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.41e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-2

GenotypeQuality
all individuals: 2825
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2952
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8133
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9776
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3924
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.044153720359771e-4
allele num: 9784
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66172
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14726
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.955e1

FS
type: SiteQuality
SIO_000300: 5.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

DP
type: SiteQuality
SIO_000300: 2.081173e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

QD
type: SiteQuality
SIO_000300: 1.24e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

GenotypeQuality
all individuals: 8161
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9774
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 27795
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2954
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509661835748792e-5
allele num: 66240
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14900
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.978e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.1e-1

DP
type: SiteQuality
SIO_000300: 2.082961e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.918e0

QD
type: SiteQuality
SIO_000300: 1.264e1

GenotypeQuality
all individuals: 3923
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2833
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28152
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9774
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2955
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66320
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021659174499387e-4
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.086625e6

FS
type: SiteQuality
SIO_000300: 1.743e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.17e0

MQRankSum
type: SiteQuality
SIO_000300: -7.6e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.8e-2

QD
type: SiteQuality
SIO_000300: 1.044e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.0e-1

GenotypeQuality
all individuals: 77
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8201
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9773
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 26
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.092839e6

VQSLOD
type: SiteQuality
SIO_000300: 3.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.028e0

MQRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

QD
type: SiteQuality
SIO_000300: 1.301e1

GenotypeQuality
all individuals: 76
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28802
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3934
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 456
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2840
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8220
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66522
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.299609424215698e-5
allele num: 15874
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.047e-1

QD
type: SiteQuality
SIO_000300: 1.31e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.789999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

DP
type: SiteQuality
SIO_000300: 2.096465e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8244
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3937
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9773
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 1.020199959192002e-4
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16190
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.570000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.443e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 8.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 6.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.07e-1

DP
type: SiteQuality
SIO_000300: 2.100669e6

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
all individuals: 29201
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9771
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 225
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8241
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2953
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.165e1

MQRankSum
type: SiteQuality
SIO_000300: -2.32e-1

FS
type: SiteQuality
SIO_000300: 6.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.77e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

VQSLOD
type: SiteQuality
SIO_000300: 7.46e-1

DP
type: SiteQuality
SIO_000300: 2.101238e6

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29287
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9771
bin: 9.75e1
variant carriers: 133

GenotypeQuality
all individuals: 166
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 56
allele frequency: 8.404118017828736e-4
allele num: 66634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 75
allele frequency: 1.133958270335652e-2
allele num: 6614
num of homozygotes: 1

Other
type: Population
allele count: 3
allele frequency: 3.355704697986577e-3
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.388e1

MQ
type: SiteQuality
SIO_000300: 5.976e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.856e0

VQSLOD
type: SiteQuality
SIO_000300: 4.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.38e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.23e-1

FS
type: SiteQuality
SIO_000300: 1.233e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.86e-1

DP
type: SiteQuality
SIO_000300: 2.107435e6

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2957
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29337
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9668
bin: 9.75e1
variant carriers: 34

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 32
allele frequency: 3.709714815673545e-3
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.223391240518718e-4
allele num: 16348
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66638
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.1e0

QD
type: SiteQuality
SIO_000300: 1.498e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 4.07e-1

DP
type: SiteQuality
SIO_000300: 2.086577e6

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.02e0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3949
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2855
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9640
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 212
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8283
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9800
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.988e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

FS
type: SiteQuality
SIO_000300: 9.256e0

VQSLOD
type: SiteQuality
SIO_000300: -7.318e-1

QD
type: SiteQuality
SIO_000300: 1.735e1

DP
type: SiteQuality
SIO_000300: 2.081238e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.45e-1

GenotypeQuality
all individuals: 2959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3947
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 4
allele frequency: 4.081632653061225e-4
allele num: 9800
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16260
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.24e0

MQ
type: SiteQuality
SIO_000300: 6.007e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.7e-2

DP
type: SiteQuality
SIO_000300: 2.079769e6

QD
type: SiteQuality
SIO_000300: 1.569e1

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2852
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9634
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29103
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501456412720339e-5
allele num: 66602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.4e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.09e-1

DP
type: SiteQuality
SIO_000300: 2.077765e6

MQ
type: SiteQuality
SIO_000300: 5.982e1

QD
type: SiteQuality
SIO_000300: 1.384e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.95e-1

GenotypeQuality
all individuals: 45
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28983
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2850
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3941
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501817198810561e-5
allele num: 66586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16126
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.911e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.65e0

QD
type: SiteQuality
SIO_000300: 1.615e1

FS
type: SiteQuality
SIO_000300: 1.0417e1

DP
type: SiteQuality
SIO_000300: 2.076765e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.496e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.37e0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

GenotypeQuality
all individuals: 70
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8242
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3937
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.320027648176948e-4
allele num: 11574
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.121076233183856e-3
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15878
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.87e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.072039e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-2

MQ
type: SiteQuality
SIO_000300: 5.982e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.165e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

QD
type: SiteQuality
SIO_000300: 1.4e1

GenotypeQuality
all individuals: 1039
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2840
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3938
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2960
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9629
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1264
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.403688524590164e-5
allele num: 15616
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.969e1

DP
type: SiteQuality
SIO_000300: 2.066191e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

QD
type: SiteQuality
SIO_000300: 1.233e1

MQRankSum
type: SiteQuality
SIO_000300: 8.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

FS
type: SiteQuality
SIO_000300: 2.378e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.36e-1

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27397
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1541
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3931
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017956843217142e-5
allele num: 66270
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.02291325695581e-4
allele num: 9776
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.647526807333103e-5
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

MQRankSum
type: SiteQuality
SIO_000300: -6.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.02e-1

DP
type: SiteQuality
SIO_000300: 2.058233e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 2.327e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 1.434e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.24e0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8163
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2829
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2959
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27283
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9624
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.02291325695581e-4
allele num: 9776
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66228
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.966e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.42e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.47e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.57e-1

DP
type: SiteQuality
SIO_000300: 2.054811e6

GenotypeQuality
all individuals: 3232
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3919
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 338
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25365
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2956
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9652
bin: 9.75e1
variant carriers: 569

GenotypeQuality
all individuals: 2811
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 35
allele frequency: 3.035559410234172e-3
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.065838357999878e-4
allele num: 65676
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 539
allele frequency: 5.532744816259495e-2
allele num: 9742
num of homozygotes: 15

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.496503496503497e-3
allele num: 858
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.66e-2

DP
type: SiteQuality
SIO_000300: 2.036239e6

QD
type: SiteQuality
SIO_000300: 1.545e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.48e0

MQRankSum
type: SiteQuality
SIO_000300: 1.97e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.91e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.9e-1

GenotypeQuality
all individuals: 214
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2834
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3949
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9239
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8082
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 336
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523972080831479e-5
allele num: 65618
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13346
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.19e-1

FS
type: SiteQuality
SIO_000300: 3.263e0

DP
type: SiteQuality
SIO_000300: 1.997945e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.19e0

QD
type: SiteQuality
SIO_000300: 1.069e1

VQSLOD
type: SiteQuality
SIO_000300: 5.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQ
type: SiteQuality
SIO_000300: 5.927e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

GenotypeQuality
all individuals: 88
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2989
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2832
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9237
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1268
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3949
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25281
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.027960526315789e-4
allele num: 9728
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.847e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.24e-1

DP
type: SiteQuality
SIO_000300: 1.993847e6

BaseQRankSum
type: SiteQuality
SIO_000300: -6.2e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -2.129e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.478e1

GenotypeQuality
all individuals: 3616
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2987
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8066
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25262
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9265
bin: 9.75e1
variant carriers: 274

GenotypeQuality
all individuals: 1265
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.352941176470588e-3
allele num: 850
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.581131844974499e-5
allele num: 65486
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.215277777777778e-3
allele num: 11520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12998
num of homozygotes: 0

African
type: Population
allele count: 258
allele frequency: 2.653229123817359e-2
allele num: 9724
num of homozygotes: 3

QD
type: SiteQuality
SIO_000300: 1.545e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.2e-2

MQ
type: SiteQuality
SIO_000300: 5.978e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.92e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.46e0

DP
type: SiteQuality
SIO_000300: 1.995453e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.35e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.41e-1

GenotypeQuality
all individuals: 95
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2827
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1880
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3957
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3005
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11996
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.534589650727396e-5
allele num: 65164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -8.29e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.72e0

FS
type: SiteQuality
SIO_000300: 1.946e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

QD
type: SiteQuality
SIO_000300: 1.509e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.36e-1

DP
type: SiteQuality
SIO_000300: 1.968001e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9048
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 265
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3002
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8069
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1877
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3947
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2824
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.219422249539029e-5
allele num: 65080
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11830
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.47e1

MQ
type: SiteQuality
SIO_000300: 5.956e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.92e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 4.75e0

MQRankSum
type: SiteQuality
SIO_000300: 4.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

DP
type: SiteQuality
SIO_000300: 1.966173e6

GenotypeQuality
all individuals: 167
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3777
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2923
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2660
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9015
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7406
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11428
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.35072872590503e-4
allele num: 8508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64268
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.498e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.8e0

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

MQRankSum
type: SiteQuality
SIO_000300: -1.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

QD
type: SiteQuality
SIO_000300: 1.373e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.902848e6

GenotypeQuality
all individuals: 796
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 706
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2011
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6856
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2107
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1841
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2551
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9628
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.380585246188891e-4
allele num: 11414
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63966
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.909e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

DP
type: SiteQuality
SIO_000300: 1.827969e6

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.373e1

GenotypeQuality
all individuals: 2505
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2863
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3636
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2969
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1097
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 760
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8995
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1023
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.775008775008775e-5
allele num: 11396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.566170712607674e-5
allele num: 63850
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.064e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 3.83e0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.80987e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.1e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 9.9e-2

QD
type: SiteQuality
SIO_000300: 1.268e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.6e-2

GenotypeQuality
all individuals: 2445
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15170
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2317
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 8989
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2857
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2816
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.136959658698789e-5
allele num: 63756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.96e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.62e-1

DP
type: SiteQuality
SIO_000300: 1.784134e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

QD
type: SiteQuality
SIO_000300: 8.56e0

GenotypeQuality
all individuals: 2797
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 875
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3642
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10062
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2332
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8987
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5461
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.572970082109038e-5
allele num: 63574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8392
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.307e1

MQRankSum
type: SiteQuality
SIO_000300: 3.04e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.54e-1

FS
type: SiteQuality
SIO_000300: 1.657e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.9e0

DP
type: SiteQuality
SIO_000300: 1.748592e6

GenotypeQuality
all individuals: 591
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 11746
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 461
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3404
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2436
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3378
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.334539512081242e-4
allele num: 17134
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1526
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.66e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.27526e5

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

QD
type: SiteQuality
SIO_000300: 1.524e1

GenotypeQuality
all individuals: 1326
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 364
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14090
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3350
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 456
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11956
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 639
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3415
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 482
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 2.331545814875262e-4
allele num: 17156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1522
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.464128843338214e-3
allele num: 1366
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 8.503401360544217e-4
allele num: 8232
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.4e-1

FS
type: SiteQuality
SIO_000300: 5.476e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-2

QD
type: SiteQuality
SIO_000300: 1.581e1

DP
type: SiteQuality
SIO_000300: 7.30182e5

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

GenotypeQuality
all individuals: 6491
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16661
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1120
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3399
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1374
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.803156917363046e-5
allele num: 17232
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.38501e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.58e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

MQRankSum
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.59e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.332e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5947
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.753077896674721e-5
allele num: 17382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 348
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.421893921046258e-4
allele num: 8258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2458
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.35e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-2

DP
type: SiteQuality
SIO_000300: 7.47002e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.248e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.167e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 465
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 442
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1001
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20937
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4431
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 317
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2433
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 7.61163e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.28e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

MQRankSum
type: SiteQuality
SIO_000300: 3.2e-1

FS
type: SiteQuality
SIO_000300: 1.112e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.669999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

QD
type: SiteQuality
SIO_000300: 1.476e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 396
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5643
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 468
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.580357142857143e-4
allele num: 1792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18754
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.05295e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.23e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.75e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.855e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

QD
type: SiteQuality
SIO_000300: 1.069e1

GenotypeQuality
all individuals: 154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2582
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6853
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3398
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 263
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.110906674844117e-5
allele num: 19566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1772
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1950
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 9.23e-1

FS
type: SiteQuality
SIO_000300: 3.665e0

VQSLOD
type: SiteQuality
SIO_000300: -2.335e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.44e-2

DP
type: SiteQuality
SIO_000300: 8.25067e5

BaseQRankSum
type: SiteQuality
SIO_000300: 7.95e-1

QD
type: SiteQuality
SIO_000300: 2.347e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.23e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2562
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2355
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31650
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3397
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1210
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6488
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 107
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.06636943965954e-5
allele num: 19738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2724
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

DP
type: SiteQuality
SIO_000300: 8.30143e5

VQSLOD
type: SiteQuality
SIO_000300: -6.169e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.39e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 33591
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9694
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 920
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 362
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2232
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2436
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23696
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.328830926874709e-4
allele num: 4294
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.1e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.8e-2

DP
type: SiteQuality
SIO_000300: 9.00214e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.091e1

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.8e-1

GenotypeQuality
all individuals: 476
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2429
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1829
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1337
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3174
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.14880906793291e-4
allele num: 26114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3064
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8988
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.202e0

QD
type: SiteQuality
SIO_000300: 1.336e1

MQRankSum
type: SiteQuality
SIO_000300: 6.25e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.093e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

DP
type: SiteQuality
SIO_000300: 9.35434e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.031e0

VQSLOD
type: SiteQuality
SIO_000300: 6.37e-1

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3399
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2270
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2025
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12280
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3224
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3182
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 7.49232037161909e-5
allele num: 26694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9050
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.409e0

DP
type: SiteQuality
SIO_000300: 9.44e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.867e0

MQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 9.52e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.265e1

GenotypeQuality
all individuals: 491
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30045
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 496
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 774
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 533
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31106
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3880
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.74e0

FS
type: SiteQuality
SIO_000300: 7.782e0

MQRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 1.001409e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.281e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.61e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 28813
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3398
bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3706
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.208386200229593e-4
allele num: 33102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4200
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.607e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.31e-1

QD
type: SiteQuality
SIO_000300: 1.281e1

VQSLOD
type: SiteQuality
SIO_000300: 2.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e0

MQRankSum
type: SiteQuality
SIO_000300: 2.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.3e-3

DP
type: SiteQuality
SIO_000300: 1.026293e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 368
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 900
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25576
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1676
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1417
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 811
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3419
bin: 9.75e1
variant carriers: 24

African
type: Population
allele count: 1
allele frequency: 1.668891855807744e-4
allele num: 5992
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 3.980680430975001e-4
allele num: 37682
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.750937734433609e-4
allele num: 5332
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4888
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 6.955484896661367e-4
allele num: 10064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4020
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.87e0

QD
type: SiteQuality
SIO_000300: 1.16e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.4e-2

DP
type: SiteQuality
SIO_000300: 1.091025e6

GenotypeQuality
all individuals: 20724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 25057
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3402
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 529
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.302761855132882e-4
allele num: 38380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 3.645643456069996e-4
allele num: 5486
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.10113e6

FS
type: SiteQuality
SIO_000300: 5.282e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

QD
type: SiteQuality
SIO_000300: 1.152e1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

GenotypeQuality
all individuals: 1353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25057
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5486
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.637733377006223e-4
allele num: 6106
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.152e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

FS
type: SiteQuality
SIO_000300: 5.282e0

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

DP
type: SiteQuality
SIO_000300: 1.10113e6

GenotypeQuality
all individuals: 389
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1694
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25057
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20724
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 824
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 536
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1379
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4062
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.637733377006223e-4
allele num: 6106
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4974
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5486
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.10113e6

QD
type: SiteQuality
SIO_000300: 1.152e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.5e-1

FS
type: SiteQuality
SIO_000300: 5.282e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 192
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1751
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24732
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21902
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3398
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10240
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4130
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.616553507921112e-4
allele num: 6186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5094
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39158
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.212e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.134e0

DP
type: SiteQuality
SIO_000300: 1.109424e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.24e0

QD
type: SiteQuality
SIO_000300: 2.13e1

GenotypeQuality
all individuals: 499
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 3398
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.253165697805416e-5
allele num: 44382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4578
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.184622e6

QD
type: SiteQuality
SIO_000300: 4.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.817e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 254
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 917
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1019
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 908
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27696
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3398
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 640
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.605136436597111e-4
allele num: 6230
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6982
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7210
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4682
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45860
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

DP
type: SiteQuality
SIO_000300: 1.207745e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: 5.83e-1

FS
type: SiteQuality
SIO_000300: 1.86e0

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

GenotypeQuality
all individuals: 847
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
bin: 7.5e0
variant carriers: 0