8-19278057-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19278057
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19278057
    reference: chr 8
allele count: 1
allele frequency: 8.285690612312537e-6
allele num: 120690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.954-28A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.954-28A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.954-28A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.954-28A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.954-28A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*347-28A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.760-28A>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2511
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1803
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1554
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1240
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1360
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
reference allele: T
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/8-19278064-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19278064
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19278064
    reference: chr 8
allele count: 2
allele frequency: 1.658017342861406e-5
allele num: 120626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.954-35G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.760-35G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.954-35G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.954-35G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.954-35G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*347-35G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.954-35G>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7120
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4678
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1802
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7068
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6512
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2512
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 49552
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 501
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

http://identifiers.org/exac.variant/8-19278068-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19278068
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19278068
    reference: chr 8
allele count: 1
allele frequency: 8.292974192264313e-6
allele num: 120584
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*347-39G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.954-39G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.760-39G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.954-39G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.954-39G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.954-39G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.954-39G>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

8-19278068-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19278068
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19278068
    reference: chr 8
allele count: 78
allele frequency: 6.468519869966164e-4
allele num: 120584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.954-39G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.954-39G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.954-39G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.954-39G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.760-39G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.954-39G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*347-39G>A
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6144
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4665
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5263
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2379
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 7113
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 7064
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD

8-19278070-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19278070
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19278070
    reference: chr 8
allele count: 1
allele frequency: 8.294074713025015e-6
allele num: 120568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.954-41A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.954-41A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.954-41A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.954-41A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.760-41A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*347-41A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.954-41A>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7063
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum

8-19278070-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19278070
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19278070
    reference: chr 8
allele count: 4
allele frequency: 3.317629885210006e-5
allele num: 120568
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*347-41A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.954-41A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.954-41A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.954-41A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.954-41A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.760-41A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.954-41A>G
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7063
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2375
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6518
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7121
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2522
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6147
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1804
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1110
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1892
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49565
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1547
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

8-19297296-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297296
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297296
    reference: chr 8
allele count: 1
allele frequency: 8.804211934989699e-6
allele num: 113582
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.953+45C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.953+45C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*346+45C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.953+45C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.759+45C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.953+45C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.953+45C>G
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14781
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10771
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11899
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5093
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9749
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2910
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4035
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4167
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

8-19297297-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297297
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297297
    reference: chr 8
allele count: 1
allele frequency: 8.803281863478704e-6
allele num: 113594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.953+44G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.759+44G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.953+44G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*346+44G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.953+44G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.953+44G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.953+44G>A
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11207
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10730
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6268
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4143
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4072
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2313
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1639
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3638
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum

8-19297301-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297301
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297301
    reference: chr 8
allele count: 1
allele frequency: 8.775932881665322e-6
allele num: 113948
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.953+40C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.759+40C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.953+40C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.953+40C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*346+40C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.953+40C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.953+40C>G
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18333
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8436
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1670
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3572
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4072
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17625
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1543
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2218
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4846
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

8-19297308-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297308
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297308
    reference: chr 8
allele count: 1
allele frequency: 8.7415643903633e-6
allele num: 114396
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.759+33C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.953+33C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.953+33C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.953+33C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.953+33C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.953+33C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*346+33C>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8734
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22557
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1755
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3668
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 899
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3915
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3605
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/8-19297313-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297313
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297313
    reference: chr 8
allele count: 1
allele frequency: 8.70852564660803e-6
allele num: 114830
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.953+28G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.953+28G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.953+28G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.759+28G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.953+28G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*346+28G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.953+28G>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24265
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1470
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3046
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3278
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3254
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1730
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3438
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 564
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum

8-19297324-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297324
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297324
    reference: chr 8
allele count: 1
allele frequency: 8.585459665510492e-6
allele num: 116476
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*346+17G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.953+17G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.953+17G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.953+17G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.953+17G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.953+17G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.759+17G>C
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3355
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28012
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4338
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5031
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2050
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29270
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/8-19297327-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297327
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297327
    reference: chr 8
allele count: 3
allele frequency: 2.561781633733541e-5
allele num: 117106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*346+14G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.953+14G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.759+14G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.953+14G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.953+14G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.953+14G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.953+14G>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9965
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1402
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS

8-19297327-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297327
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297327
    reference: chr 8
allele count: 67
allele frequency: 5.72131231533824e-4
allele num: 117106
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.953+14G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.759+14G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.953+14G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.953+14G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*346+14G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.953+14G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.953+14G>A
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9965
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 3.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3524
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28951
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1754
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1471
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30744
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1722
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 655
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 636
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5127
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

8-19297328-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297328
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297328
    reference: chr 8
allele count: 17
allele frequency: 1.445947095347453e-4
allele num: 117570
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.953+13C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.953+13C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.953+13C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.953+13C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.759+13C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.953+13C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*346+13C>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3018
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29533
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1824
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10227
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1477
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9763
  bin: 9.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum

8-19297330-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297330
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297330
    reference: chr 8
allele count: 2
allele frequency: 1.693967780732811e-5
allele num: 118066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.759+11T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.953+11T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.953+11T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.953+11T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.953+11T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*346+11T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.953+11T>C
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10531
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 461
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5376
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1297
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

8-19297331-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297331
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297331
    reference: chr 8
allele count: 2
allele frequency: 1.692047377326565e-5
allele num: 118200
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.953+10A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.953+10A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*346+10A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.953+10A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.953+10A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.759+10A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.953+10A>G
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10661
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 812
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9750
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

8-19297333-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297333
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297333
    reference: chr 8
allele count: 2
allele frequency: 1.688219603606037e-5
allele num: 118468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.953+8C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*346+8C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.953+8C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.759+8C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.953+8C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.953+8C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.953+8C>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30572
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2121
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9749
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1939
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
hgvs: c.953+8C>T
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

8-19297343-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297343
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297343
    reference: chr 8
allele count: 2
allele frequency: 1.670090351888037e-5
allele num: 119754
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*344C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.757C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.951C>G
  hgvsp: ENST00000522854.1:c.951C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.951C>G
  hgvsp: ENST00000544602.1:c.951C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.951C>G
  hgvsp: ENST00000311540.4:c.951C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.951C>G
  hgvsp: ENST00000454498.2:c.951C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.951C>G
  hgvsp: ENST00000332246.6:c.951C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11904
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 967
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31690
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1464
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
hgvs: c.951C>G
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: DP

8-19297348-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297348
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297348
    reference: chr 8
allele count: 4
allele frequency: 3.326292680492956e-5
allele num: 120254
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.946A>T
  hgvsp: ENSP00000429809.1:p.Thr316Ser
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.946A>T
  hgvsp: ENSP00000330805.6:p.Thr316Ser
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.946A>T
  hgvsp: ENSP00000411816.2:p.Thr316Ser
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.946A>T
  hgvsp: ENSP00000442155.1:p.Thr316Ser
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.946A>T
  hgvsp: ENSP00000310891.4:p.Thr316Ser
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*339A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.752A>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31954
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3797
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36584
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5669
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9753
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr316Ser
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

8-19297349-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297349
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297349
    reference: chr 8
allele count: 2
allele frequency: 1.662316937347275e-5
allele num: 120314
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.945C>G
  hgvsp: ENSP00000411816.2:p.Asn315Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.945C>G
  hgvsp: ENSP00000310891.4:p.Asn315Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.945C>G
  hgvsp: ENSP00000429809.1:p.Asn315Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.945C>G
  hgvsp: ENSP00000442155.1:p.Asn315Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.945C>G
  hgvsp: ENSP00000330805.6:p.Asn315Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*338C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.751C>G
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12339
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31984
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36817
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn315Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

8-19297350-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297350
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297350
    reference: chr 8
allele count: 1
allele frequency: 8.306199747491528e-6
allele num: 120392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*337A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.944A>G
  hgvsp: ENSP00000310891.4:p.Asn315Ser
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.944A>G
  hgvsp: ENSP00000411816.2:p.Asn315Ser
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.944A>G
  hgvsp: ENSP00000442155.1:p.Asn315Ser
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.944A>G
  hgvsp: ENSP00000330805.6:p.Asn315Ser
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.944A>G
  hgvsp: ENSP00000429809.1:p.Asn315Ser
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.750A>G
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12383
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32072
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 142
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9749
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5710
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asn315Ser
num of homozygotes: 0
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

8-19297351-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297351
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297351
    reference: chr 8
allele count: 1
allele frequency: 8.300959590928711e-6
allele num: 120468
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*336A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.943A>T
  hgvsp: ENSP00000442155.1:p.Asn315Tyr
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.943A>T
  hgvsp: ENSP00000310891.4:p.Asn315Tyr
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.749A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.943A>T
  hgvsp: ENSP00000330805.6:p.Asn315Tyr
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.943A>T
  hgvsp: ENSP00000429809.1:p.Asn315Tyr
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.943A>T
  hgvsp: ENSP00000411816.2:p.Asn315Tyr
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5727
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1985
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn315Tyr
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

8-19297357-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297357
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297357
    reference: chr 8
allele count: 6
allele frequency: 4.968861799390487e-5
allele num: 120752
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.937C>T
  hgvsp: ENSP00000411816.2:p.Leu313Phe
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*330C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.937C>T
  hgvsp: ENSP00000442155.1:p.Leu313Phe
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.937C>T
  hgvsp: ENSP00000429809.1:p.Leu313Phe
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.937C>T
  hgvsp: ENSP00000330805.6:p.Leu313Phe
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.937C>T
  hgvsp: ENSP00000310891.4:p.Leu313Phe
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.743C>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3864
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32411
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37655
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu313Phe
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

8-19297362-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297362
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297362
    reference: chr 8
allele count: 1
allele frequency: 8.268699664290793e-6
allele num: 120938
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.932G>C
  hgvsp: ENSP00000442155.1:p.Gly311Ala
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.932G>C
  hgvsp: ENSP00000429809.1:p.Gly311Ala
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.932G>C
  hgvsp: ENSP00000310891.4:p.Gly311Ala
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*325G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.738G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.932G>C
  hgvsp: ENSP00000330805.6:p.Gly311Ala
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.932G>C
  hgvsp: ENSP00000411816.2:p.Gly311Ala
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12748
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9787
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5787
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1862
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Gly311Ala
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP

8-19297362-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297362
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297362
    reference: chr 8
allele count: 68
allele frequency: 5.62271577171774e-4
allele num: 120938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.932G>A
  hgvsp: ENSP00000310891.4:p.Gly311Glu
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.932G>A
  hgvsp: ENSP00000429809.1:p.Gly311Glu
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.738G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*325G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.932G>A
  hgvsp: ENSP00000442155.1:p.Gly311Glu
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.932G>A
  hgvsp: ENSP00000330805.6:p.Gly311Glu
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.932G>A
  hgvsp: ENSP00000411816.2:p.Gly311Glu
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12748
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 4.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32488
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly311Glu
num of homozygotes: 1
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

8-19297364-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297364
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297364
    reference: chr 8
allele count: 5
allele frequency: 4.132572939912389e-5
allele num: 120990
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.930A>G
  hgvsp: ENST00000454498.2:c.930A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*323A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.930A>G
  hgvsp: ENST00000332246.6:c.930A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.930A>G
  hgvsp: ENST00000311540.4:c.930A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.736A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.930A>G
  hgvsp: ENST00000522854.1:c.930A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.930A>G
  hgvsp: ENST00000544602.1:c.930A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32495
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12833
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Lys310Lys
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

8-19297367-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297367
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297367
    reference: chr 8
allele count: 1
allele frequency: 8.261731658955718e-6
allele num: 121040
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.927C>G
  hgvsp: ENST00000522854.1:c.927C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*320C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.927C>G
  hgvsp: ENST00000332246.6:c.927C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.927C>G
  hgvsp: ENST00000454498.2:c.927C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.927C>G
  hgvsp: ENST00000544602.1:c.927C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.733C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.927C>G
  hgvsp: ENST00000311540.4:c.927C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12886
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2012
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9750
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Val309Val
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

8-19297373-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297373
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297373
    reference: chr 8
allele count: 3
allele frequency: 2.47614645580904e-5
allele num: 121156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*314T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.921T>C
  hgvsp: ENST00000332246.6:c.921T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.921T>C
  hgvsp: ENST00000522854.1:c.921T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.921T>C
  hgvsp: ENST00000311540.4:c.921T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.921T>C
  hgvsp: ENST00000544602.1:c.921T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.727T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.921T>C
  hgvsp: ENST00000454498.2:c.921T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12948
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9752
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 703
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38363
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn307Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

8-19297381-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297381
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297381
    reference: chr 8
allele count: 1
allele frequency: 8.248919391559706e-6
allele num: 121228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.913G>A
  hgvsp: ENSP00000429809.1:p.Glu305Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.913G>A
  hgvsp: ENSP00000330805.6:p.Glu305Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.913G>A
  hgvsp: ENSP00000411816.2:p.Glu305Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.913G>A
  hgvsp: ENSP00000442155.1:p.Glu305Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.913G>A
  hgvsp: ENSP00000310891.4:p.Glu305Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*306G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.719G>A
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3912
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12993
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5840
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38446
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Glu305Lys
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

8-19297384-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297384
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297384
    reference: chr 8
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.910G>C
  hgvsp: ENSP00000330805.6:p.Glu304Gln
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.910G>C
  hgvsp: ENSP00000442155.1:p.Glu304Gln
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.910G>C
  hgvsp: ENSP00000310891.4:p.Glu304Gln
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.716G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.910G>C
  hgvsp: ENSP00000429809.1:p.Glu304Gln
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*303G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.910G>C
  hgvsp: ENSP00000411816.2:p.Glu304Gln
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu304Gln
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

8-19297384-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297384
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297384
    reference: chr 8
allele count: 1
allele frequency: 8.248239000973292e-6
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.910G>A
  hgvsp: ENSP00000442155.1:p.Glu304Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.716G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.910G>A
  hgvsp: ENSP00000411816.2:p.Glu304Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.910G>A
  hgvsp: ENSP00000310891.4:p.Glu304Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.910G>A
  hgvsp: ENSP00000429809.1:p.Glu304Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.910G>A
  hgvsp: ENSP00000330805.6:p.Glu304Lys
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*303G>A
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1481
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32619
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13017
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1877
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38447
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu304Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum

8-19297385-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297385
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297385
    reference: chr 8
allele count: 15
allele frequency: 1.237195031424754e-4
allele num: 121242
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*302A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.909A>G
  hgvsp: ENST00000522854.1:c.909A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.909A>G
  hgvsp: ENST00000454498.2:c.909A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.909A>G
  hgvsp: ENST00000332246.6:c.909A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.909A>G
  hgvsp: ENST00000311540.4:c.909A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.715A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.909A>G
  hgvsp: ENST00000544602.1:c.909A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1486
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 32616
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3911
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5843
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Lys303Lys
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum

8-19297398-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297398
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297398
    reference: chr 8
allele count: 2
allele frequency: 1.649049323065253e-5
allele num: 121282
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*289T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.896T>C
  hgvsp: ENSP00000429809.1:p.Val299Ala
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*289T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.702T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.896T>C
  hgvsp: ENSP00000310891.4:p.Val299Ala
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.896T>C
  hgvsp: ENSP00000442155.1:p.Val299Ala
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.896T>C
  hgvsp: ENSP00000330805.6:p.Val299Ala
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.896T>C
  hgvsp: ENSP00000411816.2:p.Val299Ala
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1483
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32582
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Val299Ala
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

8-19297399-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297399
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297399
    reference: chr 8
allele count: 1
allele frequency: 8.244974687927709e-6
allele num: 121286
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.895G>A
  hgvsp: ENSP00000411816.2:p.Val299Ile
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.895G>A
  hgvsp: ENSP00000429809.1:p.Val299Ile
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.701G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*288G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.895G>A
  hgvsp: ENSP00000310891.4:p.Val299Ile
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.895G>A
  hgvsp: ENSP00000442155.1:p.Val299Ile
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.895G>A
  hgvsp: ENSP00000330805.6:p.Val299Ile
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*288G>A
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val299Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS

8-19297400-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297400
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297400
    reference: chr 8
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.894T>C
  hgvsp: ENST00000332246.6:c.894T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.700T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*287T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.894T>C
  hgvsp: ENST00000454498.2:c.894T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.894T>C
  hgvsp: ENST00000544602.1:c.894T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.894T>C
  hgvsp: ENST00000311540.4:c.894T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.894T>C
  hgvsp: ENST00000522854.1:c.894T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*287T>C
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3916
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38500
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val298Val
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/8-19297418-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297418
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297418
    reference: chr 8
allele count: 4
allele frequency: 3.297989875171083e-5
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.876G>T
  hgvsp: ENST00000544602.1:c.876G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.876G>T
  hgvsp: ENST00000454498.2:c.876G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.876G>T
  hgvsp: ENST00000332246.6:c.876G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.876G>T
  hgvsp: ENST00000311540.4:c.876G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*269G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.876G>T
  hgvsp: ENST00000522854.1:c.876G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.682G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*269G>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32497
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9755
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly292Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

8-19297419-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297419
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297419
    reference: chr 8
allele count: 1
allele frequency: 8.24551856066228e-6
allele num: 121278
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.875G>A
  hgvsp: ENSP00000310891.4:p.Gly292Glu
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.875G>A
  hgvsp: ENSP00000429809.1:p.Gly292Glu
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.681G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*268G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*268G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.875G>A
  hgvsp: ENSP00000330805.6:p.Gly292Glu
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.875G>A
  hgvsp: ENSP00000442155.1:p.Gly292Glu
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.875G>A
  hgvsp: ENSP00000411816.2:p.Gly292Glu
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3925
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9752
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5857
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly292Glu
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

8-19297421-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297421
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297421
    reference: chr 8
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*266T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.873T>C
  hgvsp: ENST00000311540.4:c.873T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.873T>C
  hgvsp: ENST00000544602.1:c.873T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.873T>C
  hgvsp: ENST00000522854.1:c.873T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*266T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.873T>C
  hgvsp: ENST00000332246.6:c.873T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.873T>C
  hgvsp: ENST00000454498.2:c.873T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.679T>C
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32471
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp291Asp
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum

8-19297423-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297423
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297423
    reference: chr 8
allele count: 1
allele frequency: 8.245926512302922e-6
allele num: 121272
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*264G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.871G>A
  hgvsp: ENSP00000330805.6:p.Asp291Asn
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.871G>A
  hgvsp: ENSP00000442155.1:p.Asp291Asn
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.871G>A
  hgvsp: ENSP00000310891.4:p.Asp291Asn
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.871G>A
  hgvsp: ENSP00000411816.2:p.Asp291Asn
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.677G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.871G>A
  hgvsp: ENSP00000429809.1:p.Asp291Asn
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*264G>A
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3927
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asp291Asn
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS

8-19297427-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297427
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297427
    reference: chr 8
allele count: 2
allele frequency: 1.649348507339601e-5
allele num: 121260
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*260G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.867G>C
  hgvsp: ENSP00000429809.1:p.Glu289Asp
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.867G>C
  hgvsp: ENSP00000442155.1:p.Glu289Asp
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.673G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.867G>C
  hgvsp: ENSP00000330805.6:p.Glu289Asp
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*260G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.867G>C
  hgvsp: ENSP00000411816.2:p.Glu289Asp
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.867G>C
  hgvsp: ENSP00000310891.4:p.Glu289Asp
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32429
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 544
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Glu289Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

8-19297438-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297438
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297438
    reference: chr 8
allele count: 1
allele frequency: 8.253276550790664e-6
allele num: 121164
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.856A>G
  hgvsp: ENSP00000310891.4:p.Met286Val
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.856A>G
  hgvsp: ENSP00000442155.1:p.Met286Val
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.856A>G
  hgvsp: ENSP00000411816.2:p.Met286Val
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.856A>G
  hgvsp: ENSP00000429809.1:p.Met286Val
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*249A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*249A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.856A>G
  hgvsp: ENSP00000330805.6:p.Met286Val
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.662A>G
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32188
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9753
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Met286Val
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

8-19297446-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297446
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297446
    reference: chr 8
allele count: 1
allele frequency: 8.257092842751923e-6
allele num: 121108
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.852-4C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.852-4C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*245-4C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.658-4C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.852-4C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.852-4C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*245-4C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.852-4C>G
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 759
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1992
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
hgvs: c.852-4C>G
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

8-19297451-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297451
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297451
    reference: chr 8
allele count: 4
allele frequency: 3.304310473012045e-5
allele num: 121054
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.852-9G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.658-9G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*245-9G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*245-9G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.852-9G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.852-9G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.852-9G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.852-9G>C
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1302
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5778
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

8-19297455-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297455
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297455
    reference: chr 8
allele count: 2
allele frequency: 1.652919882973272e-5
allele num: 120998
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.852-13T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.852-13T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.852-13T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*245-13T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.852-13T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*245-13T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.658-13T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.852-13T>C
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13136
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3926
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31003
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 250
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1979
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5737
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36846
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 702
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
reference allele: A
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

8-19297456-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297456
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297456
    reference: chr 8
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.658-14G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.852-14G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.852-14G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.852-14G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*245-14G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*245-14G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.852-14G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.852-14G>A
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 413
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9751
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ

8-19297463-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297463
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297463
    reference: chr 8
allele count: 1
allele frequency: 8.27417299640901e-6
allele num: 120858
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*245-21T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.852-21T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.852-21T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.852-21T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.852-21T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*245-21T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.852-21T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.658-21T>C
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 781
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 700
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34936
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 805
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-19297466-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297466
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297466
    reference: chr 8
allele count: 1
allele frequency: 8.277460475126231e-6
allele num: 120810
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.852-24A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*245-24A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.852-24A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.658-24A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*245-24A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.852-24A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.852-24A>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.852-24A>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1397
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1892
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1809
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

8-19297471-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297471
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297471
    reference: chr 8
allele count: 1
allele frequency: 8.286514526259965e-6
allele num: 120678
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.852-29G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.852-29G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.658-29G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.852-29G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*245-29G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*245-29G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.852-29G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.852-29G>A
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12248
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 900
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 961
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1781
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1719
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

8-19297472-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297472
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297472
    reference: chr 8
allele count: 1
allele frequency: 8.286789200656313e-6
allele num: 120674
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.852-30T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*245-30T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.852-30T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.852-30T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*245-30T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.852-30T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.852-30T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.658-30T>C
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3932
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 783
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12281
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3865
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26756
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1482
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 538
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 968
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1717
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: QD

8-19297483-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297483
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297483
    reference: chr 8
allele count: 10
allele frequency: 8.306613725848521e-5
allele num: 120386
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.658-41G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*245-41G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.852-41G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.852-41G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.852-41G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.852-41G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*245-41G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.852-41G>A
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8210
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 958
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2738
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3800
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23476
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11092
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2635
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2885
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1688
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4929
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3582
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP

8-19297484-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297484
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297484
    reference: chr 8
allele count: 1
allele frequency: 8.302475798283047e-6
allele num: 120446
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.658-42T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.852-42T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.852-42T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.852-42T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*245-42T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*245-42T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.852-42T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.852-42T>C
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3751
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23520
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11106
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8199
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1398
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3589
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2886
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/8-19297493-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297493
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297493
    reference: chr 8
allele count: 16
allele frequency: 1.334334083896256e-4
allele num: 119910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*245-51G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.852-51G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.852-51G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.852-51G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.852-51G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.658-51G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*245-51G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.852-51G>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11827
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8099
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22681
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1885
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

8-19297493-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19297493
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19297493
    reference: chr 8
allele count: 2
allele frequency: 1.667917604870319e-5
allele num: 119910
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.852-51G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.658-51G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.852-51G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.852-51G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.852-51G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.852-51G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*245-51G>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*245-51G>C
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 777
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11827
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8099
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4712
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4129
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1765
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2627
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16151
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD

8-19314993-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19314993
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19314993
    reference: chr 8
allele count: 6
allele frequency: 6.960556844547564e-3
allele num: 862
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+944C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.657+48C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*244+48C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+944C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+944C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+944C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+944C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*244+48C>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1121
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
num of homozygotes: 1
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/8-19315008-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315008
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315008
    reference: chr 8
allele count: 2
allele frequency: 1.972386587771203e-3
allele num: 1014
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+929G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+929G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*244+33G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*244+33G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+929G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.657+33G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+929G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+929G>T
  variant of: http://identifiers.org/hgnc/24290
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3122
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

8-19315034-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315034
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315034
    reference: chr 8
allele count: 2730
allele frequency: 5.649834437086093e-1
allele num: 4832
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*244+7C>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*244+7C>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+903C>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+903C>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+903C>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.657+7C>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+903C>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+903C>A
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 2.5e0
  variant carriers: 450
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.25e1
  variant carriers: 109
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 7.5e0
  variant carriers: 1399
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.75e1
  variant carriers: 517
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1800
  bin: 1.25e1
  variant carriers: 1475
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1436
  bin: 2.25e1
  variant carriers: 259
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 1.75e1
  variant carriers: 210
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.25e1
  variant carriers: 194
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 4.25e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 8.25e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 7.5e0
  variant carriers: 257
hgvs: c.*244+7C>A
num of homozygotes: 626
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

8-19315039-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315039
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315039
    reference: chr 8
allele count: 12
allele frequency: 2.420330778539734e-3
allele num: 4958
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.657+2T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+898T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+898T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+898T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+898T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+898T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*244+2T>C
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*244+2T>C
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4332
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2412
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3874
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
hgvs: c.*244+2T>C
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-19315049-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315049
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315049
    reference: chr 8
allele count: 16
allele frequency: 2.822865208186309e-3
allele num: 5668
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+888C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+888C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.649C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*236C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+888C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*236C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+888C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+888C>T
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 609
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4742
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

8-19315054-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315054
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315054
    reference: chr 8
allele count: 1
allele frequency: 1.608234158893535e-4
allele num: 6218
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*231C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+883C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.644C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+883C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+883C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+883C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*231C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+883C>T
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5069
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 638
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4567
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

8-19315055-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315055
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315055
    reference: chr 8
allele count: 1
allele frequency: 1.678415575696542e-4
allele num: 5958
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+882A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+882A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*230A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+882A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*230A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+882A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.643A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+882A>G
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5134
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 664
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4556
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ

8-19315073-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315073
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315073
    reference: chr 8
allele count: 2
allele frequency: 2.528445006321112e-4
allele num: 7910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*212C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+864C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.625C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+864C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+864C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*212C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+864C>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+864C>T
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6785
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6219
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2048
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD

http://identifiers.org/exac.variant/8-19315078-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315078
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315078
    reference: chr 8
allele count: 19
allele frequency: 2.273815222594543e-3
allele num: 8356
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+859G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+859G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*207G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*207G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+859G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.620G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+859G>T
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+859G>T
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 9.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 6440
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 280
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

8-19315078-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315078
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315078
    reference: chr 8
allele count: 1
allele frequency: 1.196744853997128e-4
allele num: 8356
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.620G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*207G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+859G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+859G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*207G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+859G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+859G>A
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+859G>A
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

8-19315079-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315079
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315079
    reference: chr 8
allele count: 1
allele frequency: 1.172882946281961e-4
allele num: 8526
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+858C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*206C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+858C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*206C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+858C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.619C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+858C>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+858C>G
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

8-19315091-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315091
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315091
    reference: chr 8
allele count: 3
allele frequency: 3.007217321571772e-4
allele num: 9976
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*194A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+846A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+846A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*194A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.607A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+846A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+846A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+846A>G
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2535
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8501
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/8-19315123-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315123
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315124
    reference: chr 8
allele count: 9
allele frequency: 9.159373091797273e-4
allele num: 9826
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*161dupT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+813dupT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.574dupT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*161dupT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+813dupT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+813dupT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+813dupT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+813dupT
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19802
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/8-19315123-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315123
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315122
    reference: chr 8
allele count: 11
allele frequency: 1.119478933441889e-3
allele num: 9826
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*161delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+813delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*161delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+813delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+813delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+813delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+813delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.574delT
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 19802
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1472
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 994
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 965
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 17522
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: CA
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

8-19315137-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315137
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315136
    reference: chr 8
allele count: 1
allele frequency: 7.864108210128971e-5
allele num: 12716
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*147delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+799delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+799delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+799delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.560delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+799delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*147delT
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+799delT
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: 3' UTR
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 371
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2114
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2498
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: TA
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum

8-19315156-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315156
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315156
    reference: chr 8
allele count: 0
allele frequency: 0.0e0
allele num: 14120
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+781A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.542A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+781A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*129A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*129A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+781A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+781A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+781A>G
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1107
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34762
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7556
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33460
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6614
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 1.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: QD

8-19315167-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 19315167
    reference: chr 8
  end: Position
    type: ExactPosition
    position: 19315167
    reference: chr 8
allele count: 1
allele frequency: 6.825938566552901e-5
allele num: 14650
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000381084
  ensembl transcript: ENST00000397998
  gene symbol: CSGALNACT1
  hgvsc: ENST00000397998.3:c.*118A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000429809
  ensembl transcript: ENST00000522854
  gene symbol: CSGALNACT1
  hgvsc: ENST00000522854.1:c.851+770A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000411816
  ensembl transcript: ENST00000454498
  gene symbol: CSGALNACT1
  hgvsc: ENST00000454498.2:c.851+770A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000147408
  ensembl transcript: ENST00000518542
  gene symbol: CSGALNACT1
  hgvsc: ENST00000518542.1:n.531A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000330805
  ensembl transcript: ENST00000332246
  gene symbol: CSGALNACT1
  hgvsc: ENST00000332246.6:c.851+770A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000428216
  ensembl transcript: ENST00000519222
  gene symbol: CSGALNACT1
  hgvsc: ENST00000519222.1:c.*118A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000310891
  ensembl transcript: ENST00000311540
  gene symbol: CSGALNACT1
  hgvsc: ENST00000311540.4:c.851+770A>G
  variant of: http://identifiers.org/hgnc/24290
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000147408
  ensembl protein: ENSP00000442155
  ensembl transcript: ENST00000544602
  gene symbol: CSGALNACT1
  hgvsc: ENST00000544602.1:c.851+770A>G
  variant of: http://identifiers.org/hgnc/24290
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32934
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 623
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 992
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum

GenotypeQuality
all individuals: 37
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49552
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1895
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.0790273556231e-5
allele num: 16450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10234
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.54e-1

QD
type: SiteQuality
SIO_000300: 1.248e1

VQSLOD
type: SiteQuality
SIO_000300: 3.88e-1

DP
type: SiteQuality
SIO_000300: 3.360267e6

MQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

GenotypeQuality
all individuals: 49
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1895
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 784
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1342
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1172
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1113
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele frequency: 3.01559060341968e-5
allele num: 66322
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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East Asian
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South Asian
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allele frequency: 0.0e0
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African
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Other
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Latino
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VQSLOD
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InbreedingCoeff
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ReadPosRankSum
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QD
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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SIO_000300: -4.376e0

MQ
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SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508341126429153e-5
allele num: 66298
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South Asian
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Latino
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East Asian
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allele frequency: 0.0e0
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African
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Other
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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FS
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ClippingRankSum
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DP
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ReadPosRankSum
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MQ
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SIO_000300: 5.979e1

BaseQRankSum
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SIO_000300: -4.983e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 3.016682252858306e-5
allele num: 66298
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 7.151253918495298e-3
allele num: 10208
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Other
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South Asian
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East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 1.737619461337967e-4
allele num: 11510
num of homozygotes: 0

InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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FS
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MQ
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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QD
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SIO_000300: 1.362e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6612
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African
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allele count: 1
allele frequency: 9.801999607920016e-5
allele num: 10202
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66288
num of homozygotes: 0

Latino
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: 2.3e-3

MQ
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QD
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FS
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MQRankSum
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DP
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VQSLOD
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BaseQRankSum
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SIO_000300: 1.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 4
allele frequency: 3.920799843168006e-4
allele num: 10202
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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East Asian
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QD
type: SiteQuality
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FS
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 3.357332e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6388
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.609787508048938e-5
allele num: 62120
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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African
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South Asian
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Latino
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 7.94e-1

ReadPosRankSum
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DP
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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SIO_000300: -4.243e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
type: Population
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African
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allele num: 9806
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East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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DP
type: SiteQuality
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MQRankSum
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MQ
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
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QD
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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African
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European (Non-Finnish)
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allele num: 62356
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East Asian
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Other
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Latino
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South Asian
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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DP
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FS
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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East Asian
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Latino
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European (Finnish)
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South Asian
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European (Non-Finnish)
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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DP
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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VQSLOD
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FS
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QD
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MQ
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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DP
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ClippingRankSum
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 727
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1848
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9753
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63912
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11070
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.998000399920016e-5
allele num: 10002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16092
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.826591e6

QD
type: SiteQuality
SIO_000300: 1.39e1

VQSLOD
type: SiteQuality
SIO_000300: -7.069e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.416e0

MQ
type: SiteQuality
SIO_000300: 5.874e1

FS
type: SiteQuality
SIO_000300: 8.601000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.87e-1

GenotypeQuality
all individuals: 2314
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 579
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1712
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5127
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9804
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.203473945409429e-5
allele num: 16120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10046
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.446782481037436e-4
allele num: 8174
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.846934e6

MQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1402
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1870
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9804
bin: 9.75e1
variant carriers: 67

GenotypeQuality
all individuals: 1090
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2314
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6466
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.697841726618705e-4
allele num: 11120
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.109936246306951e-5
allele num: 64310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8174
num of homozygotes: 0

African
type: Population
allele count: 62
allele frequency: 6.171610591280112e-3
allele num: 10046
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.79e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.9e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.46e-1

QD
type: SiteQuality
SIO_000300: 1.426e1

VQSLOD
type: SiteQuality
SIO_000300: 5.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

DP
type: SiteQuality
SIO_000300: 1.846934e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.59e-1

GenotypeQuality
all individuals: 1172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
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GenotypeQuality
all individuals: 5260
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 954
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variant carriers: 0

GenotypeQuality
all individuals: 2114
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31887
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 1895
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variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.094890510948905e-3
allele num: 8220
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11166
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.920634920634921e-5
allele num: 10080
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.857355126300148e-4
allele num: 16152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.192525621574759e-5
allele num: 64594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.936e1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-1

QD
type: SiteQuality
SIO_000300: 1.298e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 2.92e0

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

FS
type: SiteQuality
SIO_000300: 3.874e0

DP
type: SiteQuality
SIO_000300: 1.857002e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1781
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1918
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 1871
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variant carriers: 0

GenotypeQuality
all individuals: 922
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variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 444
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variant carriers: 0

GenotypeQuality
all individuals: 32926
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9749
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.785076758300607e-4
allele num: 11204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16176
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64916
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.09e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.32e0

FS
type: SiteQuality
SIO_000300: 1.787e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

DP
type: SiteQuality
SIO_000300: 1.868287e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

QD
type: SiteQuality
SIO_000300: 1.362e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

GenotypeQuality
all individuals: 32204
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5397
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variant carriers: 0

GenotypeQuality
all individuals: 787
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variant carriers: 0

GenotypeQuality
all individuals: 766
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variant carriers: 0

GenotypeQuality
all individuals: 1297
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variant carriers: 0

GenotypeQuality
all individuals: 1783
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variant carriers: 0

GenotypeQuality
all individuals: 542
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variant carriers: 0

GenotypeQuality
all individuals: 1922
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.076828405279837e-5
allele num: 65002
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16182
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11218
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
SIO_000300: 1.871223e6

MQRankSum
type: SiteQuality
SIO_000300: -1.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.429999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 4.843e0

QD
type: SiteQuality
SIO_000300: 1.419e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.47e0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 699
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variant carriers: 0

GenotypeQuality
all individuals: 582
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variant carriers: 0

GenotypeQuality
all individuals: 1301
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 703
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GenotypeQuality
all individuals: 33327
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variant carriers: 0

GenotypeQuality
all individuals: 1784
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GenotypeQuality
all individuals: 440
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variant carriers: 0

GenotypeQuality
all individuals: 322
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variant carriers: 0

GenotypeQuality
all individuals: 5421
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10118
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8354
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16200
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.069179301454791e-5
allele num: 65164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11246
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -8.681e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.87e-1

DP
type: SiteQuality
SIO_000300: 1.87954e6

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

QD
type: SiteQuality
SIO_000300: 6.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.119e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.33e-1

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
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GenotypeQuality
all individuals: 35846
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variant carriers: 0

GenotypeQuality
all individuals: 1959
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 1824
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GenotypeQuality
all individuals: 271
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GenotypeQuality
all individuals: 5566
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variant carriers: 0

GenotypeQuality
all individuals: 353
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variant carriers: 0

GenotypeQuality
all individuals: 9751
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variant carriers: 2

GenotypeQuality
all individuals: 507
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1312
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.033796492931254e-5
allele num: 65924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.504e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 2.553e1

FS
type: SiteQuality
SIO_000300: 1.316e0

VQSLOD
type: SiteQuality
SIO_000300: 4.81e-1

DP
type: SiteQuality
SIO_000300: 1.910334e6

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1832
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 1981
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variant carriers: 0

GenotypeQuality
all individuals: 99
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variant carriers: 0

GenotypeQuality
all individuals: 196
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.75561797752809e-4
allele num: 11392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510665296996797e-5
allele num: 66196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.114711997064938e-5
allele num: 16354
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.289e1

DP
type: SiteQuality
SIO_000300: 1.919213e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.16e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

GenotypeQuality
all individuals: 1316
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5688
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9751
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 321
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1833
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1985
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 704
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66218
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.111722283339445e-5
allele num: 16362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.168224299065421e-4
allele num: 8560
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10302
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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InbreedingCoeff
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SIO_000300: -2.0e-4

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.88e-1

FS
type: SiteQuality
SIO_000300: 1.162e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

QD
type: SiteQuality
SIO_000300: 6.75e0

MQRankSum
type: SiteQuality
SIO_000300: 2.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.23e-1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.509206157561123e-5
allele num: 66260
num of homozygotes: 0

DP
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BaseQRankSum
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ReadPosRankSum
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MQ
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QD
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MQRankSum
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FS
type: SiteQuality
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VQSLOD
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InbreedingCoeff
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SIO_000300: -2.0e-4

ClippingRankSum
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SIO_000300: 1.05e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
allele num: 10326
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Latino
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allele frequency: 0.0e0
allele num: 11418
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508523155830442e-5
allele num: 66290
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

ReadPosRankSum
type: SiteQuality
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DP
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QD
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VQSLOD
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InbreedingCoeff
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SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: 1.11e0

BaseQRankSum
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SIO_000300: -3.412e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 9.030432557719515e-5
allele num: 66442
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8598
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16436
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.876e0

MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

DP
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FS
type: SiteQuality
SIO_000300: 5.706e0

QD
type: SiteQuality
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VQSLOD
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SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.502900598154438e-5
allele num: 66538
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.894e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.35e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.425e0

QD
type: SiteQuality
SIO_000300: 1.202e1

DP
type: SiteQuality
SIO_000300: 1.93643e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 66

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11472
num of homozygotes: 0

South Asian
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allele count: 68
allele frequency: 4.133236080719669e-3
allele num: 16452
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10368
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
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BaseQRankSum
type: SiteQuality
SIO_000300: -3.425e0

FS
type: SiteQuality
SIO_000300: 1.894e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.6e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 2.35e-2

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66552
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East Asian
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Latino
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allele frequency: 4.35691878703381e-4
allele num: 11476
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
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QD
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
type: Population
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Latino
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African
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allele frequency: 9.632055480639569e-5
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European (Finnish)
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European (Non-Finnish)
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East Asian
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FS
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MQ
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QD
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VQSLOD
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 2.608242044861763e-4
allele num: 11502
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European (Finnish)
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European (Non-Finnish)
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East Asian
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African
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South Asian
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Other
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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MQ
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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DP
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ClippingRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele num: 16496
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Other
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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MQ
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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SIO_000300: -1.493e0

ReadPosRankSum
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SIO_000300: 1.89e0

QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
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allele count: 2
allele frequency: 1.212268153715602e-4
allele num: 16498
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
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MQ
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ClippingRankSum
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DP
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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FS
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QD
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InbreedingCoeff
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SIO_000300: 1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele frequency: 8.685079034219212e-5
allele num: 11514
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66680
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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ReadPosRankSum
type: SiteQuality
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DP
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SIO_000300: 1.941161e6

QD
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MQ
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11514
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 4.849072614862408e-4
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 7
allele frequency: 1.049790041991602e-4
allele num: 66680
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

VQSLOD
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DP
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SIO_000300: 1.941937e6

MQRankSum
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SIO_000300: -1.4e-2

BaseQRankSum
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ReadPosRankSum
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SIO_000300: 6.96e-1

InbreedingCoeff
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SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.411e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.85e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.998320940273447e-5
allele num: 66704
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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Other
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South Asian
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InbreedingCoeff
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SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 2.797e0

ClippingRankSum
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SIO_000300: -2.96e-1

DP
type: SiteQuality
SIO_000300: 1.94211e6

VQSLOD
type: SiteQuality
SIO_000300: 8.66e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.49907057624273e-5
allele num: 66708
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: -1.04e-1

FS
type: SiteQuality
SIO_000300: 1.082e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
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European (Non-Finnish)
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South Asian
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East Asian
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VQSLOD
type: SiteQuality
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MQ
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FS
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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DP
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QD
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InbreedingCoeff
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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European (Non-Finnish)
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allele num: 66708
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South Asian
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Latino
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Other
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European (Finnish)
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African
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BaseQRankSum
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InbreedingCoeff
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VQSLOD
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QD
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FS
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ClippingRankSum
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MQRankSum
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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Other
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QD
type: SiteQuality
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MQRankSum
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FS
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MQ
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InbreedingCoeff
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ReadPosRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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European (Non-Finnish)
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East Asian
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African
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European (Finnish)
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South Asian
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MQ
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InbreedingCoeff
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ReadPosRankSum
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QD
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MQRankSum
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ClippingRankSum
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SIO_000300: -1.455e0

FS
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DP
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SIO_000300: 1.941924e6

VQSLOD
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BaseQRankSum
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SIO_000300: -3.3e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.941e1

QD
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.99868058054456e-5
allele num: 66696
num of homozygotes: 0

Other
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allele num: 906
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
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allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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FS
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DP
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VQSLOD
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.158748551564311e-4
allele num: 8630
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16478
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66642
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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MQ
type: SiteQuality
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ReadPosRankSum
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DP
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MQRankSum
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InbreedingCoeff
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SIO_000300: -2.0e-4

VQSLOD
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SIO_000300: -2.71e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66616
num of homozygotes: 0

South Asian
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allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.893e0

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11494
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African
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 2
allele frequency: 1.214624073849144e-4
allele num: 16466
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European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003724618526973e-5
allele num: 66584
num of homozygotes: 0

Other
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QD
type: SiteQuality
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VQSLOD
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ReadPosRankSum
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FS
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MQ
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66552
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African
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 1.741856819369448e-4
allele num: 11482
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FS
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MQ
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DP
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MQRankSum
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VQSLOD
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele num: 66540
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East Asian
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South Asian
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Latino
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allele frequency: 0.0e0
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African
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Other
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European (Finnish)
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VQSLOD
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QD
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ReadPosRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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FS
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ClippingRankSum
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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African
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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QD
type: SiteQuality
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MQRankSum
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FS
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DP
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MQ
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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South Asian
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East Asian
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European (Finnish)
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African
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allele num: 10374
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Latino
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VQSLOD
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FS
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ClippingRankSum
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QD
type: SiteQuality
SIO_000300: 1.364e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.815e0

DP
type: SiteQuality
SIO_000300: 1.908834e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1935
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GenotypeQuality
all individuals: 9747
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variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506886471173262e-5
allele num: 66362
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11446
num of homozygotes: 0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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InbreedingCoeff
type: SiteQuality
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MQRankSum
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MQ
type: SiteQuality
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QD
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FS
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -4.526e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e-1

DP
type: SiteQuality
SIO_000300: 1.891608e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163061177017911e-4
allele num: 8598
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66364
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.88e0

VQSLOD
type: SiteQuality
SIO_000300: 2.23e0

MQRankSum
type: SiteQuality
SIO_000300: -1.21e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.62e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.891515e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.56e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11394
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10338
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
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allele count: 10
allele frequency: 6.098304671301379e-4
allele num: 16398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e-1

FS
type: SiteQuality
SIO_000300: 3.557e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.935e0

QD
type: SiteQuality
SIO_000300: 1.219e1

MQRankSum
type: SiteQuality
SIO_000300: 6.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.65e-1

DP
type: SiteQuality
SIO_000300: 1.862182e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509980974239725e-5
allele num: 66226
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.861541e6

QD
type: SiteQuality
SIO_000300: 1.445e1

MQRankSum
type: SiteQuality
SIO_000300: 2.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.86e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.559e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.22e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 16

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.407707196903044e-3
allele num: 11366
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 3.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.785e0

DP
type: SiteQuality
SIO_000300: 1.866786e6

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

QD
type: SiteQuality
SIO_000300: 1.349e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16370
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65896
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10286
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.759633996128805e-4
allele num: 11366
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

MQRankSum
type: SiteQuality
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MQ
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DP
type: SiteQuality
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VQSLOD
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BaseQRankSum
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FS
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 1.875e-1
allele num: 32
num of homozygotes: 1

Other
type: Population
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allele frequency: 0.0e0
allele num: 8
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European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
allele num: 8
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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FS
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QD
type: SiteQuality
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VQSLOD
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DP
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MQ
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 1
allele frequency: 1.25e-1
allele num: 8
num of homozygotes: 0

African
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allele count: 1
allele frequency: 2.631578947368421e-2
allele num: 38
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 394
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South Asian
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.397e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.88e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.89e-1

DP
type: SiteQuality
SIO_000300: 4.2622e4

GenotypeQuality
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variant carriers: 132

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 86

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 114

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 99

Latino
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allele count: 40
allele frequency: 6.451612903225806e-1
allele num: 62
num of homozygotes: 11

African
type: Population
allele count: 49
allele frequency: 3.951612903225806e-1
allele num: 124
num of homozygotes: 7

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 102
allele frequency: 7.727272727272727e-1
allele num: 132
num of homozygotes: 39

European (Non-Finnish)
type: Population
allele count: 677
allele frequency: 4.92721979621543e-1
allele num: 1374
num of homozygotes: 113

South Asian
type: Population
allele count: 1827
allele frequency: 5.939531859557867e-1
allele num: 3076
num of homozygotes: 449

Other
type: Population
allele count: 35
allele frequency: 5.46875e-1
allele num: 64
num of homozygotes: 7

QD
type: SiteQuality
SIO_000300: 2.028e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.635e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 6.5867e4

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.671e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.773925104022191e-3
allele num: 1442
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 120
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European (Finnish)
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allele frequency: NaN
allele num: 0
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East Asian
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South Asian
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allele num: 3152
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BaseQRankSum
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FS
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MQ
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InbreedingCoeff
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DP
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MQRankSum
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QD
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VQSLOD
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ReadPosRankSum
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SIO_000300: 5.36e-1

ClippingRankSum
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SIO_000300: 3.61e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 2.475247524752475e-3
allele num: 1616
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Latino
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South Asian
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allele num: 3640
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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allele frequency: 1.351351351351351e-2
allele num: 74
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European (Finnish)
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allele frequency: NaN
allele num: 0
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DP
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MQRankSum
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InbreedingCoeff
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VQSLOD
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FS
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BaseQRankSum
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MQ
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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African
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Other
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: NaN
allele num: 0
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South Asian
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allele frequency: 2.49500998003992e-4
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European (Non-Finnish)
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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DP
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QD
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FS
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MQ
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VQSLOD
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InbreedingCoeff
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SIO_000300: -5.24e-2

BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 2.612330198537095e-4
allele num: 3828
num of homozygotes: 0

European (Finnish)
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allele frequency: NaN
allele num: 0
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Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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Other
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DP
type: SiteQuality
SIO_000300: 8.1484e4

ReadPosRankSum
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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MQRankSum
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BaseQRankSum
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QD
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VQSLOD
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FS
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SIO_000300: 0.0e0

MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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African
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East Asian
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South Asian
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allele frequency: 3.881987577639751e-4
allele num: 5152
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European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 92
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 2242
num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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InbreedingCoeff
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FS
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MQ
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 1.063829787234043e-2
allele num: 94
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

South Asian
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allele frequency: 2.372262773722628e-3
allele num: 5480
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 5
allele frequency: 2.125850340136055e-3
allele num: 2352
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MQRankSum
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FS
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QD
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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Latino
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European (Non-Finnish)
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East Asian
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African
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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QD
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Latino
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African
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European (Finnish)
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South Asian
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East Asian
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Other
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QD
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BaseQRankSum
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DP
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FS
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VQSLOD
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MQ
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 4.761904761904762e-3
allele num: 210
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European (Non-Finnish)
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South Asian
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Other
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East Asian
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Latino
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European (Finnish)
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MQ
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QD
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ClippingRankSum
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 54
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.668378576669112e-4
allele num: 2726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

South Asian
type: Population
allele count: 7
allele frequency: 1.122514432328416e-3
allele num: 6236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.098360655737705e-3
allele num: 244
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.87e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

QD
type: SiteQuality
SIO_000300: 9.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.33e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.19e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

DP
type: SiteQuality
SIO_000300: 2.45615e5

GenotypeQuality
all individuals: 289
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 555
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3307
bin: 2.5e0
variant carriers: 9

GenotypeQuality
all individuals: 1895
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 249
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 48
bin: 9.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 244
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.100513573000734e-3
allele num: 2726
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 1.587301587301587e-2
allele num: 126
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 9.621552277100705e-4
allele num: 6236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 106
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.19e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.87e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.33e-1

DP
type: SiteQuality
SIO_000300: 2.45615e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

QD
type: SiteQuality
SIO_000300: 9.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.11e-1

GenotypeQuality
all individuals: 530
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27520
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 390
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.329080276448698e-4
allele num: 7524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 730
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 356
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.31e1

VQSLOD
type: SiteQuality
SIO_000300: -9.396e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.27e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.96e-1

DP
type: SiteQuality
SIO_000300: 2.83675e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.89e0

MQ
type: SiteQuality
SIO_000300: 6.026e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
all individuals: 974
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3060
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 823
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 230
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4022
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 204
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.25e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.51e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 3.45469e5

QD
type: SiteQuality
SIO_000300: 2.029e1

GenotypeQuality
all individuals: 571
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10626
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31687
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3202
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.953125e-3
allele num: 512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 192
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1620
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.203e1

DP
type: SiteQuality
SIO_000300: 3.79532e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.83e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.073e0