7-89976040-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976040
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976040
    reference: chr 7
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.25C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-16C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-16C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6090C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4404C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-16C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6090C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-16C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6090C>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19583
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1489
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: MQ

7-89976040-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976040
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976040
    reference: chr 7
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6090C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.25C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-16C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-16C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4404C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6090C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-16C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-16C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6090C>G
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4249
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19583
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

7-89976042-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976042
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976042
    reference: chr 7
allele count: 5
allele frequency: 4.11936265221045e-5
allele num: 121378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-14G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6088G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6088G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-14G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4406G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.27G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-14G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-14G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6088G>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19582
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4212
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2082
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

7-89976043-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976043
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976043
    reference: chr 7
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6087G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-13G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-13G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.28G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4407G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6087G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-13G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6087G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-13G>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19581
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40975
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6689
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

7-89976043-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976043
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976043
    reference: chr 7
allele count: 10
allele frequency: 8.238589553468446e-5
allele num: 121380
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-13G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.28G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6087G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-13G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6087G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-13G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4407G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-13G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6087G>C
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4250
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19581
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3522
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-89976044-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976044
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976044
    reference: chr 7
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-12C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6086C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-12C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-12C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.29C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4408C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-12C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.-12C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6086C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6086C>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19574
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-89976044-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976044
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976044
    reference: chr 7
allele count: 4
allele frequency: 3.295435821387378e-5
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4408C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6086C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6086C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.29C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-12C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-12C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.-12C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-12C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6086C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-12C>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19574
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3830
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1488
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

7-89976045-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976045
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976045
    reference: chr 7
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-11C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6085C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6085C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-11C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-11C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-11C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.-11C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.30C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6085C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4409C>G
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19575
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6696
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

7-89976045-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976045
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976045
    reference: chr 7
allele count: 7
allele frequency: 5.76672762921589e-5
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-11C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6085C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4409C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-11C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.-11C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.30C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6085C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6085C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-11C>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3870
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19575
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD

7-89976046-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976046
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976046
    reference: chr 7
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-10T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.31T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-10T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4410T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-10T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6084T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-10T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6084T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.-10T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6084T>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19569
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3527
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

7-89976046-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976046
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976046
    reference: chr 7
allele count: 2
allele frequency: 1.647609318878308e-5
allele num: 121388
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6084T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6084T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-10T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-10T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.-10T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-10T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-10T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6084T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4410T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.31T>C
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19569
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4214
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3872
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3829
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1609
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2081
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3527
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

7-89976050-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976050
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976050
    reference: chr 7
allele count: 86
allele frequency: 7.084603344591811e-4
allele num: 121390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6080G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6080G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6080G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-6G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-6G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4414G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-6G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.35G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-6G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.-6G>C
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3869
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2053
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19582
  bin: 9.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4211
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4286
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2440
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3528
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

7-89976051-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976051
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976051
    reference: chr 7
allele count: 1
allele frequency: 8.238046594391538e-6
allele num: 121388
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-5C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-5C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6079C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4415C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6079C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.-5C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-5C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6079C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-5C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.36C>G
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19958
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ

7-89976051-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976051
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976051
    reference: chr 7
allele count: 2229
allele frequency: 1.836260585889874e-2
allele num: 121388
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-5C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.36C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.-5C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6079C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4415C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-5C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-5C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6079C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6079C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-5C>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4261
  bin: 8.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3796
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 3238
  bin: 6.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 6.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4239
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1536
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2627
  bin: 5.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 4213
  bin: 7.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 19958
  bin: 9.75e1
  variant carriers: 1923
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2408
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2210
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 20
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

7-89976052-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976052
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976052
    reference: chr 7
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.37A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-4A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-4A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-4A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6078A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6078A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.-4A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6078A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-4A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4416A>G
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1591
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-89976054-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976054
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976054
    reference: chr 7
allele count: 3
allele frequency: 2.47133254250692e-5
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.39C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6076C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-2C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6076C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-2C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-2C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4418C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.-2C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6076C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-2C>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4382
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18663
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1777
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-89976055-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976055
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976055
    reference: chr 7
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.40C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.-1C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-1C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-1C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-1C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6075C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6075C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-1C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4419C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6075C>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18696
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

7-89976055-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976055
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976055
    reference: chr 7
allele count: 171
allele frequency: 1.408636341170074e-3
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.-1C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6075C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.-1C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.-1C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.-1C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.40C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6075C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4419C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6075C>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1585
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4389
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4342
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1763
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18696
  bin: 9.75e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3552
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 4
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

7-89976056-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976056
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976056
    reference: chr 7
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.1A>G
  hgvsp: ENSP00000257659.8:p.Met1?
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4420A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6074A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.41A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6074A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.1A>G
  hgvsp: ENSP00000416713.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.1A>G
  hgvsp: ENSP00000369398.3:p.Met1?
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.1A>G
  hgvsp: ENSP00000416596.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.1A>G
  hgvsp: ENSP00000222511.6:p.Met1?
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6074A>G
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18632
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

7-89976056-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976056
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976056
    reference: chr 7
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: start_lost
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.1A>T
  hgvsp: ENSP00000222511.6:p.Met1?
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.1A>T
  hgvsp: ENSP00000369398.3:p.Met1?
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6074A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4420A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6074A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.41A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.1A>T
  hgvsp: ENSP00000416596.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.1A>T
  hgvsp: ENSP00000257659.8:p.Met1?
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: start_lost
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.1A>T
  hgvsp: ENSP00000416713.1:p.Met1?
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6074A>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18632
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Met1?
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

7-89976062-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976062
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976062
    reference: chr 7
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.7C>T
  hgvsp: ENSP00000416713.1:p.His3Tyr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4426C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.7C>T
  hgvsp: ENSP00000257659.8:p.His3Tyr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.7C>T
  hgvsp: ENSP00000369398.3:p.His3Tyr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6068C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.7C>T
  hgvsp: ENSP00000222511.6:p.His3Tyr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.7C>T
  hgvsp: ENSP00000416596.1:p.His3Tyr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.47C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6068C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6068C>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18631
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3564
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His3Tyr
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-89976063-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976063
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976063
    reference: chr 7
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.8A>C
  hgvsp: ENSP00000257659.8:p.His3Pro
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.8A>C
  hgvsp: ENSP00000369398.3:p.His3Pro
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.8A>C
  hgvsp: ENSP00000416713.1:p.His3Pro
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6067A>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4427A>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6067A>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.8A>C
  hgvsp: ENSP00000222511.6:p.His3Pro
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.48A>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.8A>C
  hgvsp: ENSP00000416596.1:p.His3Pro
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6067A>C
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18631
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His3Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

7-89976063-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976063
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976063
    reference: chr 7
allele count: 4
allele frequency: 3.294947198471145e-5
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.48A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6067A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.8A>G
  hgvsp: ENSP00000257659.8:p.His3Arg
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.8A>G
  hgvsp: ENSP00000222511.6:p.His3Arg
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.8A>G
  hgvsp: ENSP00000369398.3:p.His3Arg
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6067A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.8A>G
  hgvsp: ENSP00000416713.1:p.His3Arg
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.8A>G
  hgvsp: ENSP00000416596.1:p.His3Arg
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4427A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6067A>G
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18631
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His3Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-89976063-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976063
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976063
    reference: chr 7
allele count: 1
allele frequency: 8.237367996177861e-6
allele num: 121398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6067A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.8A>T
  hgvsp: ENSP00000416596.1:p.His3Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.8A>T
  hgvsp: ENSP00000257659.8:p.His3Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.8A>T
  hgvsp: ENSP00000416713.1:p.His3Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4427A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.48A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6067A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.8A>T
  hgvsp: ENSP00000369398.3:p.His3Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6067A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.8A>T
  hgvsp: ENSP00000222511.6:p.His3Leu
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4397
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18631
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.His3Leu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

7-89976065-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976065
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976065
    reference: chr 7
allele count: 2
allele frequency: 1.647473599235572e-5
allele num: 121398
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6065T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4429T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.50T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6065T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.10T>G
  hgvsp: ENSP00000369398.3:p.Cys4Gly
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.10T>G
  hgvsp: ENSP00000222511.6:p.Cys4Gly
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.10T>G
  hgvsp: ENSP00000257659.8:p.Cys4Gly
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6065T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.10T>G
  hgvsp: ENSP00000416713.1:p.Cys4Gly
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.10T>G
  hgvsp: ENSP00000416596.1:p.Cys4Gly
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18629
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3359
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40740
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Cys4Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff

7-89976078-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976078
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976078
    reference: chr 7
allele count: 1
allele frequency: 8.237639422047218e-6
allele num: 121394
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4442T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6052T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6052T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.23T>G
  hgvsp: ENSP00000416596.1:p.Leu8Trp
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.23T>G
  hgvsp: ENSP00000369398.3:p.Leu8Trp
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.23T>G
  hgvsp: ENSP00000257659.8:p.Leu8Trp
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.23T>G
  hgvsp: ENSP00000416713.1:p.Leu8Trp
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.23T>G
  hgvsp: ENSP00000222511.6:p.Leu8Trp
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6052T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.63T>G
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18628
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu8Trp
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

7-89976080-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976080
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976080
    reference: chr 7
allele count: 2
allele frequency: 1.647527884409444e-5
allele num: 121394
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.25T>C
  hgvsp: ENSP00000222511.6:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.25T>C
  hgvsp: ENSP00000369398.3:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.25T>C
  hgvsp: ENSP00000416713.1:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.25T>C
  hgvsp: ENSP00000416596.1:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6050T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.25T>C
  hgvsp: ENSP00000257659.8:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4444T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.65T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6050T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6050T>C
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18628
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3937
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Phe9Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff

7-89976082-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976082
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976082
    reference: chr 7
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6048C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.27C>G
  hgvsp: ENSP00000222511.6:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.67C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.27C>G
  hgvsp: ENSP00000416596.1:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.27C>G
  hgvsp: ENSP00000257659.8:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.27C>G
  hgvsp: ENSP00000369398.3:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.27C>G
  hgvsp: ENSP00000416713.1:p.Phe9Leu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6048C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4446C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6048C>G
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18628
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe9Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

7-89976082-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976082
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976082
    reference: chr 7
allele count: 8
allele frequency: 6.590328692643546e-5
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.67C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.27C>T
  hgvsp: ENST00000439832.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.27C>T
  hgvsp: ENST00000417207.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6048C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.27C>T
  hgvsp: ENST00000257659.8:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.27C>T
  hgvsp: ENST00000222511.6:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6048C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6048C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4446C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.27C>T
  hgvsp: ENST00000380058.3:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18628
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe9Phe
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

7-89976085-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976085
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976085
    reference: chr 7
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4449A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.30A>T
  hgvsp: ENSP00000416713.1:p.Arg10Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.30A>T
  hgvsp: ENSP00000369398.3:p.Arg10Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.30A>T
  hgvsp: ENSP00000257659.8:p.Arg10Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.30A>T
  hgvsp: ENSP00000416596.1:p.Arg10Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.30A>T
  hgvsp: ENSP00000222511.6:p.Arg10Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6045A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6045A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.70A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6045A>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18624
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg10Ser
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD

7-89976092-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976092
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976092
    reference: chr 7
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6038C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4456C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6038C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+4C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+4C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+4C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+4C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+4C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+4C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6038C>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18623
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4006
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3664
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4400
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
hgvs: c.33+4C>T
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

7-89976100-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976100
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976100
    reference: chr 7
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6030T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4464T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+12T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6030T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6030T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+12T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+12T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+12T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+12T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+12T>G
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18632
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

7-89976100-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976100
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976101
    reference: chr 7
allele count: 58
allele frequency: 4.777988302166571e-4
allele num: 121390
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4468dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+16dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6026dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6026dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+16dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6026dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+16dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+16dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+16dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+16dupC
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18632
  bin: 9.75e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4398
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3665
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4337
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6738
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2460
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

7-89976106-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976106
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976106
    reference: chr 7
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6024C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6024C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+18C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4470C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+18C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6024C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+18C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+18C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+18C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+18C>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2122
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18612
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6721
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2459
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

7-89976112-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976112
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976112
    reference: chr 7
allele count: 1
allele frequency: 8.238589553468446e-6
allele num: 121380
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+24G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6018G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6018G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+24G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6018G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+24G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+24G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+24G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+24G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4476G>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2124
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4339
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18610
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

7-89976114-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976114
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976114
    reference: chr 7
allele count: 1
allele frequency: 8.238182327451271e-6
allele num: 121386
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+26T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6016T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6016T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4478T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+26T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+26T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+26T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+26T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6016T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+26T>C
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2727
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1620
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4395
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 876
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18610
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1588
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2123
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/7-89976123-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976123
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976123
    reference: chr 7
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6007C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+35C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6007C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4487C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6007C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+35C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+35C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+35C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+35C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+35C>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18609
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40725
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum

7-89976123-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976123
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976123
    reference: chr 7
allele count: 1
allele frequency: 8.242120532770671e-6
allele num: 121328
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-6007C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+35C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-6007C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+35C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4487C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+35C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+35C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+35C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+35C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-6007C>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1613
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18609
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2145
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3362
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3668
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3402
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS

7-89976131-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976131
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976132
    reference: chr 7
allele count: 17
allele frequency: 1.416312588519537e-4
allele num: 120030
alternate allele: GC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+44dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+44dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+44dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+44dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4496dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-5998dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+44dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-5998dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-5998dupC
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+44dupC
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2770
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3437
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2148
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18490
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4392
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-89976132-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976132
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976132
    reference: chr 7
allele count: 2
allele frequency: 1.776861706853356e-5
allele num: 112558
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-5998C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+44C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+44C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+44C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+44C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+44C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-5998C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-5998C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+44C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4496C>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4321
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4370
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3906
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2133
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3378
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2769
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18392
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40481
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 988
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

7-89976137-GTTC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976137
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976134
    reference: chr 7
allele count: 33967
allele frequency: 2.80103244107994e-1
allele num: 121266
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+55_33+57delCTT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+55_33+57delCTT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-5987_7-5985delCTT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4507_84+4509delCTT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-5987_7-5985delCTT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+55_33+57delCTT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-5987_7-5985delCTT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+55_33+57delCTT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+55_33+57delCTT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+55_73+57delCTT
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 5.75e1
  variant carriers: 1971
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 6.25e1
  variant carriers: 2252
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 4.75e1
  variant carriers: 1225
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 7.25e1
  variant carriers: 2291
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 2.25e1
  variant carriers: 363
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 8.75e1
  variant carriers: 1607
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.75e1
  variant carriers: 600
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 9.25e1
  variant carriers: 1314
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 4.25e1
  variant carriers: 964
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 7.75e1
  variant carriers: 2081
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.75e1
  variant carriers: 789
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 3.25e1
  variant carriers: 780
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 8.25e1
  variant carriers: 1756
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.25e1
  variant carriers: 1604
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 6.75e1
  variant carriers: 2377
genotype depth: GenotypeDepth
  all individuals: 15232
  bin: 9.75e1
  variant carriers: 5955
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.75e1
  variant carriers: 55
num of homozygotes: 5851
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: GTTC
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS

7-89976137-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976137
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976137
    reference: chr 7
allele count: 2
allele frequency: 1.649266900862567e-5
allele num: 121266
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+49G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+49G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+49G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-5993G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+49G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4501G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-5993G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+49G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+49G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-5993G>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2162
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3608
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4705
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4696
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4252
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1704
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4374
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3160
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15232
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

7-89976139-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976139
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976139
    reference: chr 7
allele count: 1
allele frequency: 1.169809555004445e-5
allele num: 85484
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+51T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-5991T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+51T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+51T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-5991T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4503T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+51T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+51T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+51T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-5991T>C
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2563
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2788
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3083
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2449
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3459
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2033
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11947
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2577
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum

7-89976140-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89976140
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89976140
    reference: chr 7
allele count: 1
allele frequency: 1.054807814016286e-5
allele num: 94804
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.33+52C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-5990C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.73+52C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.84+4504C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-5990C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.33+52C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.33+52C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.33+52C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.33+52C>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-5990C>G
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3113
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3910
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13250
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2723
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum

7-89982079-T-TAAGGTG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982079
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982085
    reference: chr 7
allele count: 15
allele frequency: 2.048956398207846e-4
allele num: 73208
alternate allele: TAAGGTG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.74-49_74-44dupAGGTGA
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-49_7-44dupAGGTGA
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.34-49_34-44dupAGGTGA
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-49_7-44dupAGGTGA
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.34-49_34-44dupAGGTGA
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.34-49_34-44dupAGGTGA
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.85-49_85-44dupAGGTGA
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.34-49_34-44dupAGGTGA
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-49_7-44dupAGGTGA
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.34-49_34-44dupAGGTGA
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7975
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20030
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3754
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19346
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12773
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5828
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

7-89982081-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982081
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982081
    reference: chr 7
allele count: 2
allele frequency: 2.735678721890901e-5
allele num: 73108
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.34-49A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.34-49A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.34-49A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-49A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-49A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.85-49A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-49A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.34-49A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.34-49A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.74-49A>G
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19406
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19974
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2839
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2507
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD

7-89982082-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982082
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982082
    reference: chr 7
allele count: 3
allele frequency: 4.10149841408728e-5
allele num: 73144
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-48G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.34-48G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.34-48G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.74-48G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.85-48G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.34-48G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-48G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.34-48G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-48G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.34-48G>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7388
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3690
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19418
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4114
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2403
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8369
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

7-89982084-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982084
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982084
    reference: chr 7
allele count: 1
allele frequency: 1.369450302648517e-5
allele num: 73022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.34-46T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.74-46T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.34-46T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-46T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-46T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-46T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.34-46T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.34-46T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.34-46T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.85-46T>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19870
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6861
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2388
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2689
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

7-89982097-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982097
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982097
    reference: chr 7
allele count: 1
allele frequency: 1.312370403422662e-5
allele num: 76198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-33G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.34-33G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.74-33G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-33G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-33G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.34-33G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.34-33G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.34-33G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.85-33G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.34-33G>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20140
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18024
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1352
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9624
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

7-89982104-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982104
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982104
    reference: chr 7
allele count: 1
allele frequency: 1.248158965525849e-5
allele num: 80118
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.34-26A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-26A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.34-26A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-26A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.74-26A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-26A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.34-26A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.85-26A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.34-26A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.34-26A>G
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2550
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19280
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-89982110-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982110
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982110
    reference: chr 7
allele count: 1
allele frequency: 1.177939548142389e-5
allele num: 84894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.34-20C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.34-20C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-20C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.34-20C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.74-20C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.34-20C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.85-20C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-20C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.34-20C>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-20C>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1870
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11032
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20731
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4210
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1622
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4591
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum

7-89982116-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982116
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982117
    reference: chr 7
allele count: 691
allele frequency: 1.032607071341044e-2
allele num: 66918
alternate allele: CT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.34-4dupT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.34-4dupT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-4dupT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.34-4dupT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.74-4dupT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-4dupT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.85-4dupT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.34-4dupT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-4dupT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.34-4dupT
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 1.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 7368
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7303
  bin: 1.75e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 3.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 9114
  bin: 2.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19117
  bin: 2.25e1
  variant carriers: 385
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3023
  bin: 2.75e1
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 7.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 8.75e1
  variant carriers: 5
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

7-89982116-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982116
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982115
    reference: chr 7
allele count: 1307
allele frequency: 1.953136674736244e-2
allele num: 66918
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-4delT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.34-4delT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.34-4delT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.34-4delT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-4delT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-4delT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.85-4delT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.34-4delT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.34-4delT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.74-4delT
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 3.75e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 19117
  bin: 2.25e1
  variant carriers: 504
genotype depth: GenotypeDepth
  all individuals: 7303
  bin: 1.75e1
  variant carriers: 342
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 4.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 4.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 3.25e1
  variant carriers: 136
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 5.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 7368
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 9114
  bin: 2.75e1
  variant carriers: 379
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 734
  bin: 9.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 6282
  bin: 1.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 7.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 1.75e1
  variant carriers: 149
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 9.75e1
  variant carriers: 205
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: CT
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-89982127-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982127
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982127
    reference: chr 7
allele count: 4
allele frequency: 3.526093088857546e-5
allele num: 113440
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.34-3A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.7-3A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.7-3A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.34-3A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.34-3A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.74-3A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.7-3A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.34-3A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.85-3A>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.34-3A>T
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2618
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5030
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27977
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.34-3A>T
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD

7-89982132-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982132
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982132
    reference: chr 7
allele count: 26851
allele frequency: 2.275238531021743e-1
allele num: 118014
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.36T>C
  hgvsp: ENST00000417207.1:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.36T>C
  hgvsp: ENST00000439832.1:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.76T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.9T>C
  hgvsp: ENST00000426366.1:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.36T>C
  hgvsp: ENST00000257659.8:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.9T>C
  hgvsp: ENST00000453512.1:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.36T>C
  hgvsp: ENST00000222511.6:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.9T>C
  hgvsp: ENST00000421719.1:c.9T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.87T>C
  hgvsp: ENST00000450619.1:c.87T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.36T>C
  hgvsp: ENST00000380058.3:c.36T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.25e1
  variant carriers: 253
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 3.75e1
  variant carriers: 3071
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 6.25e1
  variant carriers: 410
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 8.25e1
  variant carriers: 163
genotype depth: GenotypeDepth
  all individuals: 1389
  bin: 7.5e0
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 2201
  bin: 1.75e1
  variant carriers: 1476
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 1.25e1
  variant carriers: 419
genotype depth: GenotypeDepth
  all individuals: 2460
  bin: 4.25e1
  variant carriers: 2079
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 5.25e1
  variant carriers: 906
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13583
  bin: 2.75e1
  variant carriers: 3891
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.75e1
  variant carriers: 195
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 5.75e1
  variant carriers: 565
genotype depth: GenotypeDepth
  all individuals: 21748
  bin: 2.25e1
  variant carriers: 2916
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 9.25e1
  variant carriers: 161
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 9.75e1
  variant carriers: 1480
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 6.75e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 6804
  bin: 3.25e1
  variant carriers: 3962
genotype quality: GenotypeQuality
hgvs: c.36T>C
num of homozygotes: 3123
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

7-89982133-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982133
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982133
    reference: chr 7
allele count: 4
allele frequency: 3.366096674296486e-5
allele num: 118832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.37G>A
  hgvsp: ENSP00000369398.3:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.37G>A
  hgvsp: ENSP00000222511.6:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.37G>A
  hgvsp: ENSP00000257659.8:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.37G>A
  hgvsp: ENSP00000416596.1:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.37G>A
  hgvsp: ENSP00000416713.1:p.Gly13Arg
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.10G>A
  hgvsp: ENSP00000405697.1:p.Gly4Arg
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.77G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.10G>A
  hgvsp: ENSP00000410311.1:p.Gly4Arg
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.88G>A
  hgvsp: ENSP00000389510.1:p.Gly30Arg
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.10G>A
  hgvsp: ENSP00000411091.1:p.Gly4Arg
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21004
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1225
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7260
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly13Arg
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ

7-89982144-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982144
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982144
    reference: chr 7
allele count: 2
allele frequency: 1.661764461505226e-5
allele num: 120354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.21C>T
  hgvsp: ENST00000421719.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.21C>T
  hgvsp: ENST00000453512.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.21C>T
  hgvsp: ENST00000426366.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.88C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.48C>T
  hgvsp: ENST00000257659.8:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.48C>T
  hgvsp: ENST00000439832.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.48C>T
  hgvsp: ENST00000380058.3:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.48C>T
  hgvsp: ENST00000417207.1:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.99C>T
  hgvsp: ENST00000450619.1:c.99C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.48C>T
  hgvsp: ENST00000222511.6:c.48C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 606
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile16Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

7-89982145-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982145
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982145
    reference: chr 7
allele count: 4
allele frequency: 3.320383836371484e-5
allele num: 120468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.22G>A
  hgvsp: ENSP00000405697.1:p.Asp8Asn
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.22G>A
  hgvsp: ENSP00000411091.1:p.Asp8Asn
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.49G>A
  hgvsp: ENSP00000416713.1:p.Asp17Asn
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.49G>A
  hgvsp: ENSP00000369398.3:p.Asp17Asn
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.49G>A
  hgvsp: ENSP00000416596.1:p.Asp17Asn
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.49G>A
  hgvsp: ENSP00000257659.8:p.Asp17Asn
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.49G>A
  hgvsp: ENSP00000222511.6:p.Asp17Asn
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.22G>A
  hgvsp: ENSP00000410311.1:p.Asp8Asn
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.100G>A
  hgvsp: ENSP00000389510.1:p.Asp34Asn
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.89G>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25593
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21860
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7379
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp17Asn
num of homozygotes: 1
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

7-89982147-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982147
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982147
    reference: chr 7
allele count: 1
allele frequency: 8.290499088045101e-6
allele num: 120620
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.24T>G
  hgvsp: ENSP00000410311.1:p.Asp8Glu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.91T>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.51T>G
  hgvsp: ENSP00000222511.6:p.Asp17Glu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.24T>G
  hgvsp: ENSP00000405697.1:p.Asp8Glu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.51T>G
  hgvsp: ENSP00000257659.8:p.Asp17Glu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.102T>G
  hgvsp: ENSP00000389510.1:p.Asp34Glu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.51T>G
  hgvsp: ENSP00000369398.3:p.Asp17Glu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.51T>G
  hgvsp: ENSP00000416596.1:p.Asp17Glu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.51T>G
  hgvsp: ENSP00000416713.1:p.Asp17Glu
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.24T>G
  hgvsp: ENSP00000411091.1:p.Asp8Glu
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1576
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp17Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

7-89982148-A-AGCTT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982148
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982152
    reference: chr 7
allele count: 1
allele frequency: 8.286102548805144e-6
allele num: 120684
alternate allele: AGCTT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.92_93insGCTT
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.103_104insGCTT
  hgvsp: ENSP00000389510.1:p.Lys35SerfsTer28
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.25_26insGCTT
  hgvsp: ENSP00000411091.1:p.Lys9SerfsTer28
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.25_26insGCTT
  hgvsp: ENSP00000405697.1:p.Lys9SerfsTer28
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.52_53insGCTT
  hgvsp: ENSP00000369398.3:p.Lys18SerfsTer28
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.25_26insGCTT
  hgvsp: ENSP00000410311.1:p.Lys9SerfsTer28
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.52_53insGCTT
  hgvsp: ENSP00000416596.1:p.Lys18SerfsTer28
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.52_53insGCTT
  hgvsp: ENSP00000416713.1:p.Lys18SerfsTer28
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.52_53insGCTT
  hgvsp: ENSP00000222511.6:p.Lys18SerfsTer28
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.52_53insGCTT
  hgvsp: ENSP00000257659.8:p.Lys18SerfsTer28
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7358
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys18SerfsTer28
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD

7-89982151-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982151
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982151
    reference: chr 7
allele count: 15
allele frequency: 1.241536857090831e-4
allele num: 120818
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.55C>T
  hgvsp: ENST00000222511.6:c.55C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.28C>T
  hgvsp: ENST00000421719.1:c.28C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.28C>T
  hgvsp: ENST00000426366.1:c.28C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.28C>T
  hgvsp: ENST00000453512.1:c.28C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.55C>T
  hgvsp: ENST00000439832.1:c.55C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.55C>T
  hgvsp: ENST00000380058.3:c.55C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.55C>T
  hgvsp: ENST00000417207.1:c.55C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.106C>T
  hgvsp: ENST00000450619.1:c.106C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.95C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.55C>T
  hgvsp: ENST00000257659.8:c.55C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7391
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22134
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25943
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Leu19Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

7-89982153-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982153
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982153
    reference: chr 7
allele count: 1
allele frequency: 8.270888127967181e-6
allele num: 120906
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.108A>G
  hgvsp: ENST00000450619.1:c.108A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.97A>G
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.30A>G
  hgvsp: ENST00000453512.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.57A>G
  hgvsp: ENST00000380058.3:c.57A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.57A>G
  hgvsp: ENST00000257659.8:c.57A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.57A>G
  hgvsp: ENST00000439832.1:c.57A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.57A>G
  hgvsp: ENST00000417207.1:c.57A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.57A>G
  hgvsp: ENST00000222511.6:c.57A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.30A>G
  hgvsp: ENST00000421719.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.30A>G
  hgvsp: ENST00000426366.1:c.30A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26028
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7397
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22178
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu19Leu
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

7-89982157-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982157
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982157
    reference: chr 7
allele count: 1
allele frequency: 8.26405302216419e-6
allele num: 121006
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.61C>T
  hgvsp: ENSP00000222511.6:p.Leu21Phe
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.61C>T
  hgvsp: ENSP00000257659.8:p.Leu21Phe
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.101C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.61C>T
  hgvsp: ENSP00000369398.3:p.Leu21Phe
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.61C>T
  hgvsp: ENSP00000416596.1:p.Leu21Phe
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.61C>T
  hgvsp: ENSP00000416713.1:p.Leu21Phe
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.34C>T
  hgvsp: ENSP00000405697.1:p.Leu12Phe
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.34C>T
  hgvsp: ENSP00000411091.1:p.Leu12Phe
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.34C>T
  hgvsp: ENSP00000410311.1:p.Leu12Phe
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.112C>T
  hgvsp: ENSP00000389510.1:p.Leu38Phe
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22299
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu21Phe
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

7-89982161-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982161
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982161
    reference: chr 7
allele count: 1
allele frequency: 8.257774694875225e-6
allele num: 121098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.65T>A
  hgvsp: ENSP00000257659.8:p.Phe22Tyr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.38T>A
  hgvsp: ENSP00000405697.1:p.Phe13Tyr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.65T>A
  hgvsp: ENSP00000369398.3:p.Phe22Tyr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.38T>A
  hgvsp: ENSP00000410311.1:p.Phe13Tyr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.65T>A
  hgvsp: ENSP00000416596.1:p.Phe22Tyr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.105T>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.38T>A
  hgvsp: ENSP00000411091.1:p.Phe13Tyr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.65T>A
  hgvsp: ENSP00000222511.6:p.Phe22Tyr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.65T>A
  hgvsp: ENSP00000416713.1:p.Phe22Tyr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.116T>A
  hgvsp: ENSP00000389510.1:p.Phe39Tyr
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7430
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe22Tyr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

7-89982177-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982177
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982177
    reference: chr 7
allele count: 4
allele frequency: 3.298642608566575e-5
allele num: 121262
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.54C>T
  hgvsp: ENST00000453512.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.121C>T
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.81C>T
  hgvsp: ENST00000380058.3:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.132C>T
  hgvsp: ENST00000450619.1:c.132C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.54C>T
  hgvsp: ENST00000426366.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.54C>T
  hgvsp: ENST00000421719.1:c.54C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.81C>T
  hgvsp: ENST00000222511.6:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.81C>T
  hgvsp: ENST00000417207.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.81C>T
  hgvsp: ENST00000257659.8:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.81C>T
  hgvsp: ENST00000439832.1:c.81C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7489
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25816
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser27Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

7-89982178-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982178
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982178
    reference: chr 7
allele count: 2
allele frequency: 1.649022129876983e-5
allele num: 121284
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.82G>A
  hgvsp: ENSP00000369398.3:p.Gly28Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.133G>A
  hgvsp: ENSP00000389510.1:p.Gly45Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.82G>A
  hgvsp: ENSP00000416713.1:p.Gly28Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.55G>A
  hgvsp: ENSP00000410311.1:p.Gly19Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.55G>A
  hgvsp: ENSP00000411091.1:p.Gly19Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.82G>A
  hgvsp: ENSP00000257659.8:p.Gly28Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.55G>A
  hgvsp: ENSP00000405697.1:p.Gly19Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.82G>A
  hgvsp: ENSP00000222511.6:p.Gly28Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.82G>A
  hgvsp: ENSP00000416596.1:p.Gly28Ser
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.122G>A
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7502
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22841
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly28Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS

7-89982185-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982185
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982185
    reference: chr 7
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.140T>C
  hgvsp: ENSP00000389510.1:p.Met47Thr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.89T>C
  hgvsp: ENSP00000369398.3:p.Met30Thr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.89T>C
  hgvsp: ENSP00000416713.1:p.Met30Thr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.89T>C
  hgvsp: ENSP00000222511.6:p.Met30Thr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.62T>C
  hgvsp: ENSP00000411091.1:p.Met21Thr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.62T>C
  hgvsp: ENSP00000405697.1:p.Met21Thr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.62T>C
  hgvsp: ENSP00000410311.1:p.Met21Thr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.89T>C
  hgvsp: ENSP00000257659.8:p.Met30Thr
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.129T>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.89T>C
  hgvsp: ENSP00000416596.1:p.Met30Thr
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7506
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25760
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met30Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-89982186-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982186
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982186
    reference: chr 7
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.90G>A
  hgvsp: ENSP00000416596.1:p.Met30Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.63G>A
  hgvsp: ENSP00000411091.1:p.Met21Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.130G>A
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.63G>A
  hgvsp: ENSP00000405697.1:p.Met21Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.90G>A
  hgvsp: ENSP00000222511.6:p.Met30Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.90G>A
  hgvsp: ENSP00000369398.3:p.Met30Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.63G>A
  hgvsp: ENSP00000410311.1:p.Met21Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.90G>A
  hgvsp: ENSP00000416713.1:p.Met30Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.90G>A
  hgvsp: ENSP00000257659.8:p.Met30Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.141G>A
  hgvsp: ENSP00000389510.1:p.Met47Ile
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met30Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

7-89982186-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 89982186
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 89982186
    reference: chr 7
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105793
  ensembl transcript: ENST00000477972
  gene symbol: GTPBP10
  hgvsc: ENST00000477972.1:n.130G>C
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000410311
  ensembl transcript: ENST00000453512
  gene symbol: GTPBP10
  hgvsc: ENST00000453512.1:c.63G>C
  hgvsp: ENSP00000410311.1:p.Met21Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000411091
  ensembl transcript: ENST00000421719
  gene symbol: GTPBP10
  hgvsc: ENST00000421719.1:c.63G>C
  hgvsp: ENSP00000411091.1:p.Met21Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416596
  ensembl transcript: ENST00000417207
  gene symbol: GTPBP10
  hgvsc: ENST00000417207.1:c.90G>C
  hgvsp: ENSP00000416596.1:p.Met30Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000222511
  ensembl transcript: ENST00000222511
  gene symbol: GTPBP10
  hgvsc: ENST00000222511.6:c.90G>C
  hgvsp: ENSP00000222511.6:p.Met30Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000389510
  ensembl transcript: ENST00000450619
  gene symbol: GTPBP10
  hgvsc: ENST00000450619.1:c.141G>C
  hgvsp: ENSP00000389510.1:p.Met47Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000416713
  ensembl transcript: ENST00000439832
  gene symbol: GTPBP10
  hgvsc: ENST00000439832.1:c.90G>C
  hgvsp: ENSP00000416713.1:p.Met30Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000405697
  ensembl transcript: ENST00000426366
  gene symbol: GTPBP10
  hgvsc: ENST00000426366.1:c.63G>C
  hgvsp: ENSP00000405697.1:p.Met21Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000369398
  ensembl transcript: ENST00000380058
  gene symbol: GTPBP10
  hgvsc: ENST00000380058.3:c.90G>C
  hgvsp: ENSP00000369398.3:p.Met30Ile
  variant of: http://identifiers.org/hgnc/25106
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105793
  ensembl protein: ENSP00000257659
  ensembl transcript: ENST00000257659
  gene symbol: GTPBP10
  hgvsc: ENST00000257659.8:c.90G>C
  hgvsp: ENSP00000257659.8:p.Met30Ile
  variant of: http://identifiers.org/hgnc/25106
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22928
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met30Ile
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40975
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 6688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.49748141041017e-5
allele num: 66704
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.045268e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.316e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

FS
type: SiteQuality
SIO_000300: 2.514e0

VQSLOD
type: SiteQuality
SIO_000300: 1.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.49e-1

QD
type: SiteQuality
SIO_000300: 9.66e0

MQ
type: SiteQuality
SIO_000300: 5.911e1

GenotypeQuality
all individuals: 23
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6688
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2242
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40975
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
SIO_000300: 5.045268e6

FS
type: SiteQuality
SIO_000300: 2.514e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.45e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.316e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 9.66e0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40977
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3522
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6693
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66710
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.028834504482675e-4
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.79e-1

FS
type: SiteQuality
SIO_000300: 2.542e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

VQSLOD
type: SiteQuality
SIO_000300: 9.12e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

QD
type: SiteQuality
SIO_000300: 1.184e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.567e0

DP
type: SiteQuality
SIO_000300: 5.045113e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3522
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.49e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

QD
type: SiteQuality
SIO_000300: 1.349e1

DP
type: SiteQuality
SIO_000300: 5.045632e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.041e0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1489
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40975
bin: 9.75e1
variant carriers: 10

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.498980693128672e-4
allele num: 66712
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 5.045632e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.49e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.71e0

QD
type: SiteQuality
SIO_000300: 1.349e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.041e0

FS
type: SiteQuality
SIO_000300: 5.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

GenotypeQuality
all individuals: 2243
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6689
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3523
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40973
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1488
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2081
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498935755613514e-5
allele num: 66714
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.06e-1

MQRankSum
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DP
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QD
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.905e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 7.75e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 5.995743022454058e-5
allele num: 66714
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
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SIO_000300: -9.06e-1

InbreedingCoeff
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SIO_000300: 0.0e0

FS
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DP
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MQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498890820792613e-5
allele num: 66716
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.52e0

MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 6.933210076265311e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.56e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.044807e6

FS
type: SiteQuality
SIO_000300: 5.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.229e-1

MQ
type: SiteQuality
SIO_000300: 5.876e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.52e0

QD
type: SiteQuality
SIO_000300: 1.196e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 14
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele count: 0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.69e-1

DP
type: SiteQuality
SIO_000300: 5.044422e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.37e0

InbreedingCoeff
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.993e1

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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DP
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.993e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.15e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

African
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East Asian
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allele count: 0
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num of homozygotes: 0

South Asian
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allele count: 7
allele frequency: 4.239854633555421e-4
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 73
allele frequency: 1.094124700239808e-3
allele num: 66720
num of homozygotes: 0

Other
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allele count: 4
allele frequency: 4.405286343612335e-3
allele num: 908
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MQRankSum
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DP
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VQSLOD
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FS
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InbreedingCoeff
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SIO_000300: 1.02e-2

ClippingRankSum
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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African
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allele count: 0
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Latino
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allele count: 0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

Other
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South Asian
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BaseQRankSum
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DP
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VQSLOD
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QD
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ReadPosRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2209

GenotypeQuality
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European (Non-Finnish)
type: Population
allele count: 1558
allele frequency: 2.335201894541203e-2
allele num: 66718
num of homozygotes: 14

African
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allele count: 123
allele frequency: 1.182010378627715e-2
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 18
allele frequency: 2.079963022879593e-3
allele num: 8654
num of homozygotes: 0

Other
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allele count: 29
allele frequency: 3.193832599118943e-2
allele num: 908
num of homozygotes: 1

Latino
type: Population
allele count: 113
allele frequency: 9.759889445500087e-3
allele num: 11578
num of homozygotes: 1

European (Finnish)
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allele count: 139
allele frequency: 2.101602661022074e-2
allele num: 6614
num of homozygotes: 1

South Asian
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allele count: 249
allele frequency: 1.508176862507571e-2
allele num: 16510
num of homozygotes: 3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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SIO_000300: 5.99e0

ClippingRankSum
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SIO_000300: -6.19e-1

ReadPosRankSum
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SIO_000300: 6.09e-1

InbreedingCoeff
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SIO_000300: 9.299999999999999e-3

DP
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SIO_000300: 5.192171e6

MQRankSum
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SIO_000300: 4.01e-1

BaseQRankSum
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SIO_000300: -3.973e0

MQ
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SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.245e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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FS
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QD
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MQ
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66720
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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InbreedingCoeff
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DP
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VQSLOD
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SIO_000300: -1.334e0

MQRankSum
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FS
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SIO_000300: 5.17e-1

QD
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SIO_000300: 1.184e1

ClippingRankSum
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SIO_000300: -1.168e0

MQ
type: SiteQuality
SIO_000300: 5.789e1

BaseQRankSum
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SIO_000300: -1.355e0

ReadPosRankSum
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SIO_000300: -9.23e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66722
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.979588e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.19e-2

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
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MQ
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SIO_000300: 5.943e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.26e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 167

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
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Latino
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allele count: 3
allele frequency: 2.591121091725686e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 168
allele frequency: 2.517910134588292e-3
allele num: 66722
num of homozygotes: 4

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
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FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 6.28e-1

InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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DP
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QD
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MQ
type: SiteQuality
SIO_000300: 5.943e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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African
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Other
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European (Finnish)
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allele num: 6614
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East Asian
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BaseQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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QD
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ClippingRankSum
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MQ
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MQRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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South Asian
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European (Non-Finnish)
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allele num: 66722
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East Asian
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European (Finnish)
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Latino
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Other
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VQSLOD
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DP
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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FS
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ReadPosRankSum
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BaseQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Finnish)
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Other
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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BaseQRankSum
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QD
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MQ
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DP
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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African
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European (Non-Finnish)
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FS
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DP
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QD
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQ
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Latino
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European (Non-Finnish)
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Other
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European (Finnish)
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FS
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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East Asian
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South Asian
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MQRankSum
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FS
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MQ
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DP
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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QD
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Other
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African
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South Asian
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Latino
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VQSLOD
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MQ
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DP
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ClippingRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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MQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Other
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African
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European (Finnish)
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Latino
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QD
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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FS
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DP
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MQRankSum
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BaseQRankSum
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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East Asian
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Latino
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Other
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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Other
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European (Non-Finnish)
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Latino
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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VQSLOD
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FS
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ReadPosRankSum
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MQ
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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QD
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DP
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele num: 16510
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African
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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MQ
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VQSLOD
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ClippingRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
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Latino
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allele frequency: 0.0e0
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South Asian
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DP
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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FS
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MQRankSum
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QD
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InbreedingCoeff
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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num of homozygotes: 0

East Asian
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European (Finnish)
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Other
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South Asian
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InbreedingCoeff
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DP
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BaseQRankSum
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MQ
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QD
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MQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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Latino
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allele frequency: 1.727414061150458e-4
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European (Finnish)
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African
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allele frequency: 5.189313857389967e-3
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East Asian
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European (Non-Finnish)
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South Asian
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DP
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MQ
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ReadPosRankSum
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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South Asian
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African
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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DP
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ReadPosRankSum
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MQ
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VQSLOD
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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African
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Other
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European (Finnish)
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European (Non-Finnish)
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South Asian
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East Asian
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FS
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VQSLOD
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BaseQRankSum
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MQRankSum
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MQ
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QD
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ReadPosRankSum
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InbreedingCoeff
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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DP
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ClippingRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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Other
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Latino
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East Asian
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African
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South Asian
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FS
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ReadPosRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

DP
type: SiteQuality
SIO_000300: 4.967452e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

QD
type: SiteQuality
SIO_000300: 1.212e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -6.55e-1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6002
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40725
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2431
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2262
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499385252046661e-5
allele num: 66694
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.27e-1

DP
type: SiteQuality
SIO_000300: 4.967452e6

QD
type: SiteQuality
SIO_000300: 1.212e1

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.95e-1

FS
type: SiteQuality
SIO_000300: 3.631e0

GenotypeQuality
all individuals: 1974
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1140
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 721
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2154
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40609
bin: 9.75e1
variant carriers: 17

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 367
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3162
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 2.258559942180866e-4
allele num: 66414
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.671179883945841e-5
allele num: 10340
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15914
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.744316194473592e-5
allele num: 11436
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.873e1

DP
type: SiteQuality
SIO_000300: 4.96694e6

QD
type: SiteQuality
SIO_000300: 1.425e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.2e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.139999999999999e-1

GenotypeQuality
all individuals: 1932
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 594
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 695
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 997
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1114
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1925
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 615
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1931
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.092145949288807e-5
allele num: 64680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5988
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14992
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.53e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-2

FS
type: SiteQuality
SIO_000300: 2.109e0

VQSLOD
type: SiteQuality
SIO_000300: -1.125e0

MQ
type: SiteQuality
SIO_000300: 5.363e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.859e0

QD
type: SiteQuality
SIO_000300: 1.14e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

DP
type: SiteQuality
SIO_000300: 4.971964e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 24

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 13

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 8

GenotypeQuality
all individuals: 56173
bin: 9.75e1
variant carriers: 27690

GenotypeQuality
all individuals: 401
bin: 7.25e1
variant carriers: 35

GenotypeQuality
all individuals: 819
bin: 6.25e1
variant carriers: 26

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 7

GenotypeQuality
all individuals: 35
bin: 2.25e1
variant carriers: 7

GenotypeQuality
all individuals: 599
bin: 6.75e1
variant carriers: 33

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 19

GenotypeQuality
all individuals: 397
bin: 8.75e1
variant carriers: 63

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 13

GenotypeQuality
all individuals: 561
bin: 8.25e1
variant carriers: 62

GenotypeQuality
all individuals: 551
bin: 9.25e1
variant carriers: 61

European (Finnish)
type: Population
allele count: 1544
allele frequency: 2.33726914925825e-1
allele num: 6606
num of homozygotes: 178

South Asian
type: Population
allele count: 4921
allele frequency: 2.982785792217238e-1
allele num: 16498
num of homozygotes: 787

East Asian
type: Population
allele count: 5774
allele frequency: 6.693716670530953e-1
allele num: 8626
num of homozygotes: 1925

African
type: Population
allele count: 3087
allele frequency: 2.967128027681661e-1
allele num: 10404
num of homozygotes: 458

European (Non-Finnish)
type: Population
allele count: 13384
allele frequency: 2.007620076200762e-1
allele num: 66666
num of homozygotes: 1343

Latino
type: Population
allele count: 5010
allele frequency: 4.334659975774355e-1
allele num: 11558
num of homozygotes: 1122

Other
type: Population
allele count: 247
allele frequency: 2.720264317180617e-1
allele num: 908
num of homozygotes: 38

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

QD
type: SiteQuality
SIO_000300: 2.333e1

DP
type: SiteQuality
SIO_000300: 4.736344e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.649999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.362e0

VQSLOD
type: SiteQuality
SIO_000300: 5.08e0

MQ
type: SiteQuality
SIO_000300: 5.636e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56173
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 551
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 3.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212268153715602e-4
allele num: 16498
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

QD
type: SiteQuality
SIO_000300: 2.333e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.649999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.636e1

DP
type: SiteQuality
SIO_000300: 4.736344e6

MQRankSum
type: SiteQuality
SIO_000300: -1.362e0

VQSLOD
type: SiteQuality
SIO_000300: 5.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

GenotypeQuality
all individuals: 1028
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35116
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 74
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 690
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1100
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.796622097114708e-5
allele num: 11368
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4920
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7048
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2694
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.182e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.456e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

DP
type: SiteQuality
SIO_000300: 3.579243e6

MQRankSum
type: SiteQuality
SIO_000300: -9.26e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.294e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.87e-1

GenotypeQuality
all individuals: 270
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1107
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3764
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38187
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 429
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1088
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 269
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8108
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5438
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.757222183172841e-5
allele num: 56908
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3466
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12704
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.274e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.194e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.030012e6

MQ
type: SiteQuality
SIO_000300: 5.885e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.447e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.06e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.01e-1

GenotypeQuality
all individuals: 383
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3145
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2885
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2148
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5800
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2366
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6371
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8423
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1872
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 1285
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.672240802675585e-3
allele num: 7774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6666
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.209774981853375e-4
allele num: 8266
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5082
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.532671461857968e-5
allele num: 39484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5288
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.89e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e-1

MQ
type: SiteQuality
SIO_000300: 4.827e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.8e-3

QD
type: SiteQuality
SIO_000300: 9.710000000000001e0

DP
type: SiteQuality
SIO_000300: 9.0244e5

FS
type: SiteQuality
SIO_000300: 3.235e0

MQRankSum
type: SiteQuality
SIO_000300: -2.793e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.8e-1

GenotypeQuality
all individuals: 4425
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5793
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 14715
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.072022722661798e-5
allele num: 39432
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5056
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.06e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-3

DP
type: SiteQuality
SIO_000300: 9.07355e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e-1

GenotypeQuality
all individuals: 1399
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1298
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14929
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5268
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.961844197138314e-4
allele num: 5032
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7766
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8286
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.06e-1

QD
type: SiteQuality
SIO_000300: 1.052e1

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.4e-3

DP
type: SiteQuality
SIO_000300: 9.08951e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

MQRankSum
type: SiteQuality
SIO_000300: -1.77e-1

GenotypeQuality
all individuals: 5758
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3721
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2140
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 442
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variant carriers: 0

GenotypeQuality
all individuals: 2404
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8228
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6682
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7804
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.976284584980237e-4
allele num: 5060
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39340
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -6.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.86e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.755e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 9.15598e5

QD
type: SiteQuality
SIO_000300: 1.162e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.389999999999999e-1

GenotypeQuality
all individuals: 1227
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
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variant carriers: 0

GenotypeQuality
all individuals: 376
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variant carriers: 0

GenotypeQuality
all individuals: 2415
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 251
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variant carriers: 0

GenotypeQuality
all individuals: 19380
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5619
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 416
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variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7795
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6978
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.88040616773223e-4
allele num: 5318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 41038
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7988
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.7865e5

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

QD
type: SiteQuality
SIO_000300: 6.8e0

VQSLOD
type: SiteQuality
SIO_000300: 1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.533e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 420
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6263
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
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variant carriers: 0

GenotypeQuality
all individuals: 260
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GenotypeQuality
all individuals: 618
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GenotypeQuality
all individuals: 155
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 991
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variant carriers: 0

GenotypeQuality
all individuals: 19732
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15608
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variant carriers: 0

GenotypeQuality
all individuals: 370
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variant carriers: 0

GenotypeQuality
all individuals: 381
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GenotypeQuality
all individuals: 4902
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variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 454
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.818181818181818e-4
allele num: 5500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 43094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.963e0

FS
type: SiteQuality
SIO_000300: 3.144e0

VQSLOD
type: SiteQuality
SIO_000300: -2.432e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

DP
type: SiteQuality
SIO_000300: 1.056318e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.873e1

QD
type: SiteQuality
SIO_000300: 1.438e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
all individuals: 21448
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 440
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GenotypeQuality
all individuals: 279
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
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GenotypeQuality
all individuals: 703
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
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variant carriers: 0

GenotypeQuality
all individuals: 2466
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2069
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18268
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 9.25e1
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GenotypeQuality
all individuals: 2427
bin: 9.75e1
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GenotypeQuality
all individuals: 279
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variant carriers: 0

GenotypeQuality
all individuals: 496
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variant carriers: 0

GenotypeQuality
all individuals: 3988
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5672
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.191924948489764e-5
allele num: 45622
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.25e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.138197e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.76e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.78e-1

QD
type: SiteQuality
SIO_000300: 8.609999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

MQRankSum
type: SiteQuality
SIO_000300: 6.01e-1

GenotypeQuality
all individuals: 1273
bin: 4.75e1
variant carriers: 61

GenotypeQuality
all individuals: 815
bin: 5.75e1
variant carriers: 18

GenotypeQuality
all individuals: 1036
bin: 5.25e1
variant carriers: 28

GenotypeQuality
all individuals: 2950
bin: 3.25e1
variant carriers: 107

GenotypeQuality
all individuals: 2218
bin: 1.75e1
variant carriers: 106

GenotypeQuality
all individuals: 2435
bin: 7.5e0
variant carriers: 117

GenotypeQuality
all individuals: 1514
bin: 4.25e1
variant carriers: 60

GenotypeQuality
all individuals: 8982
bin: 2.25e1
variant carriers: 123

GenotypeQuality
all individuals: 2297
bin: 1.25e1
variant carriers: 93

GenotypeQuality
all individuals: 393
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 13426
bin: 2.5e0
variant carriers: 89

GenotypeQuality
all individuals: 2150
bin: 3.75e1
variant carriers: 86

GenotypeQuality
all individuals: 13042
bin: 6.25e1
variant carriers: 23

GenotypeQuality
all individuals: 1530
bin: 6.75e1
variant carriers: 13

GenotypeQuality
all individuals: 562
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GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 2071
bin: 9.75e1
variant carriers: 9

European (Non-Finnish)
type: Population
allele count: 292
allele frequency: 7.913708060057456e-3
allele num: 36898
num of homozygotes: 0

Latino
type: Population
allele count: 63
allele frequency: 1.09261186264308e-2
allele num: 5766
num of homozygotes: 0

African
type: Population
allele count: 38
allele frequency: 5.368748233964397e-3
allele num: 7078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 2.104860313815538e-3
allele num: 5226
num of homozygotes: 0

East Asian
type: Population
allele count: 34
allele frequency: 6.664053312426499e-3
allele num: 5102
num of homozygotes: 0

South Asian
type: Population
allele count: 246
allele frequency: 3.933482571154461e-2
allele num: 6254
num of homozygotes: 0

Other
type: Population
allele count: 7
allele frequency: 1.178451178451178e-2
allele num: 594
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

QD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.18e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

FS
type: SiteQuality
SIO_000300: 1.457e0

DP
type: SiteQuality
SIO_000300: 1.466334e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.77e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 224
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 13426
bin: 2.5e0
variant carriers: 94

GenotypeQuality
all individuals: 2435
bin: 7.5e0
variant carriers: 138

GenotypeQuality
all individuals: 1514
bin: 4.25e1
variant carriers: 99

GenotypeQuality
all individuals: 2950
bin: 3.25e1
variant carriers: 162

GenotypeQuality
all individuals: 2297
bin: 1.25e1
variant carriers: 132

GenotypeQuality
all individuals: 8982
bin: 2.25e1
variant carriers: 188

GenotypeQuality
all individuals: 1036
bin: 5.25e1
variant carriers: 59

GenotypeQuality
all individuals: 13042
bin: 6.25e1
variant carriers: 48

GenotypeQuality
all individuals: 3023
bin: 2.75e1
variant carriers: 136

GenotypeQuality
all individuals: 1530
bin: 6.75e1
variant carriers: 27

GenotypeQuality
all individuals: 2150
bin: 3.75e1
variant carriers: 122

GenotypeQuality
all individuals: 815
bin: 5.75e1
variant carriers: 63

GenotypeQuality
all individuals: 519
bin: 7.25e1
variant carriers: 28

GenotypeQuality
all individuals: 1273
bin: 4.75e1
variant carriers: 95

GenotypeQuality
all individuals: 393
bin: 8.25e1
variant carriers: 20

GenotypeQuality
all individuals: 242
bin: 9.25e1
variant carriers: 16

European (Non-Finnish)
type: Population
allele count: 805
allele frequency: 2.181690064502141e-2
allele num: 36898
num of homozygotes: 0

East Asian
type: Population
allele count: 72
allele frequency: 1.411211289690317e-2
allele num: 5102
num of homozygotes: 0

South Asian
type: Population
allele count: 251
allele frequency: 4.013431403901503e-2
allele num: 6254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 2.104860313815538e-3
allele num: 5226
num of homozygotes: 0

Latino
type: Population
allele count: 97
allele frequency: 1.682275407561568e-2
allele num: 5766
num of homozygotes: 0

Other
type: Population
allele count: 13
allele frequency: 2.188552188552189e-2
allele num: 594
num of homozygotes: 0

African
type: Population
allele count: 58
allele frequency: 8.194405199208816e-3
allele num: 7078
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.466334e6

MQRankSum
type: SiteQuality
SIO_000300: 1.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.77e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

FS
type: SiteQuality
SIO_000300: 1.457e0

QD
type: SiteQuality
SIO_000300: 6.899999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.18e-1

GenotypeQuality
all individuals: 2015
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1633
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 900
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5380
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 127
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3224
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1094
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4121
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.824151769427216e-4
allele num: 10964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15196
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.620010368066356e-5
allele num: 61728
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10000
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.157407407407407e-3
allele num: 864
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

VQSLOD
type: SiteQuality
SIO_000300: 6.07e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.539314e6

QD
type: SiteQuality
SIO_000300: 6.54e0

GenotypeDepth
all individuals: 219
bin: 8.75e1
variant carriers: 168

GenotypeDepth
all individuals: 1644
bin: 4.75e1
variant carriers: 1389

GenotypeQuality
all individuals: 1570
bin: 2.25e1
variant carriers: 15

GenotypeQuality
all individuals: 469
bin: 8.25e1
variant carriers: 217

GenotypeQuality
all individuals: 378
bin: 4.25e1
variant carriers: 42

GenotypeQuality
all individuals: 61
bin: 1.25e1
variant carriers: 17

GenotypeQuality
all individuals: 688
bin: 7.75e1
variant carriers: 190

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 27

GenotypeQuality
all individuals: 695
bin: 7.25e1
variant carriers: 122

GenotypeQuality
all individuals: 436
bin: 2.75e1
variant carriers: 25

GenotypeQuality
all individuals: 395
bin: 4.75e1
variant carriers: 75

GenotypeQuality
all individuals: 127
bin: 2.5e0
variant carriers: 13

GenotypeQuality
all individuals: 3087
bin: 6.75e1
variant carriers: 189

GenotypeQuality
all individuals: 642
bin: 3.75e1
variant carriers: 50

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 14

GenotypeQuality
all individuals: 23006
bin: 9.75e1
variant carriers: 22159

GenotypeQuality
all individuals: 657
bin: 3.25e1
variant carriers: 41

GenotypeQuality
all individuals: 324
bin: 9.25e1
variant carriers: 215

GenotypeQuality
all individuals: 365
bin: 5.75e1
variant carriers: 57

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 122

GenotypeQuality
all individuals: 26991
bin: 6.25e1
variant carriers: 133

GenotypeQuality
all individuals: 433
bin: 5.25e1
variant carriers: 117

Other
type: Population
allele count: 219
allele frequency: 2.449664429530201e-1
allele num: 894
num of homozygotes: 28

European (Finnish)
type: Population
allele count: 1517
allele frequency: 2.318154034229829e-1
allele num: 6544
num of homozygotes: 173

Latino
type: Population
allele count: 2622
allele frequency: 2.31871241598868e-1
allele num: 11308
num of homozygotes: 290

South Asian
type: Population
allele count: 3384
allele frequency: 2.12136409227683e-1
allele num: 15952
num of homozygotes: 389

African
type: Population
allele count: 3691
allele frequency: 3.587674961119751e-1
allele num: 10288
num of homozygotes: 666

East Asian
type: Population
allele count: 2260
allele frequency: 2.66635205285512e-1
allele num: 8476
num of homozygotes: 291

European (Non-Finnish)
type: Population
allele count: 13158
allele frequency: 2.038356673689429e-1
allele num: 64552
num of homozygotes: 1286

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.7e-2

QD
type: SiteQuality
SIO_000300: 1.745e1

DP
type: SiteQuality
SIO_000300: 1.946612e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.39e0

MQ
type: SiteQuality
SIO_000300: 5.994e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.46e-1

GenotypeQuality
all individuals: 1441
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 680
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 652
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6302
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 390
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43307
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1409
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16024
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.51123595505618e-4
allele num: 11392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.32e-1

DP
type: SiteQuality
SIO_000300: 1.608232e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.159e0

QD
type: SiteQuality
SIO_000300: 1.521e1

FS
type: SiteQuality
SIO_000300: 8.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

MQ
type: SiteQuality
SIO_000300: 5.936e1

GenotypeQuality
all individuals: 6344
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 260
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1380
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1754
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1163
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46647
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.026542780182198e-5
allele num: 66082
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.59e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.087e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.53e-1

DP
type: SiteQuality
SIO_000300: 1.636699e6

MQ
type: SiteQuality
SIO_000300: 5.805e1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.61e0

QD
type: SiteQuality
SIO_000300: 1.304e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 548
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6377
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46802
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1393
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1170
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11492
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.453084754078253e-4
allele num: 16306
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66164
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.92e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.913e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.679999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.97e-2

DP
type: SiteQuality
SIO_000300: 1.639025e6

MQ
type: SiteQuality
SIO_000300: 5.917e1

GenotypeQuality
all individuals: 231
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
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variant carriers: 0

GenotypeQuality
all individuals: 582
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variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 242
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variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 144
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variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 466
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variant carriers: 0

GenotypeQuality
all individuals: 47358
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1397
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50934283213089e-5
allele num: 66254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-2

DP
type: SiteQuality
SIO_000300: 1.64127e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.84e0

QD
type: SiteQuality
SIO_000300: 1.447e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.11e0

MQ
type: SiteQuality
SIO_000300: 5.867e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.78e-1

GenotypeQuality
all individuals: 6430
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 1172
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GenotypeQuality
all individuals: 107
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GenotypeQuality
all individuals: 232
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GenotypeQuality
all individuals: 174
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GenotypeQuality
all individuals: 87
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GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 47530
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 1400
bin: 7.25e1
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GenotypeQuality
all individuals: 1752
bin: 9.75e1
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GenotypeQuality
all individuals: 104
bin: 4.25e1
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GenotypeQuality
all individuals: 243
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GenotypeQuality
all individuals: 575
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508295625942685e-5
allele num: 66300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

FS
type: SiteQuality
SIO_000300: 1.223e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.23e0

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.27e-1

DP
type: SiteQuality
SIO_000300: 1.642648e6

MQRankSum
type: SiteQuality
SIO_000300: -1.319e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.62e-1

MQ
type: SiteQuality
SIO_000300: 5.635e1

QD
type: SiteQuality
SIO_000300: 7.57e0

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 15

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.513775355737209e-4
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.108497243892888e-4
allele num: 66398
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

FS
type: SiteQuality
SIO_000300: 1.408e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.105e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

QD
type: SiteQuality
SIO_000300: 1.161e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

DP
type: SiteQuality
SIO_000300: 1.64628e6

GenotypeQuality
all individuals: 142
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 47873
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.674531575294934e-5
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66448
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -5.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.25e0

VQSLOD
type: SiteQuality
SIO_000300: 2.62e-1

FS
type: SiteQuality
SIO_000300: 1.91e0

DP
type: SiteQuality
SIO_000300: 1.64741e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-1

QD
type: SiteQuality
SIO_000300: 1.376e1

GenotypeQuality
all individuals: 6455
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 87
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variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.093845216331505e-5
allele num: 16410
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.055e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.05e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.649959e6

QD
type: SiteQuality
SIO_000300: 9.859999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 1747
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 91
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variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.671522719389525e-5
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.651865e6

VQSLOD
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.72e-1

FS
type: SiteQuality
SIO_000300: 2.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.913e0

MQRankSum
type: SiteQuality
SIO_000300: 1.61e0

QD
type: SiteQuality
SIO_000300: 1.352e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.352e0

GenotypeQuality
all individuals: 1166
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
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GenotypeQuality
all individuals: 240
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6518
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GenotypeQuality
all individuals: 48484
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000660145231951e-5
allele num: 66652
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213739531496541e-4
allele num: 16478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.955e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

FS
type: SiteQuality
SIO_000300: 5.47e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.41e0

QD
type: SiteQuality
SIO_000300: 1.393e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.01e-1

DP
type: SiteQuality
SIO_000300: 1.657441e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067224851352991e-5
allele num: 16482
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.938e1

DP
type: SiteQuality
SIO_000300: 1.657558e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.47e-1

FS
type: SiteQuality
SIO_000300: 4.22e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.064281382656155e-5
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66682
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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SIO_000300: -1.326e0

VQSLOD
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FS
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SIO_000300: 3.169e0

MQRankSum
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1389
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1730
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 224
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499655079331754e-5
allele num: 66682
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.169e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.718e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.53e-1

DP
type: SiteQuality
SIO_000300: 1.658296e6

VQSLOD
type: SiteQuality
SIO_000300: 6.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.350000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.018e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48607
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.25e1
variant carriers: 0